Wall clock time and date at job start Mon Mar 30 2020 23:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86802 * 120.00003 * 2 1 4 4 H 1.48504 * 109.46921 * 274.97794 * 3 2 1 5 5 H 1.48497 * 109.47178 * 34.97817 * 3 2 1 6 6 H 1.48499 * 109.47044 * 154.98071 * 3 2 1 7 7 C 1.39909 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99882 * 197.77556 * 7 2 1 9 9 C 1.41156 * 119.99707 * 17.78507 * 7 2 1 10 10 C 1.40871 * 120.16574 * 25.02137 * 9 7 2 11 11 C 1.36367 * 119.82736 * 180.25051 * 10 9 7 12 12 C 1.39481 * 120.17067 * 359.48347 * 11 10 9 13 13 N 1.39232 * 119.83739 * 180.29785 * 12 11 10 14 14 C 1.34781 * 119.99794 * 324.05661 * 13 12 11 15 15 O 1.21278 * 120.00112 * 5.18841 * 14 13 12 16 16 C 1.50697 * 120.00008 * 185.18133 * 14 13 12 17 17 C 1.52996 * 109.47217 * 180.02562 * 16 14 13 18 18 N 1.46501 * 109.47107 * 179.97438 * 17 16 14 19 19 C 1.34781 * 119.99898 * 179.97438 * 18 17 16 20 20 O 1.21508 * 120.00084 * 0.02562 * 19 18 17 21 21 O 1.34635 * 119.99860 * 180.02562 * 19 18 17 22 22 C 1.39480 * 120.32954 * 0.27398 * 12 11 10 23 23 C 1.36371 * 120.17132 * 359.97438 * 22 12 11 24 24 H 0.97008 * 119.99881 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.08333 * 0.03691 * 10 9 7 26 26 H 1.08005 * 119.91992 * 179.75715 * 11 10 9 27 27 H 0.97003 * 120.00442 * 144.05986 * 13 12 11 28 28 H 1.09000 * 109.47121 * 300.00346 * 16 14 13 29 29 H 1.08997 * 109.47320 * 60.00166 * 16 14 13 30 30 H 1.09000 * 109.47140 * 300.00068 * 17 16 14 31 31 H 1.09001 * 109.47478 * 59.99954 * 17 16 14 32 32 H 0.96995 * 120.00359 * 0.02562 * 18 17 16 33 33 H 0.96705 * 117.00091 * 180.02562 * 21 19 18 34 34 H 1.08001 * 119.91838 * 180.02562 * 22 12 11 35 35 H 1.08005 * 120.08603 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3850 2.1072 -1.3948 5 1 1.4968 2.6200 0.8026 6 1 3.5890 1.4121 0.5921 7 6 2.0083 -1.2117 0.0005 8 1 3.0496 -1.2338 0.2861 9 6 1.3530 -2.4050 -0.3723 10 6 0.2278 -2.3600 -1.2187 11 6 -0.4031 -3.5167 -1.5704 12 6 0.0696 -4.7430 -1.1031 13 7 -0.5761 -5.9202 -1.4716 14 6 -1.9167 -5.9386 -1.6100 15 8 -2.5512 -4.9103 -1.5062 16 6 -2.6272 -7.2369 -1.8940 17 6 -4.1316 -6.9814 -2.0048 18 7 -4.8222 -8.2435 -2.2814 19 6 -6.1627 -8.2618 -2.4200 20 8 -6.7984 -7.2315 -2.3158 21 8 -6.7974 -9.4217 -2.6737 22 6 1.1862 -4.7959 -0.2689 23 6 1.8245 -3.6473 0.0955 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1364 -1.4117 -1.5852 26 1 -1.2683 -3.4837 -2.2160 27 1 -0.0613 -6.7272 -1.6287 28 1 -2.2599 -7.6546 -2.8314 29 1 -2.4365 -7.9402 -1.0834 30 1 -4.4991 -6.5635 -1.0676 31 1 -4.3220 -6.2782 -2.8156 32 1 -4.3148 -9.0660 -2.3642 33 1 -7.7594 -9.3849 -2.7653 34 1 1.5467 -5.7491 0.0887 35 1 2.6892 -3.6899 0.7412 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739092647.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:34 Heat of formation + Delta-G solvation = -106.029977 kcal Electronic energy + Delta-G solvation = -20214.683816 eV Core-core repulsion = 16791.208664 eV Total energy + Delta-G solvation = -3423.475152 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.45949 -39.70205 -37.41745 -36.52150 -35.35605 -34.47631 -33.00354 -31.17334 -29.48864 -28.91172 -25.54809 -24.03152 -21.90451 -21.40957 -20.97062 -19.72123 -18.97034 -17.58420 -17.33286 -16.76823 -16.44026 -16.36497 -15.47760 -15.15727 -14.82984 -14.02685 -13.85166 -13.73770 -13.51277 -13.00401 -12.66467 -12.12514 -12.09377 -11.97419 -11.81361 -11.55116 -11.42910 -11.14537 -10.94320 -10.88889 -10.52834 -9.97535 -9.90019 -9.48975 -9.45162 -9.13475 -8.69652 -7.54159 -7.05201 -6.75589 -4.31069 2.12727 2.54858 2.62946 2.96558 3.07184 3.09684 3.11345 3.30971 3.70578 3.92716 4.36011 4.61139 4.64255 4.90098 5.02641 5.31424 5.68455 5.71234 5.80963 6.03305 6.12218 6.37916 6.39230 6.77758 6.97021 7.03343 7.11749 7.14442 7.27420 7.58345 7.64766 7.94521 8.04497 8.16972 8.17807 8.29056 8.61567 8.72013 8.87060 8.98671 10.17526 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.035523 B = 0.002978 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.031296 B = 9401.273319 C =10079.832607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.459 4.459 8 H 0.079 0.921 9 C 0.107 3.893 10 C -0.159 4.159 11 C -0.084 4.084 12 C -0.014 4.014 13 N -0.649 5.649 14 C 0.501 3.499 15 O -0.524 6.524 16 C -0.151 4.151 17 C 0.150 3.850 18 N -0.708 5.708 19 C 0.661 3.339 20 O -0.574 6.574 21 O -0.531 6.531 22 C -0.102 4.102 23 C -0.218 4.218 24 H 0.282 0.718 25 H 0.119 0.881 26 H 0.107 0.893 27 H 0.395 0.605 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.406 0.594 33 H 0.429 0.571 34 H 0.089 0.911 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.087 -15.862 -4.731 17.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.104 3.896 10 C -0.179 4.179 11 C -0.104 4.104 12 C -0.106 4.106 13 N -0.292 5.292 14 C 0.286 3.714 15 O -0.400 6.400 16 C -0.192 4.192 17 C 0.028 3.972 18 N -0.369 5.369 19 C 0.412 3.588 20 O -0.462 6.462 21 O -0.341 6.341 22 C -0.122 4.122 23 C -0.238 4.238 24 H 0.093 0.907 25 H 0.137 0.863 26 H 0.124 0.876 27 H 0.228 0.772 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.240 0.760 33 H 0.288 0.712 34 H 0.108 0.892 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.703 -14.504 -4.539 16.233 hybrid contribution 0.239 -0.102 -0.035 0.263 sum -5.464 -14.607 -4.574 16.252 Atomic orbital electron populations 1.69865 1.07574 1.29383 1.34231 1.25958 0.94737 1.01424 0.92348 0.86289 0.80542 0.80668 0.79166 1.19310 1.20262 1.18566 1.19575 0.98129 0.91296 1.39800 0.90324 1.17684 0.91154 0.92076 0.88644 1.21001 0.99099 0.96852 1.00932 1.20546 0.98788 0.91534 0.99504 1.17160 0.99925 0.84934 1.08576 1.42905 1.06069 1.12446 1.67788 1.20141 0.82645 0.90105 0.78514 1.90764 1.65739 1.34128 1.49394 1.21771 0.95022 0.97826 1.04597 1.21092 0.89190 0.83085 1.03832 1.44601 1.03723 1.12716 1.75845 1.17752 0.83313 0.81393 0.76344 1.91104 1.65972 1.33100 1.56059 1.84159 1.28780 1.35000 1.86193 1.20051 0.96837 0.97164 0.98113 1.20546 1.03952 0.92519 1.06772 0.90709 0.86299 0.87552 0.77202 0.88341 0.88235 0.89844 0.89894 0.75954 0.71163 0.89245 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.74 10.98 55.55 0.61 -20.13 16 2 C 0.07 1.87 5.13 -17.33 -0.09 1.78 16 3 Si 0.91 18.68 29.60 -169.99 -5.03 13.64 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.46 -12.11 9.04 -37.85 -0.34 -12.45 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 9 C 0.11 2.85 5.57 -106.80 -0.59 2.26 16 10 C -0.16 -4.24 8.63 -39.26 -0.34 -4.58 16 11 C -0.08 -2.06 8.61 -39.79 -0.34 -2.41 16 12 C -0.01 -0.30 6.30 -83.57 -0.53 -0.83 16 13 N -0.65 -10.52 5.30 -9.74 -0.05 -10.57 16 14 C 0.50 7.99 7.66 -10.99 -0.08 7.91 16 15 O -0.52 -11.07 13.42 5.56 0.07 -11.00 16 16 C -0.15 -1.46 5.82 -27.89 -0.16 -1.62 16 17 C 0.15 1.74 4.96 -4.04 -0.02 1.72 16 18 N -0.71 -6.58 5.56 -65.28 -0.36 -6.95 16 19 C 0.66 7.50 9.12 54.06 0.49 7.99 16 20 O -0.57 -9.06 17.13 -19.28 -0.33 -9.40 16 21 O -0.53 -4.07 13.48 -40.31 -0.54 -4.61 16 22 C -0.10 -2.17 9.90 -39.79 -0.39 -2.57 16 23 C -0.22 -5.22 9.74 -39.26 -0.38 -5.60 16 24 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 25 H 0.12 3.30 6.19 -52.49 -0.32 2.97 16 26 H 0.11 2.63 6.24 -52.48 -0.33 2.30 16 27 H 0.39 4.67 8.82 -40.82 -0.36 4.31 16 28 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 31 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 32 H 0.41 2.45 8.58 -40.82 -0.35 2.10 16 33 H 0.43 1.49 9.11 45.56 0.42 1.90 16 34 H 0.09 1.60 8.06 -52.49 -0.42 1.17 16 35 H 0.10 2.13 8.06 -52.48 -0.42 1.70 16 LS Contribution 311.02 15.07 4.69 4.69 Total: -1.00 -34.62 311.02 -6.76 -41.38 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -3.03 Total: 11.33 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -2.78 Total: -8.39 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.20 Total: -37.65 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.80 Total: -25.00 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.62 -6.76 -41.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739092647.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.654 kcal (2) G-P(sol) polarization free energy of solvation -34.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds