Wall clock time and date at job start Tue Mar 31 2020 00:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86801 * 120.00162 * 2 1 4 4 H 1.48494 * 109.47095 * 239.99987 * 3 2 1 5 5 H 1.48502 * 109.46889 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47013 * 119.99582 * 3 2 1 7 7 C 1.38950 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00192 * 171.26024 * 7 2 1 9 9 N 1.37101 * 120.00048 * 351.26180 * 7 2 1 10 10 C 1.46496 * 119.99806 * 22.99804 * 9 7 2 11 11 C 1.50703 * 109.46832 * 269.99647 * 10 9 7 12 12 O 1.20823 * 120.00080 * 0.02562 * 11 10 9 13 13 O 1.34232 * 120.00186 * 179.97438 * 11 10 9 14 14 C 1.34779 * 120.00073 * 202.99165 * 9 7 2 15 15 O 1.21292 * 119.99492 * 185.01799 * 14 9 7 16 16 C 1.50697 * 120.00152 * 5.02087 * 14 9 7 17 17 C 1.52994 * 109.47218 * 174.79465 * 16 14 9 18 18 C 1.50706 * 109.47237 * 179.97438 * 17 16 14 19 19 C 1.38654 * 120.78739 * 89.99735 * 18 17 16 20 20 C 1.38203 * 119.16001 * 180.02562 * 19 18 17 21 21 N 1.31872 * 120.76285 * 0.26505 * 20 19 18 22 22 C 1.31873 * 121.72759 * 359.46620 * 21 20 19 23 23 C 1.38201 * 120.76063 * 0.53164 * 22 21 20 24 24 H 0.96995 * 120.00540 * 5.01085 * 1 2 3 25 25 H 1.09004 * 109.47341 * 29.99616 * 10 9 7 26 26 H 1.09003 * 109.47232 * 150.00182 * 10 9 7 27 27 H 0.96700 * 117.00342 * 180.02562 * 13 11 10 28 28 H 1.09003 * 109.47309 * 54.79078 * 16 14 9 29 29 H 1.09002 * 109.46790 * 294.79461 * 16 14 9 30 30 H 1.08998 * 109.47067 * 60.00310 * 17 16 14 31 31 H 1.09002 * 109.47237 * 299.99722 * 17 16 14 32 32 H 1.08000 * 120.41919 * 0.04848 * 19 18 17 33 33 H 1.08002 * 119.61598 * 179.97438 * 20 19 18 34 34 H 1.07997 * 119.61999 * 180.27139 * 22 21 20 35 35 H 1.08003 * 120.41721 * 179.72611 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6963 -1.2124 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0088 -1.2033 0.0005 8 1 3.0794 -1.2088 -0.1416 9 7 1.3353 -2.3837 0.1814 10 6 -0.0953 -2.4648 -0.1234 11 6 -0.8917 -2.1136 1.1069 12 8 -0.3226 -1.8247 2.1328 13 8 -2.2333 -2.1208 1.0627 14 6 1.9894 -3.4694 0.6396 15 8 1.4166 -4.5360 0.7135 16 6 3.4322 -3.3582 1.0601 17 6 3.8936 -4.6893 1.6568 18 6 5.3367 -4.5782 2.0767 19 6 5.6737 -4.1603 3.3551 20 6 7.0078 -4.0700 3.7043 21 7 7.9540 -4.3709 2.8364 22 6 7.6704 -4.7766 1.6141 23 6 6.3589 -4.8909 1.1938 24 1 -0.4851 0.8367 -0.0734 25 1 -0.3365 -1.7657 -0.9242 26 1 -0.3426 -3.4784 -0.4391 27 1 -2.7006 -1.8882 1.8767 28 1 3.5333 -2.5707 1.8069 29 1 4.0459 -3.1168 0.1922 30 1 3.7925 -5.4767 0.9099 31 1 3.2798 -4.9306 2.5246 32 1 4.9033 -3.9087 4.0690 33 1 7.2786 -3.7448 4.6979 34 1 8.4724 -5.0183 0.9324 35 1 6.1330 -5.2196 0.1900 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739077071.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:25 Heat of formation + Delta-G solvation = -88.458599 kcal Electronic energy + Delta-G solvation = -21377.874421 eV Core-core repulsion = 17955.161221 eV Total energy + Delta-G solvation = -3422.713200 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.07941 -39.33768 -38.17483 -35.36628 -34.56425 -34.30515 -31.61935 -31.10816 -30.41133 -27.89321 -25.21263 -24.19486 -23.35505 -21.56351 -20.52886 -19.25886 -17.11091 -16.97021 -16.58103 -16.29621 -15.89807 -15.54391 -15.44510 -14.40691 -14.39067 -14.33327 -14.29374 -13.74473 -13.56282 -12.97221 -12.55276 -12.02547 -11.91433 -11.81516 -11.51562 -11.46625 -11.26547 -10.98333 -10.66366 -10.52462 -10.47134 -10.28574 -9.61839 -9.41201 -9.38649 -9.09277 -9.07478 -8.64622 -8.03264 -6.51726 -4.14846 1.21787 1.35939 3.04717 3.14108 3.14853 3.55030 3.72402 3.89132 3.98650 4.26936 4.51610 4.62421 4.87049 4.95444 5.02749 5.22315 5.24919 5.57817 5.61451 5.72654 5.86967 5.94219 6.16986 6.18989 6.28974 6.42634 6.56633 6.64249 6.67689 6.80979 6.86529 7.24593 7.54251 7.64033 8.03064 8.17739 8.90533 9.18185 9.29225 9.68378 10.49903 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018203 B = 0.005185 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.875158 B = 5398.559516 C = 6313.576677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.043 3.957 3 Si 0.933 3.067 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.327 4.327 8 H 0.102 0.898 9 N -0.433 5.433 10 C 0.153 3.847 11 C 0.504 3.496 12 O -0.525 6.525 13 O -0.533 6.533 14 C 0.471 3.529 15 O -0.604 6.604 16 C -0.110 4.110 17 C -0.068 4.068 18 C -0.026 4.026 19 C -0.170 4.170 20 C 0.095 3.905 21 N -0.497 5.497 22 C 0.095 3.905 23 C -0.171 4.171 24 H 0.274 0.726 25 H 0.138 0.862 26 H 0.077 0.923 27 H 0.388 0.612 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.135 0.865 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.205 -4.097 1.127 7.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.161 4.161 3 Si 0.759 3.241 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.454 4.454 8 H 0.120 0.880 9 N -0.152 5.152 10 C 0.028 3.972 11 C 0.346 3.654 12 O -0.412 6.412 13 O -0.344 6.344 14 C 0.260 3.740 15 O -0.491 6.491 16 C -0.150 4.150 17 C -0.106 4.106 18 C -0.035 4.035 19 C -0.189 4.189 20 C -0.061 4.061 21 N -0.206 5.206 22 C -0.062 4.062 23 C -0.191 4.191 24 H 0.086 0.914 25 H 0.155 0.845 26 H 0.095 0.905 27 H 0.244 0.756 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.153 0.847 33 H 0.170 0.830 34 H 0.169 0.831 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.019 -4.388 1.375 8.391 hybrid contribution -0.906 1.324 0.331 1.638 sum 6.113 -3.065 1.705 7.048 Atomic orbital electron populations 1.69581 1.06266 1.28337 1.48370 1.25303 0.95578 1.00011 0.95185 0.85896 0.78924 0.80268 0.78996 1.19782 1.20772 1.19687 1.19628 0.93664 0.82546 1.49589 0.88013 1.43333 1.06110 1.10072 1.55670 1.20597 0.81027 1.01539 0.94047 1.23722 0.79356 0.71744 0.90558 1.90539 1.71051 1.45758 1.33876 1.84534 1.22727 1.83481 1.43617 1.20205 0.89201 0.84208 0.80344 1.90536 1.70238 1.28619 1.59688 1.21304 0.94652 0.97216 1.01826 1.20440 0.89433 0.98512 1.02221 1.20540 0.96694 0.93015 0.93206 1.22138 0.98032 1.01498 0.97279 1.22704 0.88875 0.95772 0.98749 1.67639 1.37908 1.11690 1.03395 1.22695 0.95428 0.95307 0.92775 1.22098 0.93590 1.02449 1.00957 0.91450 0.84456 0.90522 0.75594 0.89312 0.90051 0.90012 0.90172 0.84721 0.83030 0.83060 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.24 8.21 55.50 0.46 -21.79 16 2 C 0.04 1.04 5.41 -17.47 -0.09 0.94 16 3 Si 0.93 19.34 29.57 -169.99 -5.03 14.31 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.33 -7.96 9.00 -14.93 -0.13 -8.10 16 8 H 0.10 2.30 6.72 -52.49 -0.35 1.95 16 9 N -0.43 -10.60 2.11 -116.09 -0.25 -10.84 16 10 C 0.15 3.64 5.29 -5.19 -0.03 3.61 16 11 C 0.50 12.19 6.29 36.01 0.23 12.41 16 12 O -0.53 -14.29 16.95 -18.75 -0.32 -14.60 16 13 O -0.53 -10.68 13.42 -39.26 -0.53 -11.21 16 14 C 0.47 10.95 7.62 -10.99 -0.08 10.86 16 15 O -0.60 -15.16 15.54 5.55 0.09 -15.07 16 16 C -0.11 -2.06 4.23 -27.89 -0.12 -2.17 16 17 C -0.07 -1.10 4.70 -27.88 -0.13 -1.23 16 18 C -0.03 -0.37 5.17 -104.31 -0.54 -0.91 16 19 C -0.17 -2.26 9.82 -39.44 -0.39 -2.64 16 20 C 0.10 1.22 11.18 -17.55 -0.20 1.02 16 21 N -0.50 -6.88 10.36 -13.25 -0.14 -7.02 16 22 C 0.09 1.17 11.18 -17.55 -0.20 0.97 16 23 C -0.17 -2.17 9.82 -39.44 -0.39 -2.56 16 24 H 0.27 6.67 8.32 -40.82 -0.34 6.33 16 25 H 0.14 3.29 6.28 -51.93 -0.33 2.96 16 26 H 0.08 1.74 7.36 -51.93 -0.38 1.35 16 27 H 0.39 6.03 9.10 45.56 0.41 6.44 16 28 H 0.09 1.71 8.03 -51.93 -0.42 1.29 16 29 H 0.08 1.41 7.74 -51.93 -0.40 1.01 16 30 H 0.08 1.31 8.00 -51.93 -0.42 0.89 16 31 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 32 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 33 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 309.08 15.07 4.66 4.66 Total: -1.00 -31.48 309.08 -6.25 -37.73 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -3.13 Total: 11.62 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: -2.07 Total: 12.20 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.07 Total: -39.64 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -0.76 Total: -40.89 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.48 -6.25 -37.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077071.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.727 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds