Wall clock time and date at job start Tue Mar 31 2020 00:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86801 * 120.00162 * 2 1 4 4 H 1.48494 * 109.47095 * 239.99987 * 3 2 1 5 5 H 1.48502 * 109.46889 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47013 * 119.99582 * 3 2 1 7 7 C 1.38950 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00192 * 171.26024 * 7 2 1 9 9 N 1.37101 * 120.00048 * 351.26180 * 7 2 1 10 10 C 1.46496 * 119.99806 * 22.99804 * 9 7 2 11 11 C 1.50703 * 109.46832 * 269.99647 * 10 9 7 12 12 O 1.20823 * 120.00080 * 0.02562 * 11 10 9 13 13 O 1.34232 * 120.00186 * 179.97438 * 11 10 9 14 14 C 1.34779 * 120.00073 * 202.99165 * 9 7 2 15 15 O 1.21292 * 119.99492 * 185.01799 * 14 9 7 16 16 C 1.50697 * 120.00152 * 5.02087 * 14 9 7 17 17 C 1.52994 * 109.47218 * 174.79465 * 16 14 9 18 18 C 1.50706 * 109.47237 * 179.97438 * 17 16 14 19 19 C 1.38654 * 120.78739 * 89.99735 * 18 17 16 20 20 C 1.38203 * 119.16001 * 180.02562 * 19 18 17 21 21 N 1.31872 * 120.76285 * 0.26505 * 20 19 18 22 22 C 1.31873 * 121.72759 * 359.46620 * 21 20 19 23 23 C 1.38201 * 120.76063 * 0.53164 * 22 21 20 24 24 H 0.96995 * 120.00540 * 5.01085 * 1 2 3 25 25 H 1.09004 * 109.47341 * 29.99616 * 10 9 7 26 26 H 1.09003 * 109.47232 * 150.00182 * 10 9 7 27 27 H 0.96700 * 117.00342 * 180.02562 * 13 11 10 28 28 H 1.09003 * 109.47309 * 54.79078 * 16 14 9 29 29 H 1.09002 * 109.46790 * 294.79461 * 16 14 9 30 30 H 1.08998 * 109.47067 * 60.00310 * 17 16 14 31 31 H 1.09002 * 109.47237 * 299.99722 * 17 16 14 32 32 H 1.08000 * 120.41919 * 0.04848 * 19 18 17 33 33 H 1.08002 * 119.61598 * 179.97438 * 20 19 18 34 34 H 1.07997 * 119.61999 * 180.27139 * 22 21 20 35 35 H 1.08003 * 120.41721 * 179.72611 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6963 -1.2124 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0088 -1.2033 0.0005 8 1 3.0794 -1.2088 -0.1416 9 7 1.3353 -2.3837 0.1814 10 6 -0.0953 -2.4648 -0.1234 11 6 -0.8917 -2.1136 1.1069 12 8 -0.3226 -1.8247 2.1328 13 8 -2.2333 -2.1208 1.0627 14 6 1.9894 -3.4694 0.6396 15 8 1.4166 -4.5360 0.7135 16 6 3.4322 -3.3582 1.0601 17 6 3.8936 -4.6893 1.6568 18 6 5.3367 -4.5782 2.0767 19 6 5.6737 -4.1603 3.3551 20 6 7.0078 -4.0700 3.7043 21 7 7.9540 -4.3709 2.8364 22 6 7.6704 -4.7766 1.6141 23 6 6.3589 -4.8909 1.1938 24 1 -0.4851 0.8367 -0.0734 25 1 -0.3365 -1.7657 -0.9242 26 1 -0.3426 -3.4784 -0.4391 27 1 -2.7006 -1.8882 1.8767 28 1 3.5333 -2.5707 1.8069 29 1 4.0459 -3.1168 0.1922 30 1 3.7925 -5.4767 0.9099 31 1 3.2798 -4.9306 2.5246 32 1 4.9033 -3.9087 4.0690 33 1 7.2786 -3.7448 4.6979 34 1 8.4724 -5.0183 0.9324 35 1 6.1330 -5.2196 0.1900 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739077071.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:25 Heat of formation + Delta-G solvation = -108.225579 kcal Electronic energy + Delta-G solvation = -21378.731582 eV Core-core repulsion = 17955.161221 eV Total energy + Delta-G solvation = -3423.570360 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.31210 -40.97265 -39.97166 -37.13144 -36.40781 -35.62845 -33.48161 -32.06513 -31.78035 -29.62390 -26.91684 -25.70459 -24.32318 -22.94748 -22.08294 -21.07462 -18.94125 -18.70237 -18.13976 -17.49390 -17.26235 -17.21259 -16.44443 -16.19021 -16.16854 -16.01914 -15.86437 -14.89548 -14.57915 -14.51974 -14.12103 -13.60322 -13.47316 -13.32067 -13.12464 -12.98469 -12.70251 -12.59149 -12.42547 -12.18845 -12.12231 -11.85285 -11.50902 -10.97375 -10.65329 -10.41919 -10.31524 -10.02935 -9.91175 -8.35485 -6.03452 0.26143 0.31678 1.39878 1.46260 1.54530 1.73779 1.89511 2.23511 2.53915 2.86383 3.01090 3.16847 3.63565 3.74989 3.87160 4.17544 4.27223 4.28937 4.32406 4.37472 4.53647 4.73832 4.79228 4.87177 4.91098 5.00258 5.02053 5.13074 5.20475 5.40101 5.52708 5.72574 5.83911 5.92579 6.31925 7.04623 7.06525 7.38374 7.46605 7.84841 8.65830 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018203 B = 0.005185 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.875158 B = 5398.559516 C = 6313.576677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.001 4.001 3 Si 0.994 3.006 4 H -0.257 1.257 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.342 4.342 8 H 0.116 0.884 9 N -0.446 5.446 10 C 0.150 3.850 11 C 0.507 3.493 12 O -0.562 6.562 13 O -0.521 6.521 14 C 0.459 3.541 15 O -0.629 6.629 16 C -0.100 4.100 17 C -0.055 4.055 18 C -0.041 4.041 19 C -0.178 4.178 20 C 0.092 3.908 21 N -0.515 5.515 22 C 0.092 3.908 23 C -0.171 4.171 24 H 0.273 0.727 25 H 0.134 0.866 26 H 0.081 0.919 27 H 0.410 0.590 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.141 0.859 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.669 -3.701 0.928 8.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.201 4.201 3 Si 0.818 3.182 4 H -0.181 1.181 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.134 0.866 9 N -0.164 5.164 10 C 0.024 3.976 11 C 0.351 3.649 12 O -0.452 6.452 13 O -0.333 6.333 14 C 0.250 3.750 15 O -0.517 6.517 16 C -0.139 4.139 17 C -0.093 4.093 18 C -0.049 4.049 19 C -0.198 4.198 20 C -0.064 4.064 21 N -0.225 5.225 22 C -0.064 4.064 23 C -0.191 4.191 24 H 0.083 0.917 25 H 0.151 0.849 26 H 0.099 0.901 27 H 0.269 0.731 28 H 0.101 0.899 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.159 0.841 33 H 0.193 0.807 34 H 0.198 0.802 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.463 -4.000 1.165 9.433 hybrid contribution -1.441 1.152 0.392 1.887 sum 7.021 -2.848 1.557 7.736 Atomic orbital electron populations 1.69673 1.07334 1.28690 1.48974 1.26116 0.96350 1.02820 0.94832 0.84954 0.77683 0.76334 0.79214 1.18104 1.21178 1.20066 1.20015 0.94451 0.82683 1.49704 0.86630 1.43582 1.06377 1.10571 1.55908 1.20613 0.81413 1.01571 0.93991 1.23752 0.80325 0.70863 0.89988 1.90514 1.72058 1.47579 1.35044 1.84461 1.20961 1.82844 1.45021 1.20995 0.90872 0.83524 0.79623 1.90505 1.71239 1.29401 1.60588 1.21255 0.91878 0.98552 1.02254 1.20245 0.90718 0.96955 1.01412 1.20427 0.95699 0.94635 0.94144 1.22284 0.98697 1.01558 0.97236 1.23089 0.88425 0.95202 0.99706 1.67706 1.38419 1.12200 1.04153 1.23181 0.96108 0.94323 0.92763 1.22308 0.93407 1.01854 1.01521 0.91704 0.84902 0.90066 0.73064 0.89911 0.88400 0.90076 0.91558 0.84147 0.80658 0.80190 0.83025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.41 8.21 21.66 0.18 -45.23 16 2 C 0.00 -0.04 5.41 84.93 0.46 0.42 16 3 Si 0.99 38.84 29.57 68.60 2.03 40.87 16 4 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 5 H -0.29 -11.26 7.11 99.48 0.71 -10.56 16 6 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.34 -16.46 9.00 84.04 0.76 -15.70 16 8 H 0.12 5.08 6.72 -2.91 -0.02 5.06 16 9 N -0.45 -21.87 2.11 -639.59 -1.35 -23.22 16 10 C 0.15 7.17 5.29 85.63 0.45 7.62 16 11 C 0.51 24.57 6.29 71.24 0.45 25.01 16 12 O -0.56 -30.78 16.95 21.97 0.37 -30.41 16 13 O -0.52 -20.48 13.42 -51.43 -0.69 -21.17 16 14 C 0.46 21.39 7.62 87.66 0.67 22.06 16 15 O -0.63 -31.85 15.54 -3.07 -0.05 -31.90 16 16 C -0.10 -3.66 4.23 29.85 0.13 -3.54 16 17 C -0.06 -1.76 4.70 29.85 0.14 -1.62 16 18 C -0.04 -1.11 5.17 -19.67 -0.10 -1.21 16 19 C -0.18 -4.51 9.82 22.36 0.22 -4.30 16 20 C 0.09 2.17 11.18 84.68 0.95 3.12 16 21 N -0.52 -13.13 10.36 -195.84 -2.03 -15.16 16 22 C 0.09 2.05 11.18 84.68 0.95 3.00 16 23 C -0.17 -3.98 9.82 22.36 0.22 -3.76 16 24 H 0.27 13.20 8.32 -92.71 -0.77 12.43 16 25 H 0.13 6.44 6.28 -2.38 -0.01 6.43 16 26 H 0.08 3.73 7.36 -2.39 -0.02 3.71 16 27 H 0.41 12.22 9.10 -74.06 -0.67 11.55 16 28 H 0.08 3.15 8.03 -2.39 -0.02 3.13 16 29 H 0.10 3.25 7.74 -2.39 -0.02 3.23 16 30 H 0.08 2.55 8.00 -2.39 -0.02 2.53 16 31 H 0.07 2.25 8.10 -2.39 -0.02 2.23 16 32 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 33 H 0.18 3.11 8.06 -2.91 -0.02 3.09 16 34 H 0.18 2.80 8.06 -2.91 -0.02 2.78 16 35 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -66.30 309.08 4.20 -62.10 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: 0.45 Total: 33.02 kcal Atomic # 6 Polarization: 25.84 SS G_CDS: 5.28 Total: 31.12 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -3.20 Total: -83.62 kcal Atomic # 8 Polarization: -83.11 SS G_CDS: -0.37 Total: -83.48 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -66.30 4.20 -62.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077071.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.124 kcal (2) G-P(sol) polarization free energy of solvation -66.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds