Wall clock time and date at job start Tue Mar 31 2020 00:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99545 * 2 1 4 4 H 1.48505 * 109.46973 * 239.99667 * 3 2 1 5 5 H 1.48496 * 109.47129 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46904 * 119.99866 * 3 2 1 7 7 C 1.37877 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99949 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47026 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46985 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47131 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00084 * 180.02562 * 12 11 10 14 14 O 1.21492 * 120.00010 * 359.97438 * 13 12 11 15 15 C 1.48346 * 119.99816 * 179.97438 * 13 12 11 16 16 C 1.39305 * 119.56323 * 179.97438 * 15 13 12 17 17 C 1.38445 * 119.19439 * 179.97438 * 16 15 13 18 18 C 1.39909 * 118.35395 * 0.02562 * 17 16 15 19 19 C 1.47891 * 120.47107 * 179.97438 * 18 17 16 20 20 O 1.21454 * 119.99624 * 359.97438 * 19 18 17 21 21 O 1.34692 * 120.00409 * 180.02562 * 19 18 17 22 22 C 1.39777 * 119.06323 * 0.02562 * 18 17 16 23 23 N 1.31412 * 120.71335 * 359.97438 * 22 18 17 24 24 H 0.96999 * 120.00601 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46826 * 59.99911 * 9 7 2 26 26 H 1.09001 * 109.46831 * 300.00230 * 9 7 2 27 27 H 1.09000 * 109.47055 * 60.00154 * 10 9 7 28 28 H 1.09006 * 109.47261 * 300.00206 * 10 9 7 29 29 H 1.09000 * 109.46978 * 60.00254 * 11 10 9 30 30 H 1.08990 * 109.47370 * 299.99915 * 11 10 9 31 31 H 0.97002 * 119.99392 * 0.02562 * 12 11 10 32 32 H 1.08002 * 120.39866 * 0.25252 * 16 15 13 33 33 H 1.07996 * 120.82074 * 180.02562 * 17 16 15 34 34 H 0.96701 * 117.00206 * 180.02562 * 21 19 18 35 35 H 1.08002 * 119.64298 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2454 -3.6620 0.0027 11 6 1.4805 -4.9871 0.0046 12 7 2.4325 -6.1006 0.0049 13 6 1.9834 -7.3713 0.0060 14 8 0.7889 -7.5934 0.0071 15 6 2.9475 -8.4988 0.0058 16 6 2.4732 -9.8086 0.0074 17 6 3.3797 -10.8550 0.0067 18 6 4.7454 -10.5510 0.0049 19 6 5.7544 -11.6323 0.0046 20 8 5.3996 -12.7939 0.0064 21 8 7.0667 -11.3290 0.0034 22 6 5.1427 -9.2109 0.0044 23 7 4.2503 -8.2463 0.0052 24 1 -0.4851 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8880 26 1 0.6248 -2.5563 0.8920 27 1 2.8720 -3.6035 0.8927 28 1 2.8721 -3.6050 -0.8873 29 1 0.8535 -5.0459 -0.8852 30 1 0.8542 -5.0439 0.8947 31 1 3.3862 -5.9232 0.0045 32 1 1.4113 -10.0054 0.0047 33 1 3.0410 -11.8805 0.0075 34 1 7.6885 -12.0695 0.0029 35 1 6.1945 -8.9656 0.0035 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739069091.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:05 Heat of formation + Delta-G solvation = -130.281595 kcal Electronic energy + Delta-G solvation = -19744.601810 eV Core-core repulsion = 16320.075029 eV Total energy + Delta-G solvation = -3424.526781 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.07072 -41.04438 -39.92272 -37.18956 -37.05147 -35.27228 -34.04590 -33.12558 -32.68209 -28.91439 -27.03702 -24.98891 -24.77690 -23.12890 -22.31892 -21.66148 -19.56203 -19.11776 -18.50145 -18.35090 -17.70153 -16.94808 -16.72381 -16.66545 -16.35508 -16.03066 -15.69778 -15.39654 -14.62981 -14.62553 -14.35472 -14.21780 -13.78276 -13.74256 -13.50861 -12.71385 -12.65211 -12.55938 -12.41672 -12.01618 -11.75949 -11.67243 -11.37255 -11.26652 -11.20278 -10.75812 -10.57695 -10.53319 -10.15282 -8.18169 -6.29456 -1.06637 0.00102 1.04617 1.42839 1.45803 1.53595 1.74627 1.82066 1.95657 2.43447 2.64556 2.91117 3.15533 3.53275 3.58119 3.67871 3.86959 4.10502 4.14740 4.20728 4.55080 4.58191 4.75160 4.81995 4.93878 4.95284 5.17207 5.23171 5.33808 5.47980 5.52925 5.71963 5.85438 6.21690 6.26713 6.56299 6.87610 6.88085 7.01351 7.39938 8.93652 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036110 B = 0.002549 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.211667 B =10980.483712 C =11729.946400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.024 3.976 10 C -0.103 4.103 11 C 0.126 3.874 12 N -0.693 5.693 13 C 0.558 3.442 14 O -0.565 6.565 15 C 0.104 3.896 16 C -0.122 4.122 17 C -0.007 4.007 18 C -0.165 4.165 19 C 0.545 3.455 20 O -0.537 6.537 21 O -0.497 6.497 22 C 0.166 3.834 23 N -0.477 5.477 24 H 0.263 0.737 25 H -0.006 1.006 26 H -0.006 1.006 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.420 0.580 32 H 0.164 0.836 33 H 0.175 0.825 34 H 0.440 0.560 35 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.116 -24.198 0.005 28.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.013 4.013 10 C -0.141 4.141 11 C 0.003 3.997 12 N -0.344 5.344 13 C 0.343 3.657 14 O -0.444 6.444 15 C -0.033 4.033 16 C -0.143 4.143 17 C -0.032 4.032 18 C -0.168 4.168 19 C 0.389 3.611 20 O -0.428 6.428 21 O -0.311 6.311 22 C 0.005 3.995 23 N -0.188 5.188 24 H 0.072 0.928 25 H 0.013 0.987 26 H 0.012 0.988 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.258 0.742 32 H 0.181 0.819 33 H 0.192 0.808 34 H 0.303 0.697 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 14.010 -23.296 0.007 27.184 hybrid contribution 0.332 -0.224 0.000 0.400 sum 14.341 -23.520 0.007 27.547 Atomic orbital electron populations 1.70099 1.07890 1.27853 1.51645 1.26012 0.95753 1.03505 0.94799 0.85478 0.78198 0.77977 0.79255 1.19059 1.21177 1.19051 1.21656 0.93746 0.92053 1.50535 0.91606 1.18938 0.94391 0.92775 0.95238 1.21608 0.98507 0.91774 1.02180 1.21396 0.91797 0.85062 1.01444 1.45909 1.11962 1.04723 1.71779 1.18303 0.87254 0.83266 0.76858 1.90782 1.16850 1.85051 1.51708 1.21281 0.90928 0.93307 0.97803 1.22205 1.03134 0.90849 0.98127 1.21964 0.90469 1.01457 0.89333 1.20411 0.93349 0.94245 1.08841 1.20369 0.82514 0.86789 0.71412 1.90921 1.82284 1.22270 1.47352 1.84486 1.16137 1.45869 1.84653 1.23652 1.00845 0.86179 0.88831 1.67663 1.01135 1.37833 1.12159 0.92809 0.98745 0.98757 0.91421 0.91410 0.92342 0.92334 0.74190 0.81859 0.80797 0.69705 0.77670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 3 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.54 -30.18 9.11 25.60 0.23 -29.95 16 8 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.10 -3.97 5.27 30.59 0.16 -3.80 16 11 C 0.13 4.43 5.67 86.38 0.49 4.92 16 12 N -0.69 -20.21 5.54 -465.49 -2.58 -22.79 16 13 C 0.56 16.57 7.82 86.94 0.68 17.25 16 14 O -0.56 -20.34 16.31 -3.69 -0.06 -20.40 16 15 C 0.10 2.36 6.75 41.96 0.28 2.64 16 16 C -0.12 -2.23 9.62 22.58 0.22 -2.02 16 17 C -0.01 -0.10 9.71 22.72 0.22 0.13 16 18 C -0.16 -2.25 5.89 -19.94 -0.12 -2.36 16 19 C 0.55 6.78 8.28 70.38 0.58 7.37 16 20 O -0.54 -9.84 17.20 19.99 0.34 -9.50 16 21 O -0.50 -2.89 12.70 -56.02 -0.71 -3.60 16 22 C 0.17 2.28 10.78 85.13 0.92 3.20 16 23 N -0.48 -9.35 9.52 -183.86 -1.75 -11.10 16 24 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 25 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 26 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 27 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.42 10.50 7.80 -92.71 -0.72 9.78 16 32 H 0.16 2.85 7.63 -2.91 -0.02 2.83 16 33 H 0.17 1.86 7.73 -2.91 -0.02 1.84 16 34 H 0.44 -1.24 9.11 -74.06 -0.67 -1.91 16 35 H 0.21 1.59 7.62 -2.91 -0.02 1.57 16 Total: -1.00 -74.06 319.54 1.58 -72.49 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -0.25 Total: 6.76 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 4.28 Total: -0.94 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -4.05 Total: -90.53 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.43 Total: -33.50 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -74.06 1.58 -72.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739069091.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.795 kcal (2) G-P(sol) polarization free energy of solvation -74.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds