Wall clock time and date at job start Tue Mar 31 2020 00:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00121 * 2 1 4 4 H 1.48500 * 109.47285 * 269.99552 * 3 2 1 5 5 H 1.48501 * 109.46911 * 29.99933 * 3 2 1 6 6 H 1.48506 * 109.47394 * 149.99512 * 3 2 1 7 7 C 1.37879 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99597 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00125 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47445 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47515 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.47437 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00127 * 179.97438 * 12 11 10 14 14 O 1.21501 * 120.00339 * 0.02562 * 13 12 11 15 15 C 1.48232 * 119.99943 * 179.97438 * 13 12 11 16 16 C 1.39644 * 119.65209 * 179.97438 * 15 13 12 17 17 C 1.38547 * 119.25104 * 180.02562 * 16 15 13 18 18 C 1.38584 * 118.55617 * 359.73063 * 17 16 15 19 19 C 1.39628 * 119.23900 * 0.52895 * 18 17 16 20 20 C 1.48128 * 119.65022 * 179.73561 * 19 18 17 21 21 O 1.21423 * 120.00463 * 359.72822 * 20 19 18 22 22 O 1.34674 * 119.99507 * 179.45073 * 20 19 18 23 23 N 1.32329 * 119.65078 * 0.02562 * 15 13 12 24 24 H 0.97003 * 119.99732 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47134 * 60.00062 * 9 7 2 26 26 H 1.09000 * 109.46779 * 300.00377 * 9 7 2 27 27 H 1.09005 * 109.47016 * 59.99309 * 10 9 7 28 28 H 1.09004 * 109.47126 * 300.00325 * 10 9 7 29 29 H 1.09000 * 109.46962 * 59.99863 * 11 10 9 30 30 H 1.09001 * 109.47562 * 299.99910 * 11 10 9 31 31 H 0.96997 * 119.99824 * 0.02562 * 12 11 10 32 32 H 1.07999 * 120.37574 * 359.97438 * 16 15 13 33 33 H 1.08001 * 120.71748 * 180.02562 * 17 16 15 34 34 H 1.07994 * 120.37515 * 180.28346 * 18 17 16 35 35 H 0.96699 * 116.99636 * 180.26849 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5515 -2.6366 0.0009 12 7 6.0398 -4.0178 0.0014 13 6 7.3649 -4.2641 0.0010 14 8 8.1545 -3.3406 0.0006 15 6 7.8590 -5.6616 0.0020 16 6 9.2334 -5.9085 0.0010 17 6 9.6861 -7.2179 0.0015 18 6 8.7521 -8.2417 0.0087 19 6 7.3923 -7.9244 0.0040 20 6 6.3862 -9.0116 0.0057 21 8 6.7455 -10.1714 0.0062 22 8 5.0729 -8.7135 0.0124 23 7 6.9930 -6.6621 0.0030 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6801 0.8911 26 1 3.8751 -0.6804 -0.8888 27 1 3.6584 -3.1502 -0.8892 28 1 3.6578 -3.1506 0.8907 29 1 5.9148 -2.1228 0.8909 30 1 5.9149 -2.1227 -0.8890 31 1 5.4095 -4.7550 0.0014 32 1 9.9357 -5.0879 -0.0010 33 1 10.7439 -7.4359 0.0011 34 1 9.0724 -9.2730 0.0139 35 1 4.4541 -9.4566 0.0173 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739068278.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:03 Heat of formation + Delta-G solvation = -98.273357 kcal Electronic energy + Delta-G solvation = -20108.351606 eV Core-core repulsion = 16685.212806 eV Total energy + Delta-G solvation = -3423.138800 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.33982 -40.15499 -38.94443 -36.51404 -35.63688 -33.62882 -33.03629 -32.25822 -31.28936 -27.45907 -25.90407 -25.03263 -22.97386 -22.04715 -20.85457 -20.18709 -18.80356 -18.29604 -17.40118 -16.81890 -16.49604 -16.25466 -16.00008 -15.56971 -15.47562 -14.48933 -14.42854 -14.12041 -13.77999 -13.59190 -13.55913 -12.70803 -12.61310 -12.05341 -11.94126 -11.92256 -11.48004 -11.08990 -10.89716 -10.61017 -10.58703 -10.20668 -9.99278 -9.82457 -9.80417 -9.63691 -9.21958 -8.92344 -8.54791 -6.05360 -4.04007 -0.10591 0.37842 1.83601 2.38378 2.62581 3.00866 3.31706 3.39267 3.43226 3.46631 3.62549 4.27743 4.36127 4.42817 4.45011 4.54039 4.92592 4.99570 5.28637 5.37867 5.47407 5.55465 5.63575 5.87243 5.99471 6.00034 6.28330 6.44260 6.64691 6.78541 6.94430 7.23539 7.36771 7.47733 7.58048 7.77056 8.13327 8.51606 8.99015 9.56783 11.07933 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023934 B = 0.003247 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.588348 B = 8622.149625 C = 9765.986391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.112 3.888 12 N -0.700 5.700 13 C 0.565 3.435 14 O -0.535 6.535 15 C 0.084 3.916 16 C -0.081 4.081 17 C -0.087 4.087 18 C -0.088 4.088 19 C 0.087 3.913 20 C 0.546 3.454 21 O -0.507 6.507 22 O -0.488 6.488 23 N -0.407 5.407 24 H 0.263 0.737 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.412 0.588 32 H 0.159 0.841 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.016 -18.165 0.044 26.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.011 4.011 12 N -0.350 5.350 13 C 0.348 3.652 14 O -0.412 6.412 15 C -0.058 4.058 16 C -0.101 4.101 17 C -0.112 4.112 18 C -0.108 4.108 19 C -0.052 4.052 20 C 0.388 3.612 21 O -0.395 6.395 22 O -0.298 6.298 23 N -0.122 5.122 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.248 0.752 32 H 0.177 0.823 33 H 0.174 0.826 34 H 0.174 0.826 35 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 18.835 -17.162 0.046 25.481 hybrid contribution 0.436 -0.171 -0.022 0.469 sum 19.271 -17.332 0.024 25.919 Atomic orbital electron populations 1.69914 1.06324 1.26934 1.51040 1.25031 0.94746 0.99226 0.94497 0.86775 0.80402 0.83540 0.78567 1.20258 1.21397 1.18885 1.21103 0.89306 0.94543 1.51016 0.90950 1.19503 0.97305 0.91394 0.96662 1.21718 0.90344 1.01091 1.02059 1.21778 0.96503 0.80568 1.02235 1.46068 1.06356 1.10775 1.71812 1.17756 0.83342 0.86325 0.77753 1.90797 1.55643 1.44012 1.50722 1.21411 0.90614 0.93326 1.00414 1.22505 0.96081 0.98587 0.92966 1.21687 1.01076 0.91495 0.96976 1.22304 0.91716 1.02205 0.94571 1.19948 0.90934 0.89857 1.04440 1.20369 0.82042 0.86771 0.71989 1.90917 1.81714 1.20611 1.46259 1.84690 1.16533 1.44091 1.84442 1.67512 1.39017 0.98998 1.06623 0.92707 0.96277 0.96720 0.91923 0.91891 0.91360 0.91360 0.75158 0.82301 0.82648 0.82586 0.72401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -14.69 9.66 -34.44 -0.33 -15.03 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 10 C -0.11 -2.14 5.27 -26.74 -0.14 -2.28 16 11 C 0.11 1.83 5.67 -4.04 -0.02 1.81 16 12 N -0.70 -10.16 5.54 -61.13 -0.34 -10.49 16 13 C 0.56 8.15 7.81 -12.15 -0.09 8.06 16 14 O -0.53 -9.02 16.32 5.37 0.09 -8.93 16 15 C 0.08 0.98 6.75 -83.02 -0.56 0.42 16 16 C -0.08 -0.70 9.63 -38.94 -0.38 -1.07 16 17 C -0.09 -0.53 10.16 -39.34 -0.40 -0.93 16 18 C -0.09 -0.64 9.63 -38.94 -0.38 -1.01 16 19 C 0.09 0.87 6.75 -83.05 -0.56 0.31 16 20 C 0.55 5.38 8.32 34.79 0.29 5.67 16 21 O -0.51 -5.67 17.11 -19.21 -0.33 -6.00 16 22 O -0.49 -4.10 13.24 -40.42 -0.54 -4.64 16 23 N -0.41 -4.70 9.29 -6.39 -0.06 -4.76 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 26 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.41 5.51 7.80 -40.82 -0.32 5.19 16 32 H 0.16 1.22 7.64 -52.49 -0.40 0.82 16 33 H 0.16 0.39 8.06 -52.49 -0.42 -0.03 16 34 H 0.16 0.86 7.64 -52.49 -0.40 0.46 16 35 H 0.42 1.45 9.11 45.56 0.42 1.86 16 LS Contribution 316.74 15.07 4.77 4.77 Total: -1.00 -35.00 316.74 -6.25 -41.26 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -3.17 Total: 1.41 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -2.78 Total: -2.60 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.38 Total: -42.26 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.78 Total: -19.57 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.00 -6.25 -41.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739068278.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.017 kcal (2) G-P(sol) polarization free energy of solvation -35.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds