Wall clock time and date at job start Tue Mar 31 2020 00:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99545 * 2 1 4 4 H 1.48505 * 109.46973 * 239.99667 * 3 2 1 5 5 H 1.48496 * 109.47129 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46904 * 119.99866 * 3 2 1 7 7 C 1.37877 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99949 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47026 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46985 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47131 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00084 * 180.02562 * 12 11 10 14 14 O 1.21492 * 120.00010 * 359.97438 * 13 12 11 15 15 C 1.48346 * 119.99816 * 179.97438 * 13 12 11 16 16 C 1.39305 * 119.56323 * 179.97438 * 15 13 12 17 17 C 1.38445 * 119.19439 * 179.97438 * 16 15 13 18 18 C 1.39909 * 118.35395 * 0.02562 * 17 16 15 19 19 C 1.47891 * 120.47107 * 179.97438 * 18 17 16 20 20 O 1.21454 * 119.99624 * 359.97438 * 19 18 17 21 21 O 1.34692 * 120.00409 * 180.02562 * 19 18 17 22 22 C 1.39777 * 119.06323 * 0.02562 * 18 17 16 23 23 N 1.31412 * 120.71335 * 359.97438 * 22 18 17 24 24 H 0.96999 * 120.00601 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46826 * 59.99911 * 9 7 2 26 26 H 1.09001 * 109.46831 * 300.00230 * 9 7 2 27 27 H 1.09000 * 109.47055 * 60.00154 * 10 9 7 28 28 H 1.09006 * 109.47261 * 300.00206 * 10 9 7 29 29 H 1.09000 * 109.46978 * 60.00254 * 11 10 9 30 30 H 1.08990 * 109.47370 * 299.99915 * 11 10 9 31 31 H 0.97002 * 119.99392 * 0.02562 * 12 11 10 32 32 H 1.08002 * 120.39866 * 0.25252 * 16 15 13 33 33 H 1.07996 * 120.82074 * 180.02562 * 17 16 15 34 34 H 0.96701 * 117.00206 * 180.02562 * 21 19 18 35 35 H 1.08002 * 119.64298 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2454 -3.6620 0.0027 11 6 1.4805 -4.9871 0.0046 12 7 2.4325 -6.1006 0.0049 13 6 1.9834 -7.3713 0.0060 14 8 0.7889 -7.5934 0.0071 15 6 2.9475 -8.4988 0.0058 16 6 2.4732 -9.8086 0.0074 17 6 3.3797 -10.8550 0.0067 18 6 4.7454 -10.5510 0.0049 19 6 5.7544 -11.6323 0.0046 20 8 5.3996 -12.7939 0.0064 21 8 7.0667 -11.3290 0.0034 22 6 5.1427 -9.2109 0.0044 23 7 4.2503 -8.2463 0.0052 24 1 -0.4851 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8880 26 1 0.6248 -2.5563 0.8920 27 1 2.8720 -3.6035 0.8927 28 1 2.8721 -3.6050 -0.8873 29 1 0.8535 -5.0459 -0.8852 30 1 0.8542 -5.0439 0.8947 31 1 3.3862 -5.9232 0.0045 32 1 1.4113 -10.0054 0.0047 33 1 3.0410 -11.8805 0.0075 34 1 7.6885 -12.0695 0.0029 35 1 6.1945 -8.9656 0.0035 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739069091.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:05 Heat of formation + Delta-G solvation = -105.170193 kcal Electronic energy + Delta-G solvation = -19743.512898 eV Core-core repulsion = 16320.075029 eV Total energy + Delta-G solvation = -3423.437869 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.33438 -40.25993 -38.92702 -36.67617 -35.55351 -33.60436 -33.02767 -32.21277 -31.11528 -27.35891 -25.89034 -24.13354 -23.34443 -22.27204 -20.84261 -20.39345 -18.90256 -18.23610 -17.63382 -16.95678 -16.34138 -16.25672 -15.57024 -15.41980 -15.20320 -14.53498 -14.45071 -14.44510 -13.81086 -13.63323 -13.52955 -13.00377 -12.28711 -12.15222 -11.86869 -11.77580 -11.38087 -10.88987 -10.78204 -10.65333 -10.56716 -10.48703 -9.98449 -9.87890 -9.79646 -9.43009 -9.14272 -8.87317 -8.37206 -6.02028 -4.05157 -0.31408 0.67044 1.77835 2.34961 2.64428 3.03245 3.32361 3.37074 3.39164 3.47407 3.74372 4.18615 4.23911 4.42830 4.46272 4.62526 4.74557 5.21649 5.33724 5.39823 5.46923 5.67297 5.73239 5.87002 5.92326 6.12178 6.36702 6.56999 6.77102 6.97527 7.11067 7.29512 7.60900 7.62560 7.74881 7.96395 8.15949 8.37713 9.01237 9.59032 11.09221 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036110 B = 0.002549 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.211667 B =10980.483712 C =11729.946400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.113 3.887 12 N -0.699 5.699 13 C 0.558 3.442 14 O -0.530 6.530 15 C 0.123 3.877 16 C -0.125 4.125 17 C -0.014 4.014 18 C -0.170 4.170 19 C 0.535 3.465 20 O -0.508 6.508 21 O -0.508 6.508 22 C 0.161 3.839 23 N -0.465 5.465 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.410 0.590 32 H 0.162 0.838 33 H 0.157 0.843 34 H 0.419 0.581 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.343 -23.384 0.006 26.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.009 4.009 12 N -0.349 5.349 13 C 0.341 3.659 14 O -0.407 6.407 15 C -0.015 4.015 16 C -0.146 4.146 17 C -0.039 4.039 18 C -0.174 4.174 19 C 0.378 3.622 20 O -0.397 6.397 21 O -0.320 6.320 22 C 0.001 3.999 23 N -0.176 5.176 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.246 0.754 32 H 0.179 0.821 33 H 0.175 0.825 34 H 0.279 0.721 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 11.175 -22.468 0.007 25.094 hybrid contribution 1.113 -0.375 0.000 1.174 sum 12.288 -22.843 0.008 25.938 Atomic orbital electron populations 1.69952 1.06058 1.26823 1.50488 1.25028 0.94863 0.99306 0.95261 0.86634 0.79552 0.83059 0.78606 1.20236 1.21290 1.20233 1.21167 0.92994 0.90919 1.51047 0.92644 1.19029 0.93822 0.90809 0.97683 1.21905 0.99813 0.93059 1.01163 1.21793 0.91826 0.84934 1.02363 1.46119 1.11964 1.05186 1.71585 1.17875 0.87084 0.82809 0.78149 1.90808 1.15148 1.84488 1.50220 1.21736 0.90814 0.93992 0.94917 1.22171 1.02620 0.91309 0.98497 1.21782 0.90552 1.01142 0.90459 1.20250 0.93069 0.93926 1.10105 1.20573 0.81778 0.87679 0.72153 1.90917 1.81662 1.21279 1.45859 1.84531 1.17140 1.44778 1.85577 1.23248 1.00175 0.86599 0.89920 1.67728 1.01480 1.36775 1.11595 0.92862 0.96227 0.96240 0.92534 0.92526 0.91293 0.91286 0.75371 0.82069 0.82517 0.72124 0.80372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.11 1.95 5.67 -4.04 -0.02 1.92 16 12 N -0.70 -10.27 5.54 -61.09 -0.34 -10.60 16 13 C 0.56 8.25 7.82 -12.10 -0.09 8.15 16 14 O -0.53 -9.32 16.31 5.37 0.09 -9.23 16 15 C 0.12 1.45 6.75 -82.93 -0.56 0.89 16 16 C -0.13 -1.20 9.62 -39.11 -0.38 -1.58 16 17 C -0.01 -0.11 9.71 -38.88 -0.38 -0.49 16 18 C -0.17 -1.37 5.89 -104.74 -0.62 -1.99 16 19 C 0.54 4.07 8.28 34.68 0.29 4.36 16 20 O -0.51 -5.23 17.20 -19.23 -0.33 -5.56 16 21 O -0.51 -2.35 12.70 -40.47 -0.51 -2.87 16 22 C 0.16 1.32 10.78 -17.16 -0.18 1.14 16 23 N -0.46 -4.95 9.52 -9.46 -0.09 -5.04 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.41 5.34 7.80 -40.82 -0.32 5.02 16 32 H 0.16 1.43 7.63 -52.49 -0.40 1.03 16 33 H 0.16 1.01 7.73 -52.49 -0.41 0.60 16 34 H 0.42 0.13 9.11 45.56 0.42 0.55 16 35 H 0.18 1.01 7.62 -52.49 -0.40 0.61 16 LS Contribution 319.54 15.07 4.82 4.82 Total: -1.00 -34.10 319.54 -6.48 -40.57 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -3.19 Total: 0.39 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.64 Total: -2.91 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.31 Total: -41.60 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.76 Total: -17.65 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.10 -6.48 -40.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739069091.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.597 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds