Wall clock time and date at job start Mon Mar 30 2020 23:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31432 * 1 3 3 Si 1.86798 * 120.00104 * 2 1 4 4 H 1.48494 * 109.47349 * 240.00037 * 3 2 1 5 5 H 1.48497 * 109.47040 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47042 * 119.99808 * 3 2 1 7 7 C 1.38888 * 119.99505 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99564 * 189.24865 * 7 2 1 9 9 N 1.37137 * 120.00163 * 9.24700 * 7 2 1 10 10 C 1.34779 * 119.99968 * 235.66457 * 9 7 2 11 11 O 1.21280 * 120.00170 * 185.67611 * 10 9 7 12 12 C 1.50706 * 119.99925 * 5.68127 * 10 9 7 13 13 C 1.52998 * 109.47064 * 174.83593 * 12 10 9 14 14 N 1.46500 * 109.47261 * 180.02562 * 13 12 10 15 15 C 1.34767 * 120.00067 * 179.97438 * 14 13 12 16 16 O 1.21510 * 120.00274 * 359.97438 * 15 14 13 17 17 O 1.34640 * 119.99891 * 179.97438 * 15 14 13 18 18 C 1.39785 * 120.00264 * 55.67404 * 9 7 2 19 19 C 1.38962 * 120.07702 * 355.17985 * 18 9 7 20 20 C 1.38078 * 119.92712 * 179.97438 * 19 18 9 21 21 C 1.38316 * 120.07440 * 0.02562 * 20 19 18 22 22 C 1.38314 * 120.15564 * 359.97438 * 21 20 19 23 23 C 1.38083 * 120.07414 * 0.02562 * 22 21 20 24 24 H 0.97001 * 119.99540 * 4.98959 * 1 2 3 25 25 H 1.09000 * 109.46964 * 294.83919 * 12 10 9 26 26 H 1.09006 * 109.47127 * 54.83825 * 12 10 9 27 27 H 1.09007 * 109.46868 * 299.99828 * 13 12 10 28 28 H 1.08998 * 109.47145 * 59.99834 * 13 12 10 29 29 H 0.97008 * 119.99731 * 359.97438 * 14 13 12 30 30 H 0.96698 * 117.00280 * 180.02562 * 17 15 14 31 31 H 1.08007 * 120.03591 * 359.71455 * 19 18 9 32 32 H 1.07997 * 119.96713 * 179.97438 * 20 19 18 33 33 H 1.07994 * 119.92157 * 179.97438 * 21 20 19 34 34 H 1.07995 * 119.95926 * 180.02562 * 22 21 20 35 35 H 1.08009 * 120.03564 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1021 1.6964 -1.2124 5 1 1.2834 2.7464 0.0006 6 1 3.1021 1.6964 1.2126 7 6 2.0087 -1.2029 -0.0005 8 1 3.0782 -1.2090 0.1498 9 7 1.3363 -2.3827 -0.1919 10 6 1.4382 -3.3716 0.7181 11 8 0.9286 -4.4505 0.5008 12 6 2.1852 -3.1368 2.0057 13 6 2.0425 -4.3633 2.9091 14 7 2.7681 -4.1348 4.1611 15 6 2.7816 -5.0862 5.1155 16 8 2.1915 -6.1335 4.9378 17 8 3.4489 -4.8764 6.2659 18 6 0.5454 -2.5597 -1.3308 19 6 0.3586 -1.5077 -2.2193 20 6 -0.4228 -1.6861 -3.3437 21 6 -1.0198 -2.9101 -3.5858 22 6 -0.8361 -3.9594 -2.7036 23 6 -0.0559 -3.7879 -1.5772 24 1 -0.4849 0.8369 -0.0731 25 1 3.2395 -2.9664 1.7882 26 1 1.7726 -2.2634 2.5110 27 1 0.9880 -4.5336 3.1266 28 1 2.4549 -5.2366 2.4039 29 1 3.2389 -3.2986 4.3031 30 1 3.4302 -5.5880 6.9203 31 1 0.8207 -0.5503 -2.0285 32 1 -0.5688 -0.8688 -4.0344 33 1 -1.6308 -3.0468 -4.4657 34 1 -1.3033 -4.9138 -2.8959 35 1 0.0868 -4.6076 -0.8885 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739076510.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:06 Heat of formation + Delta-G solvation = -76.883011 kcal Electronic energy + Delta-G solvation = -21301.878585 eV Core-core repulsion = 17879.667340 eV Total energy + Delta-G solvation = -3422.211245 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.19488 -39.75095 -37.42978 -36.24848 -35.16702 -34.93696 -32.04927 -30.86328 -29.64099 -28.54440 -25.34236 -24.20804 -21.86553 -21.38482 -21.02027 -19.62416 -18.73923 -17.67942 -17.16067 -16.32869 -16.11103 -15.62587 -15.22644 -14.81374 -14.76085 -14.24792 -13.57035 -13.42833 -13.37374 -13.05440 -12.73726 -12.26545 -12.03217 -11.73109 -11.51816 -11.42993 -11.29031 -11.12632 -10.96732 -10.88826 -10.62101 -10.57096 -10.09137 -9.30569 -9.10262 -8.81037 -8.23227 -7.82787 -6.95077 -6.38625 -4.64161 2.37028 2.46211 2.53479 2.89755 2.97809 3.06717 3.07632 3.64284 3.88763 4.39709 4.65944 4.75012 5.07881 5.26080 5.51086 5.67997 5.85145 5.93905 6.06856 6.13597 6.21788 6.30434 6.47741 6.63366 6.67451 6.70457 6.87668 7.10827 7.16472 7.46126 7.47865 7.58529 7.64451 7.72414 7.99195 8.37425 8.45208 8.75871 9.14484 9.52939 10.39214 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016164 B = 0.005505 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.841480 B = 5084.697889 C = 6635.457972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.057 3.943 3 Si 0.914 3.086 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.373 4.373 8 H 0.094 0.906 9 N -0.381 5.381 10 C 0.498 3.502 11 O -0.565 6.565 12 C -0.130 4.130 13 C 0.149 3.851 14 N -0.704 5.704 15 C 0.660 3.340 16 O -0.580 6.580 17 O -0.532 6.532 18 C 0.182 3.818 19 C -0.105 4.105 20 C -0.124 4.124 21 C -0.172 4.172 22 C -0.121 4.121 23 C -0.192 4.192 24 H 0.276 0.724 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.407 0.593 30 H 0.426 0.574 31 H 0.131 0.869 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.991 -1.124 4.328 6.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.153 4.153 3 Si 0.739 3.261 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.500 4.500 8 H 0.111 0.889 9 N -0.088 5.088 10 C 0.290 3.710 11 O -0.449 6.449 12 C -0.170 4.170 13 C 0.027 3.973 14 N -0.364 5.364 15 C 0.411 3.589 16 O -0.469 6.469 17 O -0.342 6.342 18 C 0.086 3.914 19 C -0.126 4.126 20 C -0.143 4.143 21 C -0.192 4.192 22 C -0.140 4.140 23 C -0.211 4.211 24 H 0.087 0.913 25 H 0.112 0.888 26 H 0.121 0.879 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.242 0.758 30 H 0.285 0.715 31 H 0.149 0.851 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 4.343 -1.687 4.040 6.166 hybrid contribution 0.408 1.200 0.350 1.315 sum 4.751 -0.486 4.390 6.487 Atomic orbital electron populations 1.70026 1.06130 1.28943 1.42000 1.25629 0.95289 1.00213 0.94204 0.86202 0.79474 0.80810 0.79596 1.19302 1.20544 1.19222 1.19284 0.92268 0.82509 1.55916 0.88867 1.40930 1.39611 1.13672 1.14613 1.20504 0.81483 0.84254 0.84786 1.90222 1.50329 1.26465 1.77906 1.21479 1.02457 0.98538 0.94502 1.21192 0.97001 0.98405 0.80681 1.44703 1.56381 1.18826 1.16510 1.17778 0.77897 0.83253 0.79957 1.91066 1.48580 1.26724 1.80576 1.84178 1.71099 1.51123 1.27767 1.18270 0.93069 0.93122 0.86955 1.21028 0.99656 0.98843 0.93060 1.20778 0.99282 0.96636 0.97652 1.20806 1.03643 0.94393 1.00311 1.20883 0.99723 0.97880 0.95467 1.22809 0.99419 0.99322 0.99546 0.91326 0.88773 0.87852 0.90479 0.90353 0.75816 0.71502 0.85112 0.87766 0.88159 0.87666 0.80767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.86 11.39 55.49 0.63 -20.23 16 2 C 0.06 1.31 3.49 -17.48 -0.06 1.24 16 3 Si 0.91 17.60 29.57 -169.99 -5.03 12.58 16 4 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 7 C -0.37 -8.56 7.61 -14.94 -0.11 -8.67 16 8 H 0.09 1.99 7.85 -52.48 -0.41 1.58 16 9 N -0.38 -9.06 2.62 -58.98 -0.15 -9.21 16 10 C 0.50 10.94 7.57 -10.98 -0.08 10.86 16 11 O -0.56 -13.23 12.37 5.56 0.07 -13.16 16 12 C -0.13 -2.19 4.64 -27.88 -0.13 -2.31 16 13 C 0.15 2.39 4.98 -4.04 -0.02 2.37 16 14 N -0.70 -9.39 5.56 -65.28 -0.36 -9.75 16 15 C 0.66 9.40 9.12 54.05 0.49 9.89 16 16 O -0.58 -10.49 17.13 -19.28 -0.33 -10.82 16 17 O -0.53 -5.47 13.48 -40.32 -0.54 -6.01 16 18 C 0.18 4.46 6.05 -83.70 -0.51 3.95 16 19 C -0.11 -2.46 7.87 -39.37 -0.31 -2.77 16 20 C -0.12 -2.58 10.04 -39.61 -0.40 -2.98 16 21 C -0.17 -3.39 10.04 -39.52 -0.40 -3.78 16 22 C -0.12 -2.49 10.04 -39.61 -0.40 -2.89 16 23 C -0.19 -4.47 9.06 -39.37 -0.36 -4.83 16 24 H 0.28 6.54 8.32 -40.82 -0.34 6.20 16 25 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.10 1.74 8.04 -51.93 -0.42 1.32 16 27 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 29 H 0.41 4.37 8.58 -40.82 -0.35 4.02 16 30 H 0.43 2.41 9.11 45.56 0.42 2.83 16 31 H 0.13 3.15 5.16 -52.48 -0.27 2.88 16 32 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.18 4.20 4.50 -56.37 -0.25 3.95 16 LS Contribution 304.01 15.07 4.58 4.58 Total: -1.00 -30.23 304.01 -6.37 -36.60 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -2.96 Total: 15.34 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -2.28 Total: 0.08 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.11 Total: -39.20 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.80 Total: -29.99 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.23 -6.37 -36.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739076510.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.278 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds