Wall clock time and date at job start Tue Mar 31 2020 00:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00463 * 2 1 4 4 H 1.48493 * 109.47418 * 240.00631 * 3 2 1 5 5 H 1.48499 * 109.46660 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46738 * 119.99901 * 3 2 1 7 7 C 1.37879 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00686 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99707 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47096 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.47151 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47001 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99953 * 179.97438 * 12 11 10 14 14 O 1.21532 * 119.99737 * 0.02562 * 13 12 11 15 15 C 1.48009 * 120.00114 * 179.97438 * 13 12 11 16 16 C 1.39861 * 120.45911 * 180.02562 * 15 13 12 17 17 C 1.38465 * 118.35969 * 179.97438 * 16 15 13 18 18 C 1.39335 * 119.18273 * 0.02562 * 17 16 15 19 19 C 1.48245 * 119.57050 * 179.97438 * 18 17 16 20 20 O 1.21414 * 120.00367 * 359.97438 * 19 18 17 21 21 O 1.34659 * 120.00140 * 179.97438 * 19 18 17 22 22 N 1.32736 * 120.85407 * 359.97438 * 18 17 16 23 23 C 1.31399 * 121.79830 * 0.04312 * 22 18 17 24 24 H 0.97006 * 119.99838 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47161 * 60.00085 * 9 7 2 26 26 H 1.09003 * 109.47260 * 300.00129 * 9 7 2 27 27 H 1.09000 * 109.47124 * 60.00520 * 10 9 7 28 28 H 1.08990 * 109.47466 * 300.00007 * 10 9 7 29 29 H 1.09000 * 109.46527 * 60.00344 * 11 10 9 30 30 H 1.08998 * 109.46940 * 300.00146 * 11 10 9 31 31 H 0.97001 * 120.00186 * 0.02562 * 12 11 10 32 32 H 1.08004 * 120.82223 * 359.95926 * 16 15 13 33 33 H 1.08002 * 120.40626 * 179.72810 * 17 16 15 34 34 H 0.96700 * 117.00645 * 179.97438 * 21 19 18 35 35 H 1.07999 * 119.64006 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4320 -6.1006 -0.0018 13 6 1.9828 -7.3713 -0.0009 14 8 0.7879 -7.5933 0.0000 15 6 2.9445 -8.4964 -0.0021 16 6 2.4889 -9.8186 -0.0016 17 6 3.4266 -10.8375 -0.0034 18 6 4.7817 -10.5135 -0.0049 19 6 5.7930 -11.5975 -0.0061 20 8 5.4384 -12.7587 -0.0054 21 8 7.1050 -11.2943 -0.0081 22 7 5.1789 -9.2470 -0.0052 23 6 4.3205 -8.2521 -0.0033 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8724 -3.6048 0.8877 28 1 2.8711 -3.6040 -0.8922 29 1 0.8525 -5.0447 -0.8905 30 1 0.8544 -5.0450 0.8895 31 1 3.3857 -5.9234 -0.0021 32 1 1.4317 -10.0397 0.0002 33 1 3.1114 -11.8705 0.0013 34 1 7.7269 -12.0348 -0.0085 35 1 4.6822 -7.2345 -0.0032 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739069965.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:03 Heat of formation + Delta-G solvation = -127.147950 kcal Electronic energy + Delta-G solvation = -19753.919607 eV Core-core repulsion = 16329.528711 eV Total energy + Delta-G solvation = -3424.390896 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.11517 -41.07418 -39.96608 -37.25130 -37.04601 -35.28038 -33.95291 -33.49687 -32.45749 -28.87773 -27.07826 -25.03046 -24.79294 -23.26196 -22.33385 -21.61396 -19.62856 -19.09015 -18.56708 -18.39678 -17.74814 -17.00017 -16.74297 -16.64631 -16.38341 -16.04538 -15.58186 -15.41235 -14.71561 -14.60581 -14.37928 -14.18836 -13.82941 -13.69480 -13.51135 -12.70987 -12.66913 -12.54214 -12.40628 -12.12851 -11.73124 -11.64897 -11.34234 -11.23428 -11.16429 -10.77244 -10.62117 -10.52659 -10.16251 -8.17735 -6.28740 -1.08753 -0.04252 0.96854 1.43597 1.46044 1.53758 1.70777 1.78426 1.96202 2.43843 2.61505 2.97025 3.16386 3.43267 3.59836 3.68941 3.79210 4.03768 4.16445 4.24257 4.45038 4.57530 4.73998 4.81069 4.96816 4.96919 5.16659 5.20405 5.34711 5.36272 5.54562 5.73972 5.86924 6.24099 6.34431 6.41433 6.88269 6.89127 7.03354 7.40889 8.94006 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.035761 B = 0.002551 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.796085 B =10971.442186 C =11728.489315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.104 4.104 11 C 0.129 3.871 12 N -0.703 5.703 13 C 0.557 3.443 14 O -0.571 6.571 15 C -0.155 4.155 16 C -0.021 4.021 17 C -0.102 4.102 18 C 0.094 3.906 19 C 0.549 3.451 20 O -0.524 6.524 21 O -0.489 6.489 22 N -0.449 5.449 23 C 0.138 3.862 24 H 0.263 0.737 25 H -0.007 1.007 26 H -0.007 1.007 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.416 0.584 32 H 0.168 0.832 33 H 0.176 0.824 34 H 0.436 0.564 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.245 -22.476 -0.007 26.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.142 4.142 11 C 0.005 3.995 12 N -0.355 5.355 13 C 0.344 3.656 14 O -0.451 6.451 15 C -0.160 4.160 16 C -0.047 4.047 17 C -0.122 4.122 18 C -0.042 4.042 19 C 0.392 3.608 20 O -0.413 6.413 21 O -0.302 6.302 22 N -0.160 5.160 23 C -0.023 4.023 24 H 0.071 0.929 25 H 0.011 0.989 26 H 0.011 0.989 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.255 0.745 32 H 0.185 0.815 33 H 0.193 0.807 34 H 0.299 0.701 35 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 12.835 -22.353 -0.008 25.776 hybrid contribution -0.237 0.514 0.002 0.566 sum 12.598 -21.840 -0.006 25.213 Atomic orbital electron populations 1.70099 1.07905 1.27796 1.51739 1.26002 0.95717 1.03485 0.94891 0.85504 0.78203 0.78098 0.79257 1.19045 1.21366 1.19055 1.21672 0.93799 0.92033 1.50351 0.91446 1.18946 0.94487 0.92913 0.95158 1.21622 0.98498 0.91617 1.02454 1.21341 0.91804 0.85000 1.01352 1.45889 1.11584 1.04758 1.73222 1.18324 0.87689 0.83243 0.76377 1.90791 1.17706 1.85177 1.51411 1.21238 0.95318 0.94782 1.04676 1.21956 1.02249 0.90053 0.90491 1.22251 0.90789 1.02669 0.96510 1.20406 0.91474 0.90670 1.01648 1.20375 0.82494 0.86353 0.71594 1.90919 1.82236 1.21155 1.46972 1.84636 1.16201 1.45412 1.83975 1.67711 1.39114 0.99157 1.10041 1.23424 0.87284 0.99685 0.91901 0.92870 0.98882 0.98875 0.91077 0.91067 0.92537 0.92545 0.74520 0.81478 0.80677 0.70146 0.78686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.17 13.29 21.45 0.28 -55.88 16 2 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 3 Si 0.96 42.93 29.54 68.60 2.03 44.96 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.54 -29.23 9.11 25.60 0.23 -28.99 16 8 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.02 1.13 4.97 29.85 0.15 1.28 16 10 C -0.10 -3.67 5.27 30.60 0.16 -3.51 16 11 C 0.13 4.07 5.67 86.38 0.49 4.56 16 12 N -0.70 -16.59 5.51 -465.81 -2.57 -19.16 16 13 C 0.56 14.13 7.79 86.83 0.68 14.81 16 14 O -0.57 -19.15 16.41 -3.82 -0.06 -19.22 16 15 C -0.15 -2.93 5.90 -19.93 -0.12 -3.05 16 16 C -0.02 -0.35 9.71 22.72 0.22 -0.13 16 17 C -0.10 -1.53 9.62 22.59 0.22 -1.31 16 18 C 0.09 1.65 6.75 41.93 0.28 1.93 16 19 C 0.55 9.18 8.33 70.48 0.59 9.77 16 20 O -0.52 -10.54 17.10 20.12 0.34 -10.19 16 21 O -0.49 -5.99 13.24 -55.68 -0.74 -6.73 16 22 N -0.45 -8.26 10.10 -183.95 -1.86 -10.11 16 23 C 0.14 2.21 10.71 85.12 0.91 3.12 16 24 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 25 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 26 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 27 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.42 6.84 6.53 -92.71 -0.61 6.23 16 32 H 0.17 2.57 7.73 -2.91 -0.02 2.55 16 33 H 0.18 1.99 7.63 -2.91 -0.02 1.97 16 34 H 0.44 0.82 9.11 -74.06 -0.67 0.15 16 35 H 0.20 1.96 6.41 -2.91 -0.02 1.94 16 Total: -1.00 -74.36 318.09 1.57 -72.78 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -0.13 Total: 4.81 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 4.27 Total: -1.26 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -4.14 Total: -85.16 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -0.46 Total: -36.13 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -74.36 1.57 -72.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739069965.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.364 kcal (2) G-P(sol) polarization free energy of solvation -74.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds