Wall clock time and date at job start Mon Mar 30 2020 23:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31432 * 1 3 3 Si 1.86798 * 120.00104 * 2 1 4 4 H 1.48494 * 109.47349 * 240.00037 * 3 2 1 5 5 H 1.48497 * 109.47040 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47042 * 119.99808 * 3 2 1 7 7 C 1.38888 * 119.99505 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99564 * 189.24865 * 7 2 1 9 9 N 1.37137 * 120.00163 * 9.24700 * 7 2 1 10 10 C 1.34779 * 119.99968 * 235.66457 * 9 7 2 11 11 O 1.21280 * 120.00170 * 185.67611 * 10 9 7 12 12 C 1.50706 * 119.99925 * 5.68127 * 10 9 7 13 13 C 1.52998 * 109.47064 * 174.83593 * 12 10 9 14 14 N 1.46500 * 109.47261 * 180.02562 * 13 12 10 15 15 C 1.34767 * 120.00067 * 179.97438 * 14 13 12 16 16 O 1.21510 * 120.00274 * 359.97438 * 15 14 13 17 17 O 1.34640 * 119.99891 * 179.97438 * 15 14 13 18 18 C 1.39785 * 120.00264 * 55.67404 * 9 7 2 19 19 C 1.38962 * 120.07702 * 355.17985 * 18 9 7 20 20 C 1.38078 * 119.92712 * 179.97438 * 19 18 9 21 21 C 1.38316 * 120.07440 * 0.02562 * 20 19 18 22 22 C 1.38314 * 120.15564 * 359.97438 * 21 20 19 23 23 C 1.38083 * 120.07414 * 0.02562 * 22 21 20 24 24 H 0.97001 * 119.99540 * 4.98959 * 1 2 3 25 25 H 1.09000 * 109.46964 * 294.83919 * 12 10 9 26 26 H 1.09006 * 109.47127 * 54.83825 * 12 10 9 27 27 H 1.09007 * 109.46868 * 299.99828 * 13 12 10 28 28 H 1.08998 * 109.47145 * 59.99834 * 13 12 10 29 29 H 0.97008 * 119.99731 * 359.97438 * 14 13 12 30 30 H 0.96698 * 117.00280 * 180.02562 * 17 15 14 31 31 H 1.08007 * 120.03591 * 359.71455 * 19 18 9 32 32 H 1.07997 * 119.96713 * 179.97438 * 20 19 18 33 33 H 1.07994 * 119.92157 * 179.97438 * 21 20 19 34 34 H 1.07995 * 119.95926 * 180.02562 * 22 21 20 35 35 H 1.08009 * 120.03564 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1021 1.6964 -1.2124 5 1 1.2834 2.7464 0.0006 6 1 3.1021 1.6964 1.2126 7 6 2.0087 -1.2029 -0.0005 8 1 3.0782 -1.2090 0.1498 9 7 1.3363 -2.3827 -0.1919 10 6 1.4382 -3.3716 0.7181 11 8 0.9286 -4.4505 0.5008 12 6 2.1852 -3.1368 2.0057 13 6 2.0425 -4.3633 2.9091 14 7 2.7681 -4.1348 4.1611 15 6 2.7816 -5.0862 5.1155 16 8 2.1915 -6.1335 4.9378 17 8 3.4489 -4.8764 6.2659 18 6 0.5454 -2.5597 -1.3308 19 6 0.3586 -1.5077 -2.2193 20 6 -0.4228 -1.6861 -3.3437 21 6 -1.0198 -2.9101 -3.5858 22 6 -0.8361 -3.9594 -2.7036 23 6 -0.0559 -3.7879 -1.5772 24 1 -0.4849 0.8369 -0.0731 25 1 3.2395 -2.9664 1.7882 26 1 1.7726 -2.2634 2.5110 27 1 0.9880 -4.5336 3.1266 28 1 2.4549 -5.2366 2.4039 29 1 3.2389 -3.2986 4.3031 30 1 3.4302 -5.5880 6.9203 31 1 0.8207 -0.5503 -2.0285 32 1 -0.5688 -0.8688 -4.0344 33 1 -1.6308 -3.0468 -4.4657 34 1 -1.3033 -4.9138 -2.8959 35 1 0.0868 -4.6076 -0.8885 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739076510.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:05 Heat of formation + Delta-G solvation = -98.739017 kcal Electronic energy + Delta-G solvation = -21302.826332 eV Core-core repulsion = 17879.667340 eV Total energy + Delta-G solvation = -3423.158992 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.58846 -41.17129 -39.05745 -37.32319 -36.83054 -36.25879 -33.80682 -32.28051 -31.31518 -30.14390 -27.08420 -25.60680 -23.38788 -22.84779 -22.47555 -21.23125 -20.02495 -19.22387 -18.38805 -17.86560 -17.46438 -17.18372 -16.82691 -16.33774 -16.18139 -15.68085 -15.12488 -14.93555 -14.73434 -14.50965 -14.37028 -13.90746 -13.63654 -13.32282 -13.03668 -12.79881 -12.69965 -12.68288 -12.45612 -12.31483 -12.12917 -11.86183 -11.72212 -11.00816 -10.52818 -10.32555 -9.94631 -9.52115 -8.69246 -8.11668 -6.43152 0.69641 0.82952 1.37305 1.46706 1.50785 1.58861 1.75971 1.98837 2.28496 2.83663 2.96000 3.37342 3.66712 3.93992 4.11747 4.15090 4.33534 4.39665 4.59211 4.65430 4.91451 4.93008 4.98083 5.03676 5.20973 5.22524 5.40407 5.44765 5.80865 5.81807 5.90801 5.91403 6.06188 6.26315 6.42762 6.64067 7.01746 7.41998 7.43763 7.81070 8.66833 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016164 B = 0.005505 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.841480 B = 5084.697889 C = 6635.457972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.023 3.977 3 Si 0.978 3.022 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.252 1.252 7 C -0.381 4.381 8 H 0.107 0.893 9 N -0.396 5.396 10 C 0.482 3.518 11 O -0.588 6.588 12 C -0.113 4.113 13 C 0.165 3.835 14 N -0.693 5.693 15 C 0.664 3.336 16 O -0.623 6.623 17 O -0.515 6.515 18 C 0.152 3.848 19 C -0.126 4.126 20 C -0.126 4.126 21 C -0.166 4.166 22 C -0.121 4.121 23 C -0.218 4.218 24 H 0.274 0.726 25 H 0.120 0.880 26 H 0.106 0.894 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.422 0.578 30 H 0.446 0.554 31 H 0.118 0.882 32 H 0.132 0.868 33 H 0.140 0.860 34 H 0.134 0.866 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.857 -0.250 4.240 7.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.183 4.183 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.176 1.176 7 C -0.508 4.508 8 H 0.124 0.876 9 N -0.103 5.103 10 C 0.275 3.725 11 O -0.474 6.474 12 C -0.152 4.152 13 C 0.042 3.958 14 N -0.354 5.354 15 C 0.416 3.584 16 O -0.515 6.515 17 O -0.326 6.326 18 C 0.055 3.945 19 C -0.147 4.147 20 C -0.145 4.145 21 C -0.185 4.185 22 C -0.140 4.140 23 C -0.237 4.237 24 H 0.084 0.916 25 H 0.138 0.862 26 H 0.125 0.875 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.260 0.740 30 H 0.309 0.691 31 H 0.136 0.864 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.151 0.849 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.253 -0.805 3.994 6.648 hybrid contribution 0.118 0.869 0.361 0.948 sum 5.370 0.064 4.355 6.915 Atomic orbital electron populations 1.70153 1.07827 1.29441 1.43623 1.26357 0.95680 1.02999 0.93296 0.85218 0.78116 0.76540 0.80043 1.19107 1.21281 1.17618 1.19667 0.92909 0.82620 1.55585 0.87554 1.41220 1.39839 1.14278 1.14993 1.21322 0.81542 0.83679 0.85969 1.90205 1.51311 1.27236 1.78626 1.21360 1.03116 0.98725 0.92028 1.20800 0.95960 0.97542 0.81533 1.44430 1.55977 1.19457 1.15576 1.17811 0.77428 0.82482 0.80672 1.91049 1.50433 1.28501 1.81564 1.84158 1.69743 1.51987 1.26759 1.18648 0.94098 0.93899 0.87821 1.21076 1.01107 0.98195 0.94330 1.21163 0.98118 0.98112 0.97090 1.21216 1.02918 0.93310 1.01020 1.21248 0.98688 0.99577 0.94492 1.22855 1.01071 0.98921 1.00880 0.91646 0.86220 0.87534 0.92698 0.91560 0.73989 0.69054 0.86381 0.84984 0.84184 0.84856 0.82098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.21 11.39 21.65 0.25 -43.96 16 2 C 0.02 1.06 3.49 84.91 0.30 1.36 16 3 Si 0.98 35.47 29.57 68.60 2.03 37.50 16 4 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 5 H -0.29 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.25 -8.47 7.11 99.48 0.71 -7.77 16 7 C -0.38 -17.47 7.61 84.02 0.64 -16.84 16 8 H 0.11 4.44 7.85 -2.91 -0.02 4.42 16 9 N -0.40 -19.18 2.62 -458.89 -1.20 -20.38 16 10 C 0.48 21.65 7.57 87.66 0.66 22.31 16 11 O -0.59 -28.61 12.37 -3.03 -0.04 -28.65 16 12 C -0.11 -3.75 4.64 29.85 0.14 -3.61 16 13 C 0.17 5.29 4.98 86.38 0.43 5.72 16 14 N -0.69 -17.61 5.56 -590.86 -3.29 -20.89 16 15 C 0.66 18.10 9.12 129.79 1.18 19.28 16 16 O -0.62 -22.43 17.13 19.81 0.34 -22.09 16 17 O -0.51 -9.36 13.48 -55.49 -0.75 -10.11 16 18 C 0.15 7.58 6.05 38.22 0.23 7.81 16 19 C -0.13 -5.95 7.87 22.41 0.18 -5.78 16 20 C -0.13 -5.06 10.04 22.25 0.22 -4.83 16 21 C -0.17 -6.12 10.04 22.31 0.22 -5.90 16 22 C -0.12 -4.87 10.04 22.25 0.22 -4.65 16 23 C -0.22 -10.35 9.06 22.40 0.20 -10.15 16 24 H 0.27 13.18 8.32 -92.71 -0.77 12.41 16 25 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 26 H 0.11 3.52 8.04 -2.38 -0.02 3.50 16 27 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.07 2.30 8.04 -2.39 -0.02 2.28 16 29 H 0.42 8.14 8.58 -92.70 -0.80 7.34 16 30 H 0.45 3.96 9.11 -74.06 -0.67 3.29 16 31 H 0.12 5.77 5.16 -2.91 -0.01 5.76 16 32 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 33 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 34 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 35 H 0.16 8.08 4.50 -64.47 -0.29 7.79 16 Total: -1.00 -66.72 304.01 1.38 -65.35 By element: Atomic # 1 Polarization: 39.09 SS G_CDS: -0.60 Total: 38.49 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 4.63 Total: 4.73 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -4.24 Total: -85.23 kcal Atomic # 8 Polarization: -60.39 SS G_CDS: -0.45 Total: -60.84 kcal Atomic # 14 Polarization: 35.47 SS G_CDS: 2.03 Total: 37.50 kcal Total: -66.72 1.38 -65.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739076510.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.393 kcal (2) G-P(sol) polarization free energy of solvation -66.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds