Wall clock time and date at job start Tue Mar 31 2020 00:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38231 * 119.61728 * 2 1 4 4 C 1.38633 * 119.15853 * 179.97438 * 3 2 1 5 5 C 1.38676 * 118.41959 * 0.25591 * 4 3 2 6 6 C 1.50698 * 120.41359 * 179.74935 * 5 4 3 7 7 C 1.50701 * 109.47384 * 89.99881 * 6 5 4 8 8 O 1.21292 * 119.99714 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00449 * 179.97438 * 7 6 5 10 10 C 1.37096 * 120.00419 * 179.97438 * 9 7 6 11 11 H 1.08000 * 119.99806 * 11.51610 * 10 9 7 12 12 C 1.38949 * 119.99975 * 191.51040 * 10 9 7 13 13 N 1.31407 * 120.00239 * 21.39400 * 12 10 9 14 14 Si 1.86802 * 119.99628 * 201.39038 * 12 10 9 15 15 H 1.48504 * 109.47148 * 84.99200 * 14 12 10 16 16 H 1.48506 * 109.46780 * 204.98708 * 14 12 10 17 17 H 1.48495 * 109.47525 * 324.98584 * 14 12 10 18 18 C 1.46505 * 119.99703 * 0.02562 * 9 7 6 19 19 C 1.50702 * 109.47352 * 84.66411 * 18 9 7 20 20 O 1.20821 * 119.99845 * 359.97438 * 19 18 9 21 21 O 1.34224 * 119.99807 * 179.97438 * 19 18 9 22 22 C 1.38175 * 119.16125 * 359.47529 * 5 4 3 23 23 N 1.31852 * 119.62085 * 179.97438 * 2 1 3 24 24 H 1.09008 * 109.46873 * 89.99806 * 1 2 3 25 25 H 1.08998 * 109.47311 * 209.99654 * 1 2 3 26 26 H 1.08999 * 109.47365 * 330.00674 * 1 2 3 27 27 H 1.07996 * 120.42353 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.78619 * 179.97438 * 4 3 2 29 29 H 1.09003 * 109.46661 * 209.99765 * 6 5 4 30 30 H 1.09000 * 109.47158 * 329.99861 * 6 5 4 31 31 H 0.96999 * 120.00169 * 180.02562 * 13 12 10 32 32 H 1.08996 * 109.46927 * 204.66421 * 18 9 7 33 33 H 1.09003 * 109.47061 * 324.66258 * 18 9 7 34 34 H 0.96701 * 116.99567 * 179.97438 * 21 19 18 35 35 H 1.08007 * 119.61821 * 180.25016 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1906 0.0005 5 6 4.2266 -0.0343 -0.0044 6 6 5.7322 -0.0987 -0.0097 7 6 6.2390 -0.1233 1.4093 8 8 5.4547 -0.0911 2.3340 9 7 7.5636 -0.1811 1.6509 10 6 8.0247 -0.2029 2.9419 11 1 7.3361 -0.3611 3.7586 12 6 9.3780 -0.0216 3.1994 13 7 10.1420 0.5732 2.3109 14 14 10.1113 -0.6233 4.8086 15 1 10.4731 -2.0580 4.6820 16 1 11.3277 0.1679 5.1247 17 1 9.1164 -0.4579 5.8985 18 6 8.5109 -0.2194 0.5340 19 6 8.7962 1.1854 0.0688 20 8 8.2626 2.1223 0.6139 21 8 9.6430 1.3956 -0.9512 22 6 3.4766 -1.1947 0.0014 23 7 2.1587 -1.1462 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6508 2.1374 0.0004 28 1 4.1366 2.1140 0.0001 29 1 6.0553 -1.0024 -0.5266 30 1 6.1315 0.7760 -0.5230 31 1 11.0869 0.6995 2.4905 32 1 9.4386 -0.6894 0.8604 33 1 8.0817 -0.7939 -0.2869 34 1 9.7941 2.3138 -1.2141 35 1 3.9754 -2.1527 0.0017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738582915.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:35 Heat of formation + Delta-G solvation = -105.653862 kcal Electronic energy + Delta-G solvation = -21601.378025 eV Core-core repulsion = 18177.919183 eV Total energy + Delta-G solvation = -3423.458842 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.53156 -40.96496 -39.84687 -37.06833 -36.40732 -34.94101 -33.73092 -33.20060 -30.88071 -29.47573 -27.58761 -26.02524 -24.44498 -22.95743 -22.57760 -20.71910 -19.03800 -18.71471 -18.12327 -17.69065 -17.38209 -17.00422 -16.49995 -16.27430 -16.14873 -15.62882 -15.37056 -15.27672 -14.40883 -14.13555 -13.89263 -13.75713 -13.56716 -13.42765 -13.13356 -13.12259 -12.93532 -12.67304 -12.49606 -12.29059 -12.15443 -12.12302 -11.56295 -10.94345 -10.77980 -10.50319 -10.41018 -9.91775 -9.65859 -8.44522 -5.94176 0.16588 0.35672 1.35986 1.42807 1.53486 1.67274 1.87134 2.24359 2.52968 2.74391 3.01163 3.16363 3.42111 3.76725 3.82786 3.98726 4.04160 4.10918 4.28111 4.42268 4.51989 4.68391 4.73456 4.82845 4.83490 4.89223 4.96704 5.18794 5.21587 5.38561 5.45159 5.81416 5.93978 5.99288 6.38088 7.04390 7.09893 7.29291 7.44087 7.91924 8.60660 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022910 B = 0.005095 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.878771 B = 5493.821032 C = 6278.182042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.103 3.897 3 C -0.171 4.171 4 C -0.077 4.077 5 C -0.122 4.122 6 C -0.082 4.082 7 C 0.452 3.548 8 O -0.619 6.619 9 N -0.444 5.444 10 C -0.338 4.338 11 H 0.077 0.923 12 C 0.001 3.999 13 N -0.894 5.894 14 Si 0.990 3.010 15 H -0.260 1.260 16 H -0.278 1.278 17 H -0.282 1.282 18 C 0.135 3.865 19 C 0.497 3.503 20 O -0.554 6.554 21 O -0.516 6.516 22 C 0.103 3.897 23 N -0.507 5.507 24 H 0.093 0.907 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.162 0.838 28 H 0.132 0.868 29 H 0.128 0.872 30 H 0.095 0.905 31 H 0.276 0.724 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.414 0.586 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.517 -0.873 -10.771 12.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.035 4.035 3 C -0.190 4.190 4 C -0.103 4.103 5 C -0.125 4.125 6 C -0.122 4.122 7 C 0.243 3.757 8 O -0.505 6.505 9 N -0.163 5.163 10 C -0.465 4.465 11 H 0.094 0.906 12 C -0.200 4.200 13 N -0.533 5.533 14 Si 0.814 3.186 15 H -0.184 1.184 16 H -0.203 1.203 17 H -0.208 1.208 18 C 0.009 3.991 19 C 0.340 3.660 20 O -0.444 6.444 21 O -0.328 6.328 22 C -0.054 4.054 23 N -0.217 5.217 24 H 0.112 0.888 25 H 0.090 0.910 26 H 0.111 0.889 27 H 0.180 0.820 28 H 0.150 0.850 29 H 0.146 0.854 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.273 0.727 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.373 -1.736 -10.068 12.599 hybrid contribution 1.482 1.597 0.956 2.380 sum -5.891 -0.138 -9.112 10.851 Atomic orbital electron populations 1.20758 0.86291 1.04128 1.04135 1.21917 0.98773 0.88184 0.94604 1.22206 0.94046 1.00439 1.02352 1.21694 0.95511 0.97911 0.95158 1.20425 0.95620 0.95020 1.01389 1.20522 0.91986 1.05761 0.93929 1.20762 0.82204 0.81224 0.91528 1.90514 1.56025 1.56042 1.47943 1.43632 1.03979 1.62969 1.05730 1.19610 0.92951 1.49429 0.84541 0.90554 1.25862 0.96124 0.95308 1.02679 1.69886 1.07491 1.38077 1.37892 0.85000 0.77145 0.78978 0.77480 1.18446 1.20316 1.20782 1.21080 0.97662 0.90564 0.89772 1.23929 0.73854 0.93340 0.74912 1.90611 1.52178 1.46126 1.55490 1.84460 1.61493 1.37554 1.49289 1.22737 0.89428 0.98331 0.94901 1.67529 1.09820 1.30475 1.13863 0.88810 0.90978 0.88856 0.81994 0.85016 0.85395 0.88653 0.91409 0.85317 0.85748 0.72666 0.81895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.83 10.17 71.23 0.72 -1.10 16 2 C 0.10 2.92 6.78 42.55 0.29 3.21 16 3 C -0.17 -4.73 9.74 22.36 0.22 -4.51 16 4 C -0.08 -2.52 9.86 22.47 0.22 -2.30 16 5 C -0.12 -4.26 4.39 -19.78 -0.09 -4.35 16 6 C -0.08 -2.86 4.46 29.10 0.13 -2.73 16 7 C 0.45 21.76 7.44 87.66 0.65 22.41 16 8 O -0.62 -35.32 15.64 -3.07 -0.05 -35.37 16 9 N -0.44 -21.99 2.17 -639.59 -1.39 -23.38 16 10 C -0.34 -18.81 9.42 84.04 0.79 -18.02 16 11 H 0.08 4.65 7.31 -2.91 -0.02 4.62 16 12 C 0.00 0.07 4.95 84.93 0.42 0.49 16 13 N -0.89 -45.11 9.27 21.66 0.20 -44.91 16 14 Si 0.99 41.69 29.60 68.60 2.03 43.72 16 15 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 16 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 18 C 0.13 5.45 4.98 85.63 0.43 5.88 16 19 C 0.50 20.47 6.05 71.24 0.43 20.90 16 20 O -0.55 -27.72 17.03 21.98 0.37 -27.35 16 21 O -0.52 -16.32 13.42 -51.36 -0.69 -17.01 16 22 C 0.10 3.45 10.86 84.67 0.92 4.37 16 23 N -0.51 -16.79 10.27 -183.89 -1.89 -18.68 16 24 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 27 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 28 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 29 H 0.13 3.44 7.37 -2.39 -0.02 3.43 16 30 H 0.10 3.19 7.52 -2.39 -0.02 3.18 16 31 H 0.28 13.17 8.31 -92.71 -0.77 12.40 16 32 H 0.13 5.52 6.01 -2.39 -0.01 5.51 16 33 H 0.13 3.74 6.66 -2.39 -0.02 3.72 16 34 H 0.41 9.59 9.10 -74.06 -0.67 8.91 16 35 H 0.16 4.83 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -76.63 308.66 4.19 -72.44 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.46 Total: 26.28 kcal Atomic # 6 Polarization: 19.12 SS G_CDS: 5.14 Total: 24.26 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -3.08 Total: -86.97 kcal Atomic # 8 Polarization: -79.37 SS G_CDS: -0.36 Total: -79.73 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -76.63 4.19 -72.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738582915.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.210 kcal (2) G-P(sol) polarization free energy of solvation -76.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds