Wall clock time and date at job start Tue Mar 31 2020 00:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47268 * 315.28459 * 3 2 1 5 5 N 1.46904 * 109.47243 * 179.56550 * 4 3 2 6 6 C 1.46904 * 110.99761 * 288.05422 * 5 4 3 7 7 C 1.50697 * 109.46895 * 160.35495 * 6 5 4 8 8 H 1.08010 * 120.00029 * 4.65689 * 7 6 5 9 9 C 1.37878 * 120.00304 * 184.65470 * 7 6 5 10 10 N 1.31515 * 119.99665 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00176 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47360 * 60.00273 * 11 9 7 13 13 H 1.48505 * 109.46917 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46909 * 299.99670 * 11 9 7 15 15 C 1.46901 * 110.99833 * 164.10082 * 5 4 3 16 16 C 1.50697 * 109.47018 * 293.95198 * 15 5 4 17 17 C 1.34161 * 125.42815 * 90.00565 * 16 15 5 18 18 C 1.47058 * 105.94882 * 180.02562 * 17 16 15 19 19 C 1.47231 * 127.19981 * 179.97438 * 18 17 16 20 20 O 1.21540 * 119.99946 * 0.02562 * 19 18 17 21 21 O 1.34766 * 120.00250 * 179.97438 * 19 18 17 22 22 C 1.36494 * 105.59587 * 359.97438 * 18 17 16 23 23 O 1.33624 * 108.38946 * 0.02562 * 22 18 17 24 24 H 1.09004 * 109.47048 * 195.28068 * 3 2 1 25 25 H 1.09003 * 109.47162 * 75.28491 * 3 2 1 26 26 H 1.08999 * 109.47154 * 59.56267 * 4 3 2 27 27 H 1.09000 * 109.47146 * 299.56553 * 4 3 2 28 28 H 1.08991 * 109.47170 * 280.35406 * 6 5 4 29 29 H 1.09000 * 109.46878 * 40.36133 * 6 5 4 30 30 H 0.96993 * 120.00150 * 180.02562 * 10 9 7 31 31 H 1.09005 * 109.46360 * 173.95445 * 15 5 4 32 32 H 1.09002 * 109.47090 * 53.95852 * 15 5 4 33 33 H 1.08000 * 127.01944 * 359.75452 * 17 16 15 34 34 H 0.96694 * 117.00244 * 179.97438 * 21 19 18 35 35 H 1.08004 * 125.80373 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.0241 1.0149 5 7 4.5875 -1.0309 1.0074 6 6 5.1049 -1.6518 -0.2193 7 6 6.5350 -1.2272 -0.4326 8 1 7.0358 -0.6241 0.3104 9 6 7.2042 -1.6087 -1.5761 10 7 6.5942 -2.3427 -2.4810 11 14 8.9771 -1.0830 -1.8400 12 1 9.8197 -1.6125 -0.7379 13 1 9.4642 -1.6180 -3.1369 14 1 9.0566 0.3998 -1.8556 15 6 5.1169 -1.7032 2.2015 16 6 4.7683 -0.8986 3.4270 17 6 3.6537 -1.0413 4.1599 18 6 3.7520 -0.0504 5.2421 19 6 2.7755 0.1942 6.3165 20 8 1.7545 -0.4629 6.3708 21 8 3.0143 1.1459 7.2403 22 6 4.9379 0.5951 5.0420 23 8 5.5234 0.0751 3.9592 24 1 2.9709 0.9922 0.2708 25 1 2.9715 -0.2602 -0.9940 26 1 2.7492 -2.0144 0.7484 27 1 2.7614 -0.7589 2.0100 28 1 5.0581 -2.7366 -0.1250 29 1 4.5011 -1.3345 -1.0696 30 1 7.0651 -2.6114 -3.2853 31 1 6.2004 -1.7894 2.1194 32 1 4.6784 -2.6978 2.2828 33 1 2.8469 -1.7383 3.9875 34 1 2.3439 1.2702 7.9260 35 1 5.3350 1.3913 5.6542 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739073200.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:57 Heat of formation + Delta-G solvation = -45.562393 kcal Electronic energy + Delta-G solvation = -20784.212973 eV Core-core repulsion = 17363.359892 eV Total energy + Delta-G solvation = -3420.853081 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.58886 -39.94474 -37.65532 -36.18296 -36.12786 -33.04138 -32.70549 -31.77134 -30.11373 -27.10067 -25.45064 -24.59166 -23.19966 -21.13620 -20.86587 -20.04019 -17.87459 -17.60203 -17.16370 -16.64687 -16.25522 -15.91027 -15.46789 -15.09396 -14.73685 -14.41521 -14.16930 -13.76662 -13.55878 -13.11167 -12.87073 -12.72820 -12.45604 -12.15682 -12.12718 -11.76807 -11.52686 -11.25904 -11.05098 -10.92856 -10.83341 -10.74510 -10.44157 -9.93619 -9.84690 -9.42272 -8.63914 -8.52232 -7.60491 -6.12877 -4.15148 1.10439 1.99746 2.73308 2.95871 2.99934 3.02623 3.02722 3.28711 3.34007 3.36282 4.14106 4.37627 4.55335 4.65472 4.94053 5.17351 5.23866 5.31754 5.42340 5.50679 5.58321 5.78762 5.80760 5.87951 6.06454 6.14632 6.23388 6.28227 6.36922 6.88580 7.08798 7.11904 7.63929 7.76741 7.76898 7.82911 7.97011 8.31774 8.91966 9.50194 10.97340 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015436 B = 0.004807 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.461202 B = 5822.973446 C = 7245.411487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.219 3.781 3 C -0.025 4.025 4 C 0.051 3.949 5 N -0.529 5.529 6 C 0.189 3.811 7 C -0.512 4.512 8 H 0.065 0.935 9 C 0.059 3.941 10 N -0.897 5.897 11 Si 0.898 3.102 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.133 3.867 16 C 0.029 3.971 17 C -0.172 4.172 18 C -0.237 4.237 19 C 0.556 3.444 20 O -0.516 6.516 21 O -0.517 6.517 22 C 0.053 3.947 23 O -0.155 6.155 24 H 0.114 0.886 25 H 0.118 0.882 26 H 0.038 0.962 27 H 0.073 0.927 28 H -0.003 1.003 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.109 0.891 32 H 0.064 0.936 33 H 0.158 0.842 34 H 0.414 0.586 35 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.235 5.117 14.266 15.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.099 4.099 3 C -0.066 4.066 4 C -0.079 4.079 5 N -0.254 5.254 6 C 0.065 3.935 7 C -0.550 4.550 8 H 0.083 0.917 9 C -0.143 4.143 10 N -0.536 5.536 11 Si 0.725 3.275 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.201 1.201 15 C 0.005 3.995 16 C -0.020 4.020 17 C -0.192 4.192 18 C -0.240 4.240 19 C 0.402 3.598 20 O -0.406 6.406 21 O -0.330 6.330 22 C -0.018 4.018 23 O -0.048 6.048 24 H 0.132 0.868 25 H 0.136 0.864 26 H 0.056 0.944 27 H 0.092 0.908 28 H 0.014 0.986 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.127 0.873 32 H 0.082 0.918 33 H 0.175 0.825 34 H 0.272 0.728 35 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -3.439 5.342 13.633 15.041 hybrid contribution 0.440 -0.454 0.340 0.717 sum -2.999 4.888 13.973 15.104 Atomic orbital electron populations 1.81162 1.13232 1.09496 1.09603 1.29430 0.95459 0.92518 0.92469 1.19340 0.80114 1.03382 1.03742 1.22040 0.90471 0.96883 0.98533 1.62066 1.04198 1.55927 1.03217 1.19900 0.96175 0.92499 0.84892 1.21088 0.96359 1.32727 1.04830 0.91666 1.24957 0.98416 0.95105 0.95843 1.69924 1.37255 1.36706 1.09744 0.86566 0.84562 0.79039 0.77291 1.20251 1.21440 1.20116 1.20559 1.03505 0.91674 0.83729 1.22663 0.90715 0.91267 0.97390 1.22401 0.99787 1.01972 0.95055 1.20377 0.97621 1.05665 1.00300 1.19792 0.84174 0.76189 0.79688 1.90905 1.27692 1.47752 1.74214 1.84549 1.53271 1.54982 1.40163 1.24639 0.91932 0.97426 0.87825 1.83866 1.44822 1.41467 1.34683 0.86770 0.86415 0.94383 0.90829 0.98553 0.93904 0.92716 0.87330 0.91845 0.82452 0.72787 0.76674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.91 18.54 42.15 0.78 -7.13 16 2 C 0.22 3.29 15.43 -20.76 -0.32 2.97 16 3 C -0.03 -0.35 5.77 -29.52 -0.17 -0.52 16 4 C 0.05 0.75 4.78 -3.82 -0.02 0.73 16 5 N -0.53 -9.24 4.37 -237.52 -1.04 -10.28 16 6 C 0.19 4.13 4.59 -4.98 -0.02 4.10 16 7 C -0.51 -12.62 8.61 -34.44 -0.30 -12.92 16 8 H 0.07 1.60 7.66 -52.48 -0.40 1.20 16 9 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 10 N -0.90 -24.42 13.29 55.43 0.74 -23.69 16 11 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 15 C 0.13 2.09 5.31 -4.98 -0.03 2.06 16 16 C 0.03 0.42 6.25 -35.75 -0.22 0.19 16 17 C -0.17 -2.35 9.19 -37.44 -0.34 -2.70 16 18 C -0.24 -3.01 6.31 -103.30 -0.65 -3.66 16 19 C 0.56 6.91 8.33 34.38 0.29 7.19 16 20 O -0.52 -8.05 17.77 -19.30 -0.34 -8.40 16 21 O -0.52 -4.38 13.28 -40.67 -0.54 -4.92 16 22 C 0.05 0.58 11.94 30.10 0.36 0.94 16 23 O -0.15 -2.12 10.52 7.71 0.08 -2.04 16 24 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 25 H 0.12 1.69 6.52 -51.93 -0.34 1.35 16 26 H 0.04 0.57 8.05 -51.93 -0.42 0.15 16 27 H 0.07 1.03 5.48 -51.93 -0.28 0.75 16 28 H 0.00 -0.08 8.00 -51.93 -0.42 -0.49 16 29 H 0.04 0.98 6.24 -51.93 -0.32 0.65 16 30 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.11 1.84 7.32 -51.93 -0.38 1.46 16 32 H 0.06 0.92 8.12 -51.93 -0.42 0.49 16 33 H 0.16 2.08 7.94 -52.49 -0.42 1.67 16 34 H 0.41 1.65 9.11 45.56 0.42 2.06 16 35 H 0.22 1.46 8.06 -52.48 -0.42 1.03 16 LS Contribution 319.55 15.07 4.82 4.82 Total: -1.00 -31.38 319.55 -5.02 -36.40 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -2.97 Total: 0.38 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -1.53 Total: -0.19 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.48 Total: -41.09 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.80 Total: -15.35 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.38 -5.02 -36.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739073200.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.161 kcal (2) G-P(sol) polarization free energy of solvation -31.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds