Wall clock time and date at job start Tue Mar 31 2020 00:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38231 * 119.61728 * 2 1 4 4 C 1.38633 * 119.15853 * 179.97438 * 3 2 1 5 5 C 1.38676 * 118.41959 * 0.25591 * 4 3 2 6 6 C 1.50698 * 120.41359 * 179.74935 * 5 4 3 7 7 C 1.50701 * 109.47384 * 89.99881 * 6 5 4 8 8 O 1.21292 * 119.99714 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00449 * 179.97438 * 7 6 5 10 10 C 1.37096 * 120.00419 * 179.97438 * 9 7 6 11 11 H 1.08000 * 119.99806 * 11.51610 * 10 9 7 12 12 C 1.38949 * 119.99975 * 191.51040 * 10 9 7 13 13 N 1.31407 * 120.00239 * 21.39400 * 12 10 9 14 14 Si 1.86802 * 119.99628 * 201.39038 * 12 10 9 15 15 H 1.48504 * 109.47148 * 84.99200 * 14 12 10 16 16 H 1.48506 * 109.46780 * 204.98708 * 14 12 10 17 17 H 1.48495 * 109.47525 * 324.98584 * 14 12 10 18 18 C 1.46505 * 119.99703 * 0.02562 * 9 7 6 19 19 C 1.50702 * 109.47352 * 84.66411 * 18 9 7 20 20 O 1.20821 * 119.99845 * 359.97438 * 19 18 9 21 21 O 1.34224 * 119.99807 * 179.97438 * 19 18 9 22 22 C 1.38175 * 119.16125 * 359.47529 * 5 4 3 23 23 N 1.31852 * 119.62085 * 179.97438 * 2 1 3 24 24 H 1.09008 * 109.46873 * 89.99806 * 1 2 3 25 25 H 1.08998 * 109.47311 * 209.99654 * 1 2 3 26 26 H 1.08999 * 109.47365 * 330.00674 * 1 2 3 27 27 H 1.07996 * 120.42353 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.78619 * 179.97438 * 4 3 2 29 29 H 1.09003 * 109.46661 * 209.99765 * 6 5 4 30 30 H 1.09000 * 109.47158 * 329.99861 * 6 5 4 31 31 H 0.96999 * 120.00169 * 180.02562 * 13 12 10 32 32 H 1.08996 * 109.46927 * 204.66421 * 18 9 7 33 33 H 1.09003 * 109.47061 * 324.66258 * 18 9 7 34 34 H 0.96701 * 116.99567 * 179.97438 * 21 19 18 35 35 H 1.08007 * 119.61821 * 180.25016 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1906 0.0005 5 6 4.2266 -0.0343 -0.0044 6 6 5.7322 -0.0987 -0.0097 7 6 6.2390 -0.1233 1.4093 8 8 5.4547 -0.0911 2.3340 9 7 7.5636 -0.1811 1.6509 10 6 8.0247 -0.2029 2.9419 11 1 7.3361 -0.3611 3.7586 12 6 9.3780 -0.0216 3.1994 13 7 10.1420 0.5732 2.3109 14 14 10.1113 -0.6233 4.8086 15 1 10.4731 -2.0580 4.6820 16 1 11.3277 0.1679 5.1247 17 1 9.1164 -0.4579 5.8985 18 6 8.5109 -0.2194 0.5340 19 6 8.7962 1.1854 0.0688 20 8 8.2626 2.1223 0.6139 21 8 9.6430 1.3956 -0.9512 22 6 3.4766 -1.1947 0.0014 23 7 2.1587 -1.1462 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6508 2.1374 0.0004 28 1 4.1366 2.1140 0.0001 29 1 6.0553 -1.0024 -0.5266 30 1 6.1315 0.7760 -0.5230 31 1 11.0869 0.6995 2.4905 32 1 9.4386 -0.6894 0.8604 33 1 8.0817 -0.7939 -0.2869 34 1 9.7941 2.3138 -1.2141 35 1 3.9754 -2.1527 0.0017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738582915.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:35 Heat of formation + Delta-G solvation = -81.909647 kcal Electronic energy + Delta-G solvation = -21600.348399 eV Core-core repulsion = 18177.919183 eV Total energy + Delta-G solvation = -3422.429216 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.14415 -39.41897 -38.13829 -35.37627 -34.66097 -33.59693 -32.02811 -31.83124 -29.60734 -27.76080 -26.16942 -24.36015 -23.22307 -21.51177 -21.11639 -19.01849 -17.27225 -16.99356 -16.42348 -16.35961 -15.96158 -15.60607 -14.90010 -14.70731 -14.51719 -14.16704 -13.96262 -13.69462 -12.96152 -12.78859 -12.63379 -12.26189 -12.11904 -12.09215 -11.72511 -11.69070 -11.52410 -11.16882 -10.96305 -10.51129 -10.44044 -10.31821 -9.75901 -9.49439 -9.19992 -9.09355 -8.75351 -8.34994 -8.01936 -6.50776 -3.93152 1.37752 1.59487 3.10862 3.21610 3.26539 3.34302 3.57331 3.94106 4.07411 4.18513 4.51344 4.72862 4.92704 5.00135 5.09194 5.19320 5.33723 5.49288 5.59907 5.64791 5.67225 5.73466 5.81378 5.92683 6.06342 6.15036 6.37903 6.39824 6.60096 6.62805 6.98864 7.39915 7.49179 7.89639 8.24924 8.30618 8.92256 9.02787 9.24015 9.76758 10.57060 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022910 B = 0.005095 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.878771 B = 5493.821032 C = 6278.182042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.111 3.889 3 C -0.172 4.172 4 C -0.059 4.059 5 C -0.100 4.100 6 C -0.097 4.097 7 C 0.462 3.538 8 O -0.569 6.569 9 N -0.432 5.432 10 C -0.300 4.300 11 H 0.110 0.890 12 C 0.027 3.973 13 N -0.887 5.887 14 Si 0.931 3.069 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.270 1.270 18 C 0.139 3.861 19 C 0.489 3.511 20 O -0.509 6.509 21 O -0.532 6.532 22 C 0.115 3.885 23 N -0.487 5.487 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.272 0.728 32 H 0.140 0.860 33 H 0.077 0.923 34 H 0.392 0.608 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.487 -0.764 -9.411 11.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.027 4.027 3 C -0.192 4.192 4 C -0.085 4.085 5 C -0.102 4.102 6 C -0.138 4.138 7 C 0.251 3.749 8 O -0.451 6.451 9 N -0.152 5.152 10 C -0.427 4.427 11 H 0.127 0.873 12 C -0.174 4.174 13 N -0.527 5.527 14 Si 0.758 3.242 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.194 1.194 18 C 0.013 3.987 19 C 0.330 3.670 20 O -0.395 6.395 21 O -0.343 6.343 22 C -0.042 4.042 23 N -0.196 5.196 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.157 0.843 33 H 0.095 0.905 34 H 0.248 0.752 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.392 -1.624 -8.642 11.488 hybrid contribution 1.481 1.504 0.586 2.191 sum -5.911 -0.121 -8.056 9.993 Atomic orbital electron populations 1.20642 0.89301 1.03144 1.02524 1.21175 0.96714 0.88596 0.96223 1.21839 0.94706 0.98997 1.03632 1.21451 0.94244 0.98047 0.94795 1.20366 0.95820 0.94302 0.99721 1.20621 0.91598 1.03797 0.97761 1.19802 0.82772 0.82792 0.89579 1.90562 1.54849 1.53987 1.45737 1.43492 1.02959 1.63137 1.05623 1.19774 0.92555 1.46781 0.83627 0.87274 1.25205 0.96511 0.95999 0.99725 1.69811 1.07318 1.38749 1.36867 0.85855 0.78325 0.78658 0.81402 1.20144 1.21081 1.19443 1.20916 0.98333 0.90043 0.89450 1.23970 0.74282 0.93798 0.74976 1.90618 1.50321 1.44867 1.53708 1.84536 1.63155 1.35621 1.51008 1.22497 0.89024 0.97882 0.94841 1.67459 1.09840 1.29301 1.13034 0.90890 0.90743 0.91052 0.85246 0.85105 0.88963 0.89349 0.91785 0.84268 0.90523 0.75153 0.83034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 10.17 36.00 0.37 -0.70 16 2 C 0.11 1.65 6.78 -82.59 -0.56 1.10 16 3 C -0.17 -2.51 9.74 -39.44 -0.38 -2.90 16 4 C -0.06 -0.99 9.86 -39.27 -0.39 -1.37 16 5 C -0.10 -1.76 4.39 -104.48 -0.46 -2.21 16 6 C -0.10 -1.73 4.46 -29.04 -0.13 -1.86 16 7 C 0.46 10.93 7.44 -10.99 -0.08 10.84 16 8 O -0.57 -15.60 15.64 5.55 0.09 -15.51 16 9 N -0.43 -10.58 2.17 -116.09 -0.25 -10.83 16 10 C -0.30 -8.12 9.42 -14.93 -0.14 -8.26 16 11 H 0.11 3.13 7.31 -52.49 -0.38 2.75 16 12 C 0.03 0.70 4.95 -17.47 -0.09 0.61 16 13 N -0.89 -22.60 9.27 55.50 0.51 -22.09 16 14 Si 0.93 20.27 29.60 -169.99 -5.03 15.24 16 15 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 16 H -0.29 -6.19 7.11 56.52 0.40 -5.78 16 17 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 18 C 0.14 2.90 4.98 -5.19 -0.03 2.87 16 19 C 0.49 10.38 6.05 36.01 0.22 10.60 16 20 O -0.51 -12.77 17.03 -18.75 -0.32 -13.09 16 21 O -0.53 -9.09 13.42 -39.24 -0.53 -9.61 16 22 C 0.11 1.95 10.86 -17.55 -0.19 1.76 16 23 N -0.49 -8.25 10.27 -9.48 -0.10 -8.35 16 24 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 27 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 29 H 0.09 1.34 7.37 -51.93 -0.38 0.96 16 30 H 0.09 1.53 7.52 -51.93 -0.39 1.14 16 31 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 32 H 0.14 3.06 6.01 -51.93 -0.31 2.74 16 33 H 0.08 1.26 6.66 -51.93 -0.35 0.91 16 34 H 0.39 5.06 9.10 45.56 0.41 5.48 16 35 H 0.15 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 308.66 15.07 4.65 4.65 Total: -1.00 -34.32 308.66 -5.90 -40.23 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -3.07 Total: 8.88 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: -1.86 Total: 10.47 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.17 Total: -41.26 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -0.76 Total: -38.21 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.32 -5.90 -40.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738582915.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.681 kcal (2) G-P(sol) polarization free energy of solvation -34.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds