Wall clock time and date at job start Tue Mar 31 2020 00:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47268 * 315.28459 * 3 2 1 5 5 N 1.46904 * 109.47243 * 179.56550 * 4 3 2 6 6 C 1.46904 * 110.99761 * 288.05422 * 5 4 3 7 7 C 1.50697 * 109.46895 * 160.35495 * 6 5 4 8 8 H 1.08010 * 120.00029 * 4.65689 * 7 6 5 9 9 C 1.37878 * 120.00304 * 184.65470 * 7 6 5 10 10 N 1.31515 * 119.99665 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00176 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47360 * 60.00273 * 11 9 7 13 13 H 1.48505 * 109.46917 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46909 * 299.99670 * 11 9 7 15 15 C 1.46901 * 110.99833 * 164.10082 * 5 4 3 16 16 C 1.50697 * 109.47018 * 293.95198 * 15 5 4 17 17 C 1.34161 * 125.42815 * 90.00565 * 16 15 5 18 18 C 1.47058 * 105.94882 * 180.02562 * 17 16 15 19 19 C 1.47231 * 127.19981 * 179.97438 * 18 17 16 20 20 O 1.21540 * 119.99946 * 0.02562 * 19 18 17 21 21 O 1.34766 * 120.00250 * 179.97438 * 19 18 17 22 22 C 1.36494 * 105.59587 * 359.97438 * 18 17 16 23 23 O 1.33624 * 108.38946 * 0.02562 * 22 18 17 24 24 H 1.09004 * 109.47048 * 195.28068 * 3 2 1 25 25 H 1.09003 * 109.47162 * 75.28491 * 3 2 1 26 26 H 1.08999 * 109.47154 * 59.56267 * 4 3 2 27 27 H 1.09000 * 109.47146 * 299.56553 * 4 3 2 28 28 H 1.08991 * 109.47170 * 280.35406 * 6 5 4 29 29 H 1.09000 * 109.46878 * 40.36133 * 6 5 4 30 30 H 0.96993 * 120.00150 * 180.02562 * 10 9 7 31 31 H 1.09005 * 109.46360 * 173.95445 * 15 5 4 32 32 H 1.09002 * 109.47090 * 53.95852 * 15 5 4 33 33 H 1.08000 * 127.01944 * 359.75452 * 17 16 15 34 34 H 0.96694 * 117.00244 * 179.97438 * 21 19 18 35 35 H 1.08004 * 125.80373 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.0241 1.0149 5 7 4.5875 -1.0309 1.0074 6 6 5.1049 -1.6518 -0.2193 7 6 6.5350 -1.2272 -0.4326 8 1 7.0358 -0.6241 0.3104 9 6 7.2042 -1.6087 -1.5761 10 7 6.5942 -2.3427 -2.4810 11 14 8.9771 -1.0830 -1.8400 12 1 9.8197 -1.6125 -0.7379 13 1 9.4642 -1.6180 -3.1369 14 1 9.0566 0.3998 -1.8556 15 6 5.1169 -1.7032 2.2015 16 6 4.7683 -0.8986 3.4270 17 6 3.6537 -1.0413 4.1599 18 6 3.7520 -0.0504 5.2421 19 6 2.7755 0.1942 6.3165 20 8 1.7545 -0.4629 6.3708 21 8 3.0143 1.1459 7.2403 22 6 4.9379 0.5951 5.0420 23 8 5.5234 0.0751 3.9592 24 1 2.9709 0.9922 0.2708 25 1 2.9715 -0.2602 -0.9940 26 1 2.7492 -2.0144 0.7484 27 1 2.7614 -0.7589 2.0100 28 1 5.0581 -2.7366 -0.1250 29 1 4.5011 -1.3345 -1.0696 30 1 7.0651 -2.6114 -3.2853 31 1 6.2004 -1.7894 2.1194 32 1 4.6784 -2.6978 2.2828 33 1 2.8469 -1.7383 3.9875 34 1 2.3439 1.2702 7.9260 35 1 5.3350 1.3913 5.6542 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739073200.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:56 Heat of formation + Delta-G solvation = -66.959466 kcal Electronic energy + Delta-G solvation = -20785.140819 eV Core-core repulsion = 17363.359892 eV Total energy + Delta-G solvation = -3421.780927 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.60087 -40.84645 -39.01452 -37.46261 -37.02861 -34.72611 -33.92903 -32.94082 -31.44000 -28.73133 -26.67934 -25.54935 -24.83075 -22.22340 -22.10800 -21.11249 -18.81261 -18.70110 -18.43729 -18.23203 -17.36272 -16.90121 -16.69442 -16.34292 -16.07872 -15.83733 -15.48453 -15.07788 -14.69249 -14.29059 -14.06331 -14.00257 -13.73765 -13.64204 -13.38779 -13.16726 -12.71771 -12.61170 -12.54027 -12.44652 -12.26378 -12.03541 -11.82747 -11.50112 -11.25653 -10.86950 -10.47634 -9.67324 -9.06248 -8.08768 -6.15981 0.20211 0.92069 1.52244 1.53121 1.60244 1.72433 1.79190 1.83394 2.05986 2.14240 2.50147 2.90893 3.25482 3.51584 3.68292 3.79329 4.10258 4.13831 4.25564 4.34993 4.59014 4.63199 4.72534 4.80480 4.94277 5.04333 5.07170 5.22525 5.31725 5.34561 5.56884 5.77276 6.05392 6.16205 6.28963 6.55145 6.60882 6.98800 6.99832 7.53118 9.00865 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015436 B = 0.004807 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.461202 B = 5822.973446 C = 7245.411487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C 0.243 3.757 3 C -0.016 4.016 4 C 0.053 3.947 5 N -0.530 5.530 6 C 0.202 3.798 7 C -0.514 4.514 8 H 0.065 0.935 9 C 0.009 3.991 10 N -0.932 5.932 11 Si 0.956 3.044 12 H -0.271 1.271 13 H -0.292 1.292 14 H -0.270 1.270 15 C 0.135 3.865 16 C 0.016 3.984 17 C -0.171 4.171 18 C -0.263 4.263 19 C 0.565 3.435 20 O -0.557 6.557 21 O -0.501 6.501 22 C 0.085 3.915 23 O -0.168 6.168 24 H 0.133 0.867 25 H 0.113 0.887 26 H 0.036 0.964 27 H 0.086 0.914 28 H -0.026 1.026 29 H 0.032 0.968 30 H 0.262 0.738 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.156 0.844 34 H 0.435 0.565 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.453 6.733 15.900 17.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.074 4.074 3 C -0.056 4.056 4 C -0.076 4.076 5 N -0.255 5.255 6 C 0.076 3.924 7 C -0.553 4.553 8 H 0.083 0.917 9 C -0.189 4.189 10 N -0.573 5.573 11 Si 0.782 3.218 12 H -0.196 1.196 13 H -0.218 1.218 14 H -0.195 1.195 15 C 0.008 3.992 16 C -0.033 4.033 17 C -0.191 4.191 18 C -0.266 4.266 19 C 0.411 3.589 20 O -0.450 6.450 21 O -0.315 6.315 22 C 0.014 3.986 23 O -0.062 6.062 24 H 0.151 0.849 25 H 0.131 0.869 26 H 0.054 0.946 27 H 0.104 0.896 28 H -0.008 1.008 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.174 0.826 34 H 0.297 0.703 35 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -2.656 6.985 15.312 17.038 hybrid contribution 0.202 -0.898 -0.032 0.920 sum -2.454 6.087 15.280 16.630 Atomic orbital electron populations 1.81189 1.14330 1.10850 1.10865 1.29487 0.95335 0.91291 0.91278 1.19318 0.79131 1.04017 1.03165 1.22049 0.88812 0.97219 0.99526 1.61931 1.05701 1.55530 1.02318 1.19570 0.95045 0.91172 0.86577 1.21429 0.97694 1.31772 1.04389 0.91712 1.25693 1.02010 0.95337 0.95874 1.70038 1.38703 1.38286 1.10275 0.85637 0.80390 0.78782 0.76999 1.19576 1.21772 1.19514 1.20432 1.02458 0.92516 0.83800 1.22184 0.91341 0.92346 0.97474 1.22470 0.99310 1.01983 0.95315 1.20493 0.98865 1.06373 1.00831 1.19706 0.83267 0.76051 0.79838 1.90896 1.29293 1.49494 1.75355 1.84489 1.53899 1.53173 1.39969 1.25459 0.90548 0.96399 0.86152 1.83863 1.45189 1.41494 1.35676 0.84911 0.86865 0.94566 0.89612 1.00798 0.95030 0.92960 0.88968 0.91021 0.82629 0.70314 0.72339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.79 18.54 20.01 0.37 -16.42 16 2 C 0.24 7.07 15.43 89.44 1.38 8.45 16 3 C -0.02 -0.42 5.77 28.79 0.17 -0.26 16 4 C 0.05 1.55 4.78 86.30 0.41 1.96 16 5 N -0.53 -18.31 4.37 -905.36 -3.96 -22.27 16 6 C 0.20 8.89 4.59 85.56 0.39 9.28 16 7 C -0.51 -25.39 8.61 25.60 0.22 -25.17 16 8 H 0.06 3.15 7.66 -2.91 -0.02 3.12 16 9 C 0.01 0.47 5.46 84.65 0.46 0.93 16 10 N -0.93 -51.40 13.29 21.45 0.28 -51.11 16 11 Si 0.96 40.92 29.54 68.60 2.03 42.95 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 13 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 14 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 15 C 0.14 4.22 5.31 85.56 0.45 4.67 16 16 C 0.02 0.42 6.25 24.75 0.15 0.58 16 17 C -0.17 -4.46 9.19 23.65 0.22 -4.24 16 18 C -0.26 -6.07 6.31 -19.01 -0.12 -6.19 16 19 C 0.56 12.80 8.33 70.19 0.58 13.38 16 20 O -0.56 -16.82 17.77 19.71 0.35 -16.47 16 21 O -0.50 -6.81 13.28 -56.77 -0.75 -7.56 16 22 C 0.09 1.57 11.94 67.41 0.80 2.37 16 23 O -0.17 -4.23 10.52 4.67 0.05 -4.18 16 24 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 25 H 0.11 3.19 6.52 -2.39 -0.02 3.17 16 26 H 0.04 1.07 8.05 -2.39 -0.02 1.05 16 27 H 0.09 2.31 5.48 -2.39 -0.01 2.29 16 28 H -0.03 -1.24 8.00 -2.39 -0.02 -1.26 16 29 H 0.03 1.46 6.24 -2.39 -0.01 1.45 16 30 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 31 H 0.09 3.15 7.32 -2.38 -0.02 3.13 16 32 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 33 H 0.16 4.04 7.94 -2.91 -0.02 4.01 16 34 H 0.43 2.06 9.11 -74.06 -0.67 1.39 16 35 H 0.26 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -67.43 319.55 3.97 -63.46 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 0.47 Total: 5.84 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 5.13 Total: 5.76 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -3.30 Total: -89.80 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.35 Total: -28.21 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Total: -67.43 3.97 -63.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739073200.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.498 kcal (2) G-P(sol) polarization free energy of solvation -67.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds