Wall clock time and date at job start Tue Mar 31 2020 00:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00121 * 2 1 4 4 H 1.48500 * 109.47285 * 269.99552 * 3 2 1 5 5 H 1.48501 * 109.46911 * 29.99933 * 3 2 1 6 6 H 1.48506 * 109.47394 * 149.99512 * 3 2 1 7 7 C 1.37879 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99597 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00125 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47445 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47515 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.47437 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00127 * 179.97438 * 12 11 10 14 14 O 1.21501 * 120.00339 * 0.02562 * 13 12 11 15 15 C 1.48232 * 119.99943 * 179.97438 * 13 12 11 16 16 C 1.39644 * 119.65209 * 179.97438 * 15 13 12 17 17 C 1.38547 * 119.25104 * 180.02562 * 16 15 13 18 18 C 1.38584 * 118.55617 * 359.73063 * 17 16 15 19 19 C 1.39628 * 119.23900 * 0.52895 * 18 17 16 20 20 C 1.48128 * 119.65022 * 179.73561 * 19 18 17 21 21 O 1.21423 * 120.00463 * 359.72822 * 20 19 18 22 22 O 1.34674 * 119.99507 * 179.45073 * 20 19 18 23 23 N 1.32329 * 119.65078 * 0.02562 * 15 13 12 24 24 H 0.97003 * 119.99732 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47134 * 60.00062 * 9 7 2 26 26 H 1.09000 * 109.46779 * 300.00377 * 9 7 2 27 27 H 1.09005 * 109.47016 * 59.99309 * 10 9 7 28 28 H 1.09004 * 109.47126 * 300.00325 * 10 9 7 29 29 H 1.09000 * 109.46962 * 59.99863 * 11 10 9 30 30 H 1.09001 * 109.47562 * 299.99910 * 11 10 9 31 31 H 0.96997 * 119.99824 * 0.02562 * 12 11 10 32 32 H 1.07999 * 120.37574 * 359.97438 * 16 15 13 33 33 H 1.08001 * 120.71748 * 180.02562 * 17 16 15 34 34 H 1.07994 * 120.37515 * 180.28346 * 18 17 16 35 35 H 0.96699 * 116.99636 * 180.26849 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5515 -2.6366 0.0009 12 7 6.0398 -4.0178 0.0014 13 6 7.3649 -4.2641 0.0010 14 8 8.1545 -3.3406 0.0006 15 6 7.8590 -5.6616 0.0020 16 6 9.2334 -5.9085 0.0010 17 6 9.6861 -7.2179 0.0015 18 6 8.7521 -8.2417 0.0087 19 6 7.3923 -7.9244 0.0040 20 6 6.3862 -9.0116 0.0057 21 8 6.7455 -10.1714 0.0062 22 8 5.0729 -8.7135 0.0124 23 7 6.9930 -6.6621 0.0030 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6801 0.8911 26 1 3.8751 -0.6804 -0.8888 27 1 3.6584 -3.1502 -0.8892 28 1 3.6578 -3.1506 0.8907 29 1 5.9148 -2.1228 0.8909 30 1 5.9149 -2.1227 -0.8890 31 1 5.4095 -4.7550 0.0014 32 1 9.9357 -5.0879 -0.0010 33 1 10.7439 -7.4359 0.0011 34 1 9.0724 -9.2730 0.0139 35 1 4.4541 -9.4566 0.0173 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739068278.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:02 Heat of formation + Delta-G solvation = -125.058578 kcal Electronic energy + Delta-G solvation = -20109.513100 eV Core-core repulsion = 16685.212806 eV Total energy + Delta-G solvation = -3424.300294 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.08695 -41.01562 -39.90214 -37.22490 -37.06574 -35.22330 -34.02751 -33.32428 -32.72390 -29.11960 -26.61181 -26.10373 -24.35525 -22.89383 -22.25339 -21.51430 -19.51672 -19.28956 -18.83934 -18.21225 -17.11531 -17.05294 -17.03802 -16.73378 -16.51232 -16.17893 -15.70085 -15.19961 -14.77170 -14.61587 -14.56405 -14.28865 -13.80470 -13.61767 -13.23351 -12.74792 -12.70147 -12.64608 -12.28613 -11.95865 -11.78843 -11.59786 -11.44384 -11.32757 -11.18939 -10.80585 -10.75169 -10.57667 -10.12676 -8.28264 -6.32488 -0.78434 -0.30890 1.12959 1.38517 1.40060 1.52114 1.69557 1.75848 1.98610 2.37804 2.67341 2.82882 3.07490 3.59009 3.70253 3.83060 3.97140 4.06885 4.19378 4.25971 4.38493 4.50446 4.83588 4.88217 4.89299 4.92279 5.03362 5.28271 5.31503 5.38316 5.48335 5.56184 5.65819 6.16756 6.28714 6.49846 6.75714 6.89921 7.02498 7.32240 8.88374 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023934 B = 0.003247 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.588348 B = 8622.149625 C = 9765.986391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.245 1.245 7 C -0.532 4.532 8 H 0.035 0.965 9 C -0.010 4.010 10 C -0.102 4.102 11 C 0.124 3.876 12 N -0.700 5.700 13 C 0.565 3.435 14 O -0.564 6.564 15 C 0.060 3.940 16 C -0.078 4.078 17 C -0.065 4.065 18 C -0.075 4.075 19 C 0.066 3.934 20 C 0.550 3.450 21 O -0.525 6.525 22 O -0.495 6.495 23 N -0.427 5.427 24 H 0.266 0.734 25 H 0.024 0.976 26 H 0.023 0.977 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.417 0.583 32 H 0.168 0.832 33 H 0.201 0.799 34 H 0.178 0.822 35 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.992 -18.685 0.034 28.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.168 1.168 7 C -0.570 4.570 8 H 0.053 0.947 9 C -0.048 4.048 10 C -0.140 4.140 11 C 0.001 3.999 12 N -0.350 5.350 13 C 0.351 3.649 14 O -0.443 6.443 15 C -0.081 4.081 16 C -0.098 4.098 17 C -0.090 4.090 18 C -0.095 4.095 19 C -0.073 4.073 20 C 0.392 3.608 21 O -0.415 6.415 22 O -0.307 6.307 23 N -0.142 5.142 24 H 0.075 0.925 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.254 0.746 32 H 0.186 0.814 33 H 0.218 0.782 34 H 0.196 0.804 35 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 21.802 -17.717 0.036 28.093 hybrid contribution -0.538 -0.158 -0.020 0.561 sum 21.264 -17.876 0.016 27.779 Atomic orbital electron populations 1.70067 1.08319 1.28156 1.52722 1.26018 0.95613 1.03565 0.94156 0.85662 0.79567 0.78230 0.79227 1.19179 1.21112 1.16834 1.21476 0.92005 0.93219 1.50313 0.94686 1.19456 0.93985 0.94358 0.97040 1.21492 0.92126 0.98343 1.02051 1.21452 0.94452 0.81818 1.02167 1.45958 1.06929 1.10033 1.72130 1.18152 0.82697 0.87527 0.76555 1.90767 1.56132 1.45307 1.52054 1.21073 0.91914 0.91749 1.03405 1.22703 0.94745 1.00254 0.92111 1.22158 1.02961 0.89658 0.94271 1.22651 0.90658 1.03704 0.92482 1.20200 0.92276 0.89238 1.05604 1.20423 0.82359 0.86551 0.71430 1.90903 1.82022 1.21137 1.47403 1.84663 1.16600 1.45460 1.84009 1.67338 1.39769 0.99671 1.07402 0.92512 0.95785 0.95906 0.91980 0.91989 0.91497 0.91420 0.74596 0.81415 0.78155 0.80413 0.70268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 2 C 0.00 0.18 5.47 84.66 0.46 0.65 16 3 Si 0.95 44.31 27.47 68.60 1.88 46.19 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.24 -10.58 6.54 99.48 0.65 -9.93 16 7 C -0.53 -30.53 9.66 25.60 0.25 -30.28 16 8 H 0.03 2.20 7.99 -2.91 -0.02 2.17 16 9 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 10 C -0.10 -3.81 5.27 30.59 0.16 -3.64 16 11 C 0.12 3.99 5.67 86.38 0.49 4.48 16 12 N -0.70 -20.06 5.54 -465.61 -2.58 -22.64 16 13 C 0.57 16.02 7.81 86.90 0.68 16.70 16 14 O -0.56 -18.66 16.32 -3.72 -0.06 -18.73 16 15 C 0.06 1.33 6.75 42.07 0.28 1.61 16 16 C -0.08 -1.15 9.63 22.68 0.22 -0.93 16 17 C -0.07 -0.53 10.16 22.43 0.23 -0.31 16 18 C -0.08 -0.86 9.63 22.69 0.22 -0.64 16 19 C 0.07 1.21 6.75 42.02 0.28 1.49 16 20 C 0.55 10.29 8.32 70.45 0.59 10.87 16 21 O -0.53 -11.10 17.11 20.08 0.34 -10.75 16 22 O -0.49 -8.06 13.24 -55.83 -0.74 -8.80 16 23 N -0.43 -9.51 9.29 -174.12 -1.62 -11.13 16 24 H 0.27 15.62 8.31 -92.71 -0.77 14.84 16 25 H 0.02 1.08 7.20 -2.39 -0.02 1.06 16 26 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 27 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 28 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 29 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 30 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.42 11.11 7.80 -92.71 -0.72 10.39 16 32 H 0.17 2.17 7.64 -2.91 -0.02 2.15 16 33 H 0.20 -0.15 8.06 -2.91 -0.02 -0.18 16 34 H 0.18 1.28 7.64 -2.91 -0.02 1.26 16 35 H 0.43 2.76 9.11 -74.06 -0.67 2.09 16 Total: -1.00 -76.97 316.74 1.20 -75.76 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -0.31 Total: 10.08 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 3.98 Total: -0.36 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -3.90 Total: -93.41 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.46 Total: -38.28 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.88 Total: 46.19 kcal Total: -76.97 1.20 -75.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739068278.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.294 kcal (2) G-P(sol) polarization free energy of solvation -76.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds