Wall clock time and date at job start Tue Mar 31 2020 00:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38369 * 119.45127 * 2 1 4 4 C 1.38338 * 119.30783 * 179.71340 * 3 2 1 5 5 C 1.40087 * 118.28237 * 0.52839 * 4 3 2 6 6 C 1.47730 * 120.56492 * 179.73124 * 5 4 3 7 7 O 1.21581 * 120.00171 * 120.64595 * 6 5 4 8 8 N 1.34777 * 119.99780 * 300.64821 * 6 5 4 9 9 C 1.36872 * 120.00176 * 184.40225 * 8 6 5 10 10 H 1.08003 * 119.99632 * 346.87690 * 9 8 6 11 11 C 1.39046 * 120.00069 * 166.86990 * 9 8 6 12 12 N 1.31363 * 120.00410 * 359.85484 * 11 9 8 13 13 Si 1.86804 * 119.99897 * 179.85163 * 11 9 8 14 14 H 1.48503 * 109.46936 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47043 * 120.00134 * 13 11 9 16 16 H 1.48497 * 109.47142 * 240.00310 * 13 11 9 17 17 C 1.46512 * 119.99960 * 4.40232 * 8 6 5 18 18 C 1.50703 * 109.46785 * 263.21149 * 17 8 6 19 19 O 1.20826 * 120.00259 * 0.02562 * 18 17 8 20 20 O 1.34233 * 119.99431 * 179.97438 * 18 17 8 21 21 C 1.39587 * 118.87009 * 359.45211 * 5 4 3 22 22 C 1.50702 * 119.72440 * 180.27943 * 21 5 4 23 23 N 1.31681 * 120.55888 * 0.30060 * 21 5 4 24 24 H 1.09000 * 109.47359 * 270.02115 * 1 2 3 25 25 H 1.09004 * 109.46843 * 30.02430 * 1 2 3 26 26 H 1.08998 * 109.47184 * 150.02086 * 1 2 3 27 27 H 1.07998 * 120.34917 * 359.97438 * 3 2 1 28 28 H 1.08005 * 120.85680 * 180.27850 * 4 3 2 29 29 H 0.96992 * 120.00306 * 179.97438 * 12 11 9 30 30 H 1.08996 * 109.46696 * 23.21420 * 17 8 6 31 31 H 1.09000 * 109.46763 * 143.21298 * 17 8 6 32 32 H 0.96699 * 116.99743 * 179.97438 * 20 18 17 33 33 H 1.08995 * 109.47118 * 94.40488 * 22 21 5 34 34 H 1.09001 * 109.47215 * 214.41184 * 22 21 5 35 35 H 1.09004 * 109.46729 * 334.40602 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1873 1.2049 0.0000 4 6 3.5707 1.2014 0.0060 5 6 4.2314 -0.0338 0.0006 6 6 5.7074 -0.0963 0.0006 7 8 6.2918 -0.6624 0.9041 8 7 6.4060 0.4742 -1.0008 9 6 7.7672 0.3394 -1.0490 10 1 8.3036 -0.0341 -0.1893 11 6 8.4594 0.6832 -2.2049 12 7 7.8067 1.1347 -3.2517 13 14 10.3176 0.5031 -2.2693 14 1 10.8092 -0.0229 -0.9705 15 1 10.6862 -0.4395 -3.3560 16 1 10.9345 1.8279 -2.5328 17 6 5.7084 1.2388 -2.0378 18 6 5.4724 0.3582 -3.2378 19 8 5.8479 -0.7902 -3.2278 20 8 4.8441 0.8496 -4.3175 21 6 3.4714 -1.2047 0.0010 22 6 4.1623 -2.5440 0.0016 23 7 2.1557 -1.1488 0.0005 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8901 -0.5135 27 1 1.6441 2.1383 -0.0004 28 1 4.1269 2.1272 0.0107 29 1 8.2895 1.3749 -4.0578 30 1 4.7517 1.5883 -1.6497 31 1 6.3169 2.0948 -2.3293 32 1 4.7160 0.2470 -5.0629 33 1 4.2586 -2.9026 1.0263 34 1 3.5754 -3.2558 -0.5789 35 1 5.1526 -2.4421 -0.4424 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738505266.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:31 Heat of formation + Delta-G solvation = -96.920583 kcal Electronic energy + Delta-G solvation = -22445.490532 eV Core-core repulsion = 19022.410393 eV Total energy + Delta-G solvation = -3423.080139 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.89584 -40.80259 -39.71320 -37.13127 -36.34121 -34.59588 -34.30517 -33.26169 -30.02783 -29.62436 -28.53685 -26.53456 -23.81051 -23.32760 -22.72342 -21.26532 -19.15238 -18.77781 -18.29619 -17.77516 -17.24998 -16.93266 -16.40183 -16.14917 -16.10124 -15.63770 -15.16090 -15.02700 -14.36800 -14.20139 -14.11752 -13.73065 -13.58655 -13.32850 -13.12306 -12.95543 -12.89704 -12.86086 -12.73098 -12.41965 -12.16262 -12.13876 -11.55515 -11.03542 -10.93137 -10.73244 -10.37152 -10.03468 -9.71435 -8.45061 -6.05832 -0.12130 0.19376 1.30233 1.38568 1.52237 1.67472 1.89532 2.17764 2.47560 2.67998 2.88962 3.10224 3.22361 3.64597 3.76923 3.79070 4.13958 4.21421 4.43132 4.54158 4.56745 4.59754 4.77221 4.84570 4.87646 4.96057 5.00606 5.08507 5.19298 5.26820 5.35633 5.71217 5.89206 5.96843 6.29679 6.93758 6.98535 7.19878 7.45617 7.77353 8.54474 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.006568 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.596921 B = 4261.810925 C = 4729.771647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.126 3.874 3 C -0.164 4.164 4 C -0.060 4.060 5 C -0.185 4.185 6 C 0.494 3.506 7 O -0.612 6.612 8 N -0.432 5.432 9 C -0.321 4.321 10 H 0.086 0.914 11 C 0.000 4.000 12 N -0.902 5.902 13 Si 1.001 2.999 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.259 1.259 17 C 0.142 3.858 18 C 0.506 3.494 19 O -0.563 6.563 20 O -0.519 6.519 21 C 0.151 3.849 22 C -0.094 4.094 23 N -0.502 5.502 24 H 0.094 0.906 25 H 0.106 0.894 26 H 0.073 0.927 27 H 0.187 0.813 28 H 0.157 0.843 29 H 0.277 0.723 30 H 0.106 0.894 31 H 0.136 0.864 32 H 0.409 0.591 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.001 5.143 -0.342 13.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.013 4.013 3 C -0.183 4.183 4 C -0.085 4.085 5 C -0.191 4.191 6 C 0.284 3.716 7 O -0.499 6.499 8 N -0.149 5.149 9 C -0.449 4.449 10 H 0.104 0.896 11 C -0.199 4.199 12 N -0.544 5.544 13 Si 0.825 3.175 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.184 1.184 17 C 0.017 3.983 18 C 0.349 3.651 19 O -0.453 6.453 20 O -0.331 6.331 21 C 0.014 3.986 22 C -0.151 4.151 23 N -0.213 5.213 24 H 0.112 0.888 25 H 0.125 0.875 26 H 0.092 0.908 27 H 0.204 0.796 28 H 0.175 0.825 29 H 0.088 0.912 30 H 0.124 0.876 31 H 0.153 0.847 32 H 0.268 0.732 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.929 4.136 0.228 13.577 hybrid contribution 1.873 -0.119 -0.769 2.029 sum -11.056 4.017 -0.541 11.776 Atomic orbital electron populations 1.20849 0.85327 1.04851 1.04412 1.22245 0.99140 0.87866 0.92038 1.22295 0.93155 1.00934 1.01928 1.22025 0.95926 0.96534 0.94057 1.20871 0.93866 0.96565 1.07769 1.18264 0.86850 0.81871 0.84632 1.90582 1.71724 1.48607 1.38994 1.43510 1.06446 1.44422 1.20546 1.19823 0.81609 1.42883 1.00546 0.89645 1.26002 1.05217 0.95124 0.93579 1.69504 1.37026 1.43642 1.04199 0.84746 0.76256 0.78525 0.78008 1.19747 1.20881 1.18363 1.21247 0.98473 0.94499 0.84096 1.23578 0.70929 0.86244 0.84337 1.90567 1.49693 1.22201 1.82826 1.84437 1.72446 1.49094 1.27130 1.21235 0.89421 0.94866 0.93098 1.20581 0.98661 0.92658 1.03191 1.67390 1.07909 1.30989 1.15019 0.88771 0.87502 0.90810 0.79603 0.82528 0.91185 0.87646 0.84654 0.73175 0.89792 0.89459 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 10.16 71.24 0.72 -0.84 16 2 C 0.13 3.33 6.78 42.57 0.29 3.61 16 3 C -0.16 -3.92 9.72 22.32 0.22 -3.71 16 4 C -0.06 -1.88 7.70 22.74 0.18 -1.70 16 5 C -0.19 -7.74 4.97 -19.99 -0.10 -7.84 16 6 C 0.49 25.36 5.86 86.75 0.51 25.87 16 7 O -0.61 -35.69 15.96 -3.97 -0.06 -35.75 16 8 N -0.43 -22.40 2.18 -642.99 -1.40 -23.80 16 9 C -0.32 -18.06 9.30 84.10 0.78 -17.27 16 10 H 0.09 5.12 7.22 -2.91 -0.02 5.10 16 11 C 0.00 -0.01 5.26 84.96 0.45 0.43 16 12 N -0.90 -45.51 7.77 21.68 0.17 -45.34 16 13 Si 1.00 42.60 29.55 68.60 2.03 44.62 16 14 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 15 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 16 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 17 C 0.14 6.28 5.17 85.63 0.44 6.72 16 18 C 0.51 23.22 6.03 71.24 0.43 23.65 16 19 O -0.56 -30.60 16.59 21.96 0.36 -30.23 16 20 O -0.52 -18.85 13.42 -51.45 -0.69 -19.55 16 21 C 0.15 6.12 6.82 42.91 0.29 6.41 16 22 C -0.09 -3.80 9.55 71.24 0.68 -3.12 16 23 N -0.50 -17.39 10.17 -171.00 -1.74 -19.13 16 24 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.11 1.06 8.07 -2.39 -0.02 1.04 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.19 2.56 8.06 -2.91 -0.02 2.54 16 28 H 0.16 4.29 7.39 -2.91 -0.02 4.27 16 29 H 0.28 13.27 8.31 -92.71 -0.77 12.50 16 30 H 0.11 3.88 4.21 -2.39 -0.01 3.87 16 31 H 0.14 6.15 6.30 -2.39 -0.02 6.13 16 32 H 0.41 11.45 9.10 -74.06 -0.67 10.77 16 33 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 35 H 0.04 2.18 6.72 -2.39 -0.02 2.16 16 Total: -1.00 -75.78 302.22 4.03 -71.75 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.47 Total: 25.22 kcal Atomic # 6 Polarization: 27.32 SS G_CDS: 4.89 Total: 32.21 kcal Atomic # 7 Polarization: -85.30 SS G_CDS: -2.97 Total: -88.27 kcal Atomic # 8 Polarization: -85.14 SS G_CDS: -0.39 Total: -85.53 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -75.78 4.03 -71.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738505266.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.173 kcal (2) G-P(sol) polarization free energy of solvation -75.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds