Wall clock time and date at job start Tue Mar 31 2020 00:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13589 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47167 * 73.19747 * 3 2 1 5 5 N 1.46900 * 109.46954 * 179.79924 * 4 3 2 6 6 C 1.46901 * 110.99789 * 298.41990 * 5 4 3 7 7 C 1.50703 * 109.46879 * 293.09262 * 6 5 4 8 8 H 1.08006 * 120.00168 * 354.95788 * 7 6 5 9 9 C 1.37881 * 119.99661 * 174.95984 * 7 6 5 10 10 N 1.31512 * 120.00393 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 119.99713 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46535 * 90.00219 * 11 9 7 13 13 H 1.48496 * 109.47038 * 210.00001 * 11 9 7 14 14 H 1.48499 * 109.47206 * 330.00475 * 11 9 7 15 15 C 1.46900 * 110.99986 * 62.37089 * 5 4 3 16 16 C 1.50699 * 109.46759 * 66.04640 * 15 5 4 17 17 C 1.40313 * 126.64998 * 260.27060 * 16 15 5 18 18 C 1.35164 * 107.12775 * 180.14956 * 17 16 15 19 19 O 1.33917 * 108.78289 * 359.61774 * 18 17 16 20 20 C 1.34939 * 109.37876 * 0.24506 * 19 18 17 21 21 C 1.46463 * 125.99493 * 179.97438 * 20 19 18 22 22 O 1.21626 * 120.00146 * 180.02562 * 21 20 19 23 23 O 1.34897 * 120.00041 * 0.02562 * 21 20 19 24 24 H 1.08995 * 109.47239 * 313.19867 * 3 2 1 25 25 H 1.08997 * 109.47027 * 193.19766 * 3 2 1 26 26 H 1.09003 * 109.46782 * 59.79611 * 4 3 2 27 27 H 1.08994 * 109.46909 * 299.79890 * 4 3 2 28 28 H 1.08994 * 109.47406 * 53.09021 * 6 5 4 29 29 H 1.09000 * 109.46959 * 173.09721 * 6 5 4 30 30 H 0.96992 * 120.00130 * 179.97438 * 10 9 7 31 31 H 1.08998 * 109.47497 * 306.04639 * 15 5 4 32 32 H 1.09000 * 109.46765 * 186.04232 * 15 5 4 33 33 H 1.07997 * 126.43628 * 0.02562 * 17 16 15 34 34 H 1.08002 * 125.61161 * 179.88559 * 18 17 16 35 35 H 0.96704 * 117.00104 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.4161 -1.3810 5 7 4.5872 -0.4108 -1.3823 6 6 5.1090 0.9348 -1.1082 7 6 4.7643 1.8503 -2.2545 8 1 4.2851 1.4535 -3.1374 9 6 5.0608 3.1946 -2.1763 10 7 5.6448 3.6778 -1.1016 11 14 4.6342 4.3294 -3.5976 12 1 3.2663 4.8736 -3.4029 13 1 5.6095 5.4480 -3.6477 14 1 4.6876 3.5685 -4.8717 15 6 5.1180 -1.3871 -0.4216 16 6 4.7641 -2.7803 -0.8739 17 6 3.7098 -3.5735 -0.3962 18 6 3.7567 -4.7450 -1.0687 19 8 4.7770 -4.7043 -1.9352 20 6 5.4046 -3.5141 -1.8322 21 6 6.5684 -3.0845 -2.6107 22 8 7.0495 -1.9825 -2.4276 23 8 7.1069 -3.9111 -3.5309 24 1 2.9716 -0.7026 0.7491 25 1 2.9708 1.0013 0.2346 26 1 2.7515 0.2852 -2.1306 27 1 2.7583 -1.4182 -1.6140 28 1 4.6625 1.3177 -0.1906 29 1 6.1919 0.8881 -0.9935 30 1 5.8537 4.6233 -1.0467 31 1 4.6840 -1.2028 0.5611 32 1 6.2020 -1.2880 -0.3644 33 1 2.9962 -3.3001 0.3669 34 1 3.0799 -5.5756 -0.9330 35 1 7.8739 -3.5833 -4.0201 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739072596.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:25 Heat of formation + Delta-G solvation = -35.721698 kcal Electronic energy + Delta-G solvation = -21565.340210 eV Core-core repulsion = 18144.913853 eV Total energy + Delta-G solvation = -3420.426356 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.72535 -39.64537 -37.94268 -36.12266 -35.80662 -33.49705 -32.46031 -30.75275 -29.91688 -27.60135 -25.54146 -24.08709 -23.22020 -21.67253 -20.49840 -19.41886 -18.19343 -17.50569 -17.16502 -16.49924 -16.26210 -15.77345 -15.23420 -14.93910 -14.61508 -14.35921 -13.75177 -13.67503 -13.49008 -13.07396 -12.89042 -12.80380 -12.13534 -11.99537 -11.87782 -11.51345 -11.44500 -11.26603 -11.11188 -10.75017 -10.60685 -10.48220 -10.22331 -9.89263 -9.75718 -9.26154 -8.67884 -8.44314 -7.34389 -6.04140 -4.04661 0.96541 2.28949 2.54534 3.06810 3.08079 3.10805 3.32243 3.38551 3.39155 3.43534 4.32498 4.43595 4.70016 4.75757 5.05864 5.26915 5.32260 5.42002 5.47769 5.51390 5.66516 5.75666 5.87584 6.06324 6.15586 6.28180 6.32692 6.56550 6.61580 6.88727 7.22176 7.24966 7.77198 7.86619 8.01883 8.04571 8.10137 8.47495 9.02597 9.59671 11.06286 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013895 B = 0.006439 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.569447 B = 4347.526360 C = 5820.876250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.225 3.775 3 C -0.075 4.075 4 C 0.070 3.930 5 N -0.513 5.513 6 C 0.190 3.810 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.058 3.942 10 N -0.898 5.898 11 Si 0.893 3.107 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.103 3.897 16 C -0.055 4.055 17 C -0.222 4.222 18 C -0.002 4.002 19 O -0.157 6.157 20 C -0.054 4.054 21 C 0.560 3.440 22 O -0.456 6.456 23 O -0.517 6.517 24 H 0.098 0.902 25 H 0.124 0.876 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.004 0.996 29 H 0.034 0.966 30 H 0.261 0.739 31 H 0.045 0.955 32 H 0.095 0.905 33 H 0.156 0.844 34 H 0.210 0.790 35 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.257 -16.275 1.624 16.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.092 4.092 3 C -0.117 4.117 4 C -0.060 4.060 5 N -0.236 5.236 6 C 0.065 3.935 7 C -0.544 4.544 8 H 0.081 0.919 9 C -0.144 4.144 10 N -0.537 5.537 11 Si 0.722 3.278 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.025 4.025 16 C -0.058 4.058 17 C -0.242 4.242 18 C -0.072 4.072 19 O -0.052 6.052 20 C -0.105 4.105 21 C 0.402 3.598 22 O -0.341 6.341 23 O -0.329 6.329 24 H 0.116 0.884 25 H 0.141 0.859 26 H 0.110 0.890 27 H 0.080 0.920 28 H 0.022 0.978 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.174 0.826 34 H 0.226 0.774 35 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -1.269 -16.267 1.281 16.367 hybrid contribution 0.285 1.216 -0.081 1.251 sum -0.984 -15.051 1.200 15.131 Atomic orbital electron populations 1.81134 1.13192 1.10038 1.09677 1.29289 0.95271 0.92243 0.92403 1.20264 0.81504 1.06489 1.03404 1.22102 0.89405 1.01074 0.93445 1.62378 1.04490 1.09165 1.47526 1.19855 0.95862 0.81560 0.96186 1.21112 1.39074 0.91797 1.02376 0.91883 1.24934 0.95350 0.98156 0.95921 1.69934 1.42189 1.13951 1.27649 0.86565 0.78005 0.80392 0.82888 1.20811 1.21294 1.19809 1.20723 1.01787 0.86152 0.93808 1.20711 0.93667 0.97167 0.94219 1.21769 1.01987 0.94697 1.05722 1.24359 0.91000 1.00422 0.91414 1.84126 1.36545 1.33989 1.50512 1.20446 0.99179 0.86588 1.04265 1.18807 0.81148 0.82117 0.77736 1.91133 1.58992 1.19536 1.64475 1.84624 1.48817 1.48843 1.50663 0.88370 0.85871 0.89022 0.91953 0.97821 0.94761 0.92924 0.93758 0.88719 0.82615 0.77395 0.72603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.26 18.54 42.15 0.78 -7.48 16 2 C 0.23 3.58 15.43 -20.76 -0.32 3.26 16 3 C -0.07 -1.10 5.05 -29.51 -0.15 -1.25 16 4 C 0.07 1.18 4.94 -3.82 -0.02 1.16 16 5 N -0.51 -9.82 4.69 -237.52 -1.11 -10.93 16 6 C 0.19 4.44 4.52 -4.97 -0.02 4.42 16 7 C -0.50 -13.33 8.40 -34.44 -0.29 -13.62 16 8 H 0.06 1.68 7.36 -52.48 -0.39 1.29 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -25.47 13.29 55.43 0.74 -24.74 16 11 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 15 C 0.10 1.65 4.40 -4.98 -0.02 1.63 16 16 C -0.06 -0.78 4.77 -104.42 -0.50 -1.28 16 17 C -0.22 -2.44 10.13 -39.90 -0.40 -2.84 16 18 C 0.00 -0.02 12.08 29.64 0.36 0.34 16 19 O -0.16 -2.00 10.67 4.72 0.05 -1.95 16 20 C -0.05 -0.80 7.18 -36.85 -0.26 -1.06 16 21 C 0.56 8.53 8.30 34.04 0.28 8.81 16 22 O -0.46 -8.37 15.78 -19.36 -0.31 -8.68 16 23 O -0.52 -6.12 13.44 -42.48 -0.57 -6.70 16 24 H 0.10 1.18 6.34 -51.93 -0.33 0.85 16 25 H 0.12 2.05 6.28 -51.93 -0.33 1.72 16 26 H 0.09 1.75 6.98 -51.93 -0.36 1.38 16 27 H 0.06 0.95 6.66 -51.93 -0.35 0.61 16 28 H 0.00 0.10 6.01 -51.93 -0.31 -0.21 16 29 H 0.03 0.89 7.91 -51.93 -0.41 0.48 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.04 0.62 6.08 -51.93 -0.32 0.30 16 32 H 0.09 1.66 6.79 -51.93 -0.35 1.31 16 33 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.21 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.42 2.94 9.11 45.56 0.42 3.35 16 LS Contribution 311.88 15.07 4.70 4.70 Total: -1.00 -32.90 311.88 -4.89 -37.80 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -2.71 Total: 0.69 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -1.45 Total: 1.04 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.40 Total: -43.15 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.83 Total: -17.32 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.90 -4.89 -37.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739072596.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.076 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds