Wall clock time and date at job start Tue Mar 31 2020 00:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00463 * 2 1 4 4 H 1.48493 * 109.47418 * 240.00631 * 3 2 1 5 5 H 1.48499 * 109.46660 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46738 * 119.99901 * 3 2 1 7 7 C 1.37879 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00686 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99707 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47096 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.47151 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47001 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99953 * 179.97438 * 12 11 10 14 14 O 1.21532 * 119.99737 * 0.02562 * 13 12 11 15 15 C 1.48009 * 120.00114 * 179.97438 * 13 12 11 16 16 C 1.39861 * 120.45911 * 180.02562 * 15 13 12 17 17 C 1.38465 * 118.35969 * 179.97438 * 16 15 13 18 18 C 1.39335 * 119.18273 * 0.02562 * 17 16 15 19 19 C 1.48245 * 119.57050 * 179.97438 * 18 17 16 20 20 O 1.21414 * 120.00367 * 359.97438 * 19 18 17 21 21 O 1.34659 * 120.00140 * 179.97438 * 19 18 17 22 22 N 1.32736 * 120.85407 * 359.97438 * 18 17 16 23 23 C 1.31399 * 121.79830 * 0.04312 * 22 18 17 24 24 H 0.97006 * 119.99838 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47161 * 60.00085 * 9 7 2 26 26 H 1.09003 * 109.47260 * 300.00129 * 9 7 2 27 27 H 1.09000 * 109.47124 * 60.00520 * 10 9 7 28 28 H 1.08990 * 109.47466 * 300.00007 * 10 9 7 29 29 H 1.09000 * 109.46527 * 60.00344 * 11 10 9 30 30 H 1.08998 * 109.46940 * 300.00146 * 11 10 9 31 31 H 0.97001 * 120.00186 * 0.02562 * 12 11 10 32 32 H 1.08004 * 120.82223 * 359.95926 * 16 15 13 33 33 H 1.08002 * 120.40626 * 179.72810 * 17 16 15 34 34 H 0.96700 * 117.00645 * 179.97438 * 21 19 18 35 35 H 1.07999 * 119.64006 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4320 -6.1006 -0.0018 13 6 1.9828 -7.3713 -0.0009 14 8 0.7879 -7.5933 0.0000 15 6 2.9445 -8.4964 -0.0021 16 6 2.4889 -9.8186 -0.0016 17 6 3.4266 -10.8375 -0.0034 18 6 4.7817 -10.5135 -0.0049 19 6 5.7930 -11.5975 -0.0061 20 8 5.4384 -12.7587 -0.0054 21 8 7.1050 -11.2943 -0.0081 22 7 5.1789 -9.2470 -0.0052 23 6 4.3205 -8.2521 -0.0033 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8724 -3.6048 0.8877 28 1 2.8711 -3.6040 -0.8922 29 1 0.8525 -5.0447 -0.8905 30 1 0.8544 -5.0450 0.8895 31 1 3.3857 -5.9234 -0.0021 32 1 1.4317 -10.0397 0.0002 33 1 3.1114 -11.8705 0.0013 34 1 7.7269 -12.0348 -0.0085 35 1 4.6822 -7.2345 -0.0032 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739069965.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:04 Heat of formation + Delta-G solvation = -101.736446 kcal Electronic energy + Delta-G solvation = -19752.817681 eV Core-core repulsion = 16329.528711 eV Total energy + Delta-G solvation = -3423.288970 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.36154 -40.24356 -39.03548 -36.61040 -35.65608 -33.55421 -33.14611 -32.36638 -31.06124 -27.39442 -25.94637 -24.18285 -23.36810 -22.36608 -20.96464 -20.36952 -18.91804 -18.26147 -17.63423 -17.03733 -16.35598 -16.28573 -15.56298 -15.55117 -15.23921 -14.54063 -14.46982 -14.41336 -13.77369 -13.70054 -13.58522 -13.03269 -12.33198 -12.03696 -11.92477 -11.85355 -11.41144 -10.92514 -10.82421 -10.70912 -10.51666 -10.49352 -9.98272 -9.94528 -9.85426 -9.48621 -9.18880 -9.00021 -8.40982 -6.05706 -4.09168 -0.32720 0.64348 1.71699 2.31564 2.69963 3.00491 3.29753 3.34841 3.36598 3.39882 3.63687 4.21312 4.27648 4.40838 4.47645 4.51000 4.69519 5.04779 5.30194 5.40600 5.48115 5.61963 5.65987 5.85610 5.90100 6.04664 6.24672 6.49398 6.68884 6.90855 7.02701 7.40699 7.43488 7.57821 7.69555 7.92170 8.04568 8.33040 8.97183 9.55357 11.05476 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.035761 B = 0.002551 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.796085 B =10971.442186 C =11728.489315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.115 3.885 12 N -0.714 5.714 13 C 0.553 3.447 14 O -0.530 6.530 15 C -0.146 4.146 16 C -0.025 4.025 17 C -0.110 4.110 18 C 0.103 3.897 19 C 0.544 3.456 20 O -0.504 6.504 21 O -0.490 6.490 22 N -0.435 5.435 23 C 0.130 3.870 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.399 0.601 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.415 0.585 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.892 -22.047 -0.005 24.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.160 4.160 11 C -0.007 4.007 12 N -0.365 5.365 13 C 0.337 3.663 14 O -0.407 6.407 15 C -0.151 4.151 16 C -0.051 4.051 17 C -0.130 4.130 18 C -0.034 4.034 19 C 0.386 3.614 20 O -0.391 6.391 21 O -0.300 6.300 22 N -0.146 5.146 23 C -0.031 4.031 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.234 0.766 32 H 0.179 0.821 33 H 0.177 0.823 34 H 0.274 0.726 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 10.404 -21.903 -0.006 24.248 hybrid contribution 0.463 0.449 0.001 0.645 sum 10.867 -21.454 -0.005 24.049 Atomic orbital electron populations 1.69950 1.06072 1.26872 1.50347 1.25027 0.94863 0.99330 0.95203 0.86635 0.79564 0.83044 0.78617 1.20218 1.21267 1.20222 1.21153 0.92970 0.90905 1.51239 0.92649 1.19025 0.93813 0.90789 0.97716 1.21918 0.99872 0.93145 1.01092 1.21774 0.91742 0.84723 1.02471 1.46173 1.11184 1.05647 1.73482 1.17990 0.87816 0.82792 0.77671 1.90807 1.15782 1.84603 1.49509 1.21492 0.95458 0.95566 1.02622 1.21820 1.01697 0.90278 0.91341 1.22122 0.91420 1.02063 0.97384 1.20142 0.90747 0.90514 1.01962 1.20469 0.81968 0.86885 0.72087 1.90924 1.81814 1.20507 1.45845 1.84681 1.16632 1.44024 1.84643 1.67662 1.38846 0.98820 1.09239 1.23111 0.88025 0.98774 0.93203 0.92823 0.96228 0.96222 0.92534 0.92523 0.91251 0.91260 0.76582 0.82057 0.82349 0.72632 0.81066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 8 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.22 5.27 -26.73 -0.14 -2.36 16 11 C 0.11 1.83 5.67 -4.04 -0.02 1.81 16 12 N -0.71 -8.96 5.51 -61.20 -0.34 -9.29 16 13 C 0.55 7.27 7.79 -12.25 -0.10 7.18 16 14 O -0.53 -8.88 16.41 5.34 0.09 -8.79 16 15 C -0.15 -1.50 5.90 -104.72 -0.62 -2.11 16 16 C -0.03 -0.23 9.71 -38.89 -0.38 -0.60 16 17 C -0.11 -0.92 9.62 -39.09 -0.38 -1.29 16 18 C 0.10 1.00 6.75 -82.95 -0.56 0.44 16 19 C 0.54 5.02 8.33 34.84 0.29 5.31 16 20 O -0.50 -5.45 17.10 -19.20 -0.33 -5.78 16 21 O -0.49 -3.51 13.24 -40.38 -0.53 -4.04 16 22 N -0.44 -4.46 10.10 -9.49 -0.10 -4.56 16 23 C 0.13 1.19 10.71 -17.17 -0.18 1.01 16 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.40 3.80 6.53 -40.82 -0.27 3.53 16 32 H 0.16 1.32 7.73 -52.48 -0.41 0.91 16 33 H 0.16 1.05 7.63 -52.49 -0.40 0.65 16 34 H 0.41 0.84 9.11 45.56 0.42 1.26 16 35 H 0.17 1.13 6.41 -52.49 -0.34 0.79 16 LS Contribution 318.09 15.07 4.79 4.79 Total: -1.00 -34.40 318.09 -6.40 -40.80 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -3.07 Total: -0.41 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -2.63 Total: -3.21 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.30 Total: -39.43 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.78 Total: -18.61 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.40 -6.40 -40.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739069965.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.935 kcal (2) G-P(sol) polarization free energy of solvation -34.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds