Wall clock time and date at job start Tue Mar 31 2020 00:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13589 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47167 * 73.19747 * 3 2 1 5 5 N 1.46900 * 109.46954 * 179.79924 * 4 3 2 6 6 C 1.46901 * 110.99789 * 298.41990 * 5 4 3 7 7 C 1.50703 * 109.46879 * 293.09262 * 6 5 4 8 8 H 1.08006 * 120.00168 * 354.95788 * 7 6 5 9 9 C 1.37881 * 119.99661 * 174.95984 * 7 6 5 10 10 N 1.31512 * 120.00393 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 119.99713 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46535 * 90.00219 * 11 9 7 13 13 H 1.48496 * 109.47038 * 210.00001 * 11 9 7 14 14 H 1.48499 * 109.47206 * 330.00475 * 11 9 7 15 15 C 1.46900 * 110.99986 * 62.37089 * 5 4 3 16 16 C 1.50699 * 109.46759 * 66.04640 * 15 5 4 17 17 C 1.40313 * 126.64998 * 260.27060 * 16 15 5 18 18 C 1.35164 * 107.12775 * 180.14956 * 17 16 15 19 19 O 1.33917 * 108.78289 * 359.61774 * 18 17 16 20 20 C 1.34939 * 109.37876 * 0.24506 * 19 18 17 21 21 C 1.46463 * 125.99493 * 179.97438 * 20 19 18 22 22 O 1.21626 * 120.00146 * 180.02562 * 21 20 19 23 23 O 1.34897 * 120.00041 * 0.02562 * 21 20 19 24 24 H 1.08995 * 109.47239 * 313.19867 * 3 2 1 25 25 H 1.08997 * 109.47027 * 193.19766 * 3 2 1 26 26 H 1.09003 * 109.46782 * 59.79611 * 4 3 2 27 27 H 1.08994 * 109.46909 * 299.79890 * 4 3 2 28 28 H 1.08994 * 109.47406 * 53.09021 * 6 5 4 29 29 H 1.09000 * 109.46959 * 173.09721 * 6 5 4 30 30 H 0.96992 * 120.00130 * 179.97438 * 10 9 7 31 31 H 1.08998 * 109.47497 * 306.04639 * 15 5 4 32 32 H 1.09000 * 109.46765 * 186.04232 * 15 5 4 33 33 H 1.07997 * 126.43628 * 0.02562 * 17 16 15 34 34 H 1.08002 * 125.61161 * 179.88559 * 18 17 16 35 35 H 0.96704 * 117.00104 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.4161 -1.3810 5 7 4.5872 -0.4108 -1.3823 6 6 5.1090 0.9348 -1.1082 7 6 4.7643 1.8503 -2.2545 8 1 4.2851 1.4535 -3.1374 9 6 5.0608 3.1946 -2.1763 10 7 5.6448 3.6778 -1.1016 11 14 4.6342 4.3294 -3.5976 12 1 3.2663 4.8736 -3.4029 13 1 5.6095 5.4480 -3.6477 14 1 4.6876 3.5685 -4.8717 15 6 5.1180 -1.3871 -0.4216 16 6 4.7641 -2.7803 -0.8739 17 6 3.7098 -3.5735 -0.3962 18 6 3.7567 -4.7450 -1.0687 19 8 4.7770 -4.7043 -1.9352 20 6 5.4046 -3.5141 -1.8322 21 6 6.5684 -3.0845 -2.6107 22 8 7.0495 -1.9825 -2.4276 23 8 7.1069 -3.9111 -3.5309 24 1 2.9716 -0.7026 0.7491 25 1 2.9708 1.0013 0.2346 26 1 2.7515 0.2852 -2.1306 27 1 2.7583 -1.4182 -1.6140 28 1 4.6625 1.3177 -0.1906 29 1 6.1919 0.8881 -0.9935 30 1 5.8537 4.6233 -1.0467 31 1 4.6840 -1.2028 0.5611 32 1 6.2020 -1.2880 -0.3644 33 1 2.9962 -3.3001 0.3669 34 1 3.0799 -5.5756 -0.9330 35 1 7.8739 -3.5833 -4.0201 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739072596.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:25 Heat of formation + Delta-G solvation = -59.734961 kcal Electronic energy + Delta-G solvation = -21566.381503 eV Core-core repulsion = 18144.913853 eV Total energy + Delta-G solvation = -3421.467649 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.66706 -40.76862 -39.36681 -37.40180 -37.00104 -34.96176 -34.08594 -31.94343 -31.11224 -29.26021 -26.98349 -25.47007 -24.64030 -22.59295 -21.95715 -20.56597 -19.23815 -18.85215 -18.30366 -18.14559 -17.53624 -16.84355 -16.72238 -16.23098 -16.01045 -15.76956 -15.26371 -15.01226 -14.55513 -14.35160 -14.18219 -13.80612 -13.69942 -13.47161 -13.22368 -12.95134 -12.86488 -12.74587 -12.54992 -12.46349 -12.38712 -11.92138 -11.73164 -11.43065 -11.26127 -10.73884 -10.52005 -9.63593 -8.87186 -8.12547 -6.18959 -0.06229 1.42059 1.42387 1.44240 1.53941 1.60480 1.78572 1.82050 1.95826 2.44779 2.49200 3.02873 3.21191 3.53616 3.74293 3.94040 4.19608 4.25636 4.32341 4.51923 4.53264 4.60474 4.74720 4.90770 5.02804 5.06839 5.21985 5.40272 5.41830 5.44843 5.59709 5.74054 5.98681 6.16557 6.40080 6.60673 6.70303 6.96666 7.02129 7.49273 8.97098 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013895 B = 0.006439 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.569447 B = 4347.526360 C = 5820.876250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.247 3.753 3 C -0.061 4.061 4 C 0.075 3.925 5 N -0.525 5.525 6 C 0.207 3.793 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.010 3.990 10 N -0.928 5.928 11 Si 0.951 3.049 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.272 1.272 15 C 0.107 3.893 16 C -0.062 4.062 17 C -0.231 4.231 18 C 0.026 3.974 19 O -0.163 6.163 20 C -0.086 4.086 21 C 0.561 3.439 22 O -0.503 6.503 23 O -0.509 6.509 24 H 0.135 0.865 25 H 0.105 0.895 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.001 0.999 29 H -0.002 1.002 30 H 0.262 0.738 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.183 0.817 34 H 0.260 0.740 35 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.338 -18.241 1.859 18.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.070 4.070 3 C -0.103 4.103 4 C -0.055 4.055 5 N -0.248 5.248 6 C 0.082 3.918 7 C -0.552 4.552 8 H 0.074 0.926 9 C -0.189 4.189 10 N -0.569 5.569 11 Si 0.778 3.222 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.196 1.196 15 C -0.021 4.021 16 C -0.065 4.065 17 C -0.250 4.250 18 C -0.043 4.043 19 O -0.058 6.058 20 C -0.136 4.136 21 C 0.405 3.595 22 O -0.392 6.392 23 O -0.323 6.323 24 H 0.152 0.848 25 H 0.123 0.877 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.018 0.982 29 H 0.017 0.983 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.200 0.800 34 H 0.276 0.724 35 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -2.862 -18.271 1.493 18.553 hybrid contribution 0.781 1.677 -0.162 1.857 sum -2.081 -16.594 1.331 16.776 Atomic orbital electron populations 1.81164 1.14088 1.11108 1.10724 1.29277 0.95092 0.91242 0.91392 1.20148 0.80708 1.06370 1.03025 1.22000 0.87862 1.01647 0.93947 1.62151 1.05932 1.07411 1.49305 1.19436 0.93706 0.83673 0.95031 1.21418 1.38337 0.92518 1.02897 0.92631 1.25658 0.95447 0.99676 0.98083 1.70033 1.43379 1.14231 1.29283 0.85653 0.77917 0.78542 0.80132 1.20109 1.21057 1.19636 1.20622 1.00498 0.86665 0.94286 1.20679 0.94968 0.96247 0.94579 1.22051 1.01596 0.94600 1.06711 1.25393 0.89307 1.01028 0.88590 1.84138 1.37316 1.33017 1.51356 1.20392 1.00042 0.87823 1.05382 1.19040 0.81150 0.81651 0.77640 1.91114 1.60598 1.21431 1.66084 1.84587 1.49617 1.48104 1.50028 0.84768 0.87688 0.91703 0.89689 0.98176 0.98341 0.92904 0.91286 0.91160 0.80001 0.72410 0.70470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.72 18.54 20.01 0.37 -16.35 16 2 C 0.25 7.34 15.43 89.45 1.38 8.72 16 3 C -0.06 -1.68 5.05 28.79 0.15 -1.53 16 4 C 0.08 2.46 4.94 86.31 0.43 2.89 16 5 N -0.53 -20.24 4.69 -905.36 -4.24 -24.48 16 6 C 0.21 10.01 4.52 85.56 0.39 10.40 16 7 C -0.51 -27.74 8.40 25.60 0.22 -27.52 16 8 H 0.06 3.03 7.36 -2.91 -0.02 3.00 16 9 C 0.01 0.53 5.46 84.66 0.46 0.99 16 10 N -0.93 -53.73 13.29 21.45 0.28 -53.45 16 11 Si 0.95 44.08 29.54 68.60 2.03 46.11 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 13 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 14 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 15 C 0.11 3.37 4.40 85.56 0.38 3.75 16 16 C -0.06 -1.65 4.77 -19.73 -0.09 -1.74 16 17 C -0.23 -4.12 10.13 22.07 0.22 -3.90 16 18 C 0.03 0.38 12.08 67.11 0.81 1.19 16 19 O -0.16 -3.72 10.67 -4.94 -0.05 -3.77 16 20 C -0.09 -2.44 7.18 24.04 0.17 -2.27 16 21 C 0.56 17.32 8.30 69.96 0.58 17.90 16 22 O -0.50 -19.36 15.78 19.42 0.31 -19.06 16 23 O -0.51 -11.87 13.44 -56.73 -0.76 -12.64 16 24 H 0.13 2.75 6.34 -2.39 -0.02 2.74 16 25 H 0.11 3.42 6.28 -2.39 -0.02 3.41 16 26 H 0.06 2.47 6.98 -2.39 -0.02 2.45 16 27 H 0.08 2.40 6.66 -2.39 -0.02 2.38 16 28 H 0.00 0.03 6.01 -2.39 -0.01 0.02 16 29 H 0.00 -0.08 7.91 -2.39 -0.02 -0.10 16 30 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.07 1.79 6.08 -2.39 -0.01 1.78 16 32 H 0.07 2.57 6.79 -2.39 -0.02 2.56 16 33 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.26 0.91 8.06 -2.91 -0.02 0.88 16 35 H 0.43 6.03 9.11 -74.05 -0.67 5.35 16 Total: -1.00 -73.57 311.88 3.50 -70.08 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: 0.48 Total: 4.68 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 5.09 Total: 8.88 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -3.59 Total: -94.28 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.51 Total: -35.47 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -73.57 3.50 -70.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739072596.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.343 kcal (2) G-P(sol) polarization free energy of solvation -73.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds