Wall clock time and date at job start Tue Mar 31 2020 00:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00193 * 2 1 4 4 H 1.48502 * 109.46839 * 269.99812 * 3 2 1 5 5 H 1.48499 * 109.47231 * 29.99527 * 3 2 1 6 6 H 1.48496 * 109.47211 * 150.00183 * 3 2 1 7 7 C 1.37872 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00084 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00280 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47529 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.47019 * 179.97438 * 10 9 7 12 12 C 1.34231 * 116.99791 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99834 * 0.02562 * 12 11 10 14 14 C 1.50696 * 119.99955 * 179.97438 * 12 11 10 15 15 N 1.46501 * 109.46929 * 180.02562 * 14 12 11 16 16 C 1.34780 * 119.99775 * 180.02562 * 15 14 12 17 17 O 1.21506 * 120.00220 * 0.02562 * 16 15 14 18 18 C 1.48175 * 119.99946 * 180.02562 * 16 15 14 19 19 C 1.39302 * 119.72217 * 179.97438 * 18 16 15 20 20 C 1.38596 * 119.05879 * 179.97438 * 19 18 16 21 21 C 1.38630 * 118.48552 * 0.02562 * 20 19 18 22 22 C 1.38558 * 119.35539 * 0.25409 * 21 20 19 23 23 N 1.31532 * 120.90059 * 359.49177 * 22 21 20 24 24 H 0.97007 * 119.99521 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46999 * 59.99436 * 9 7 2 26 26 H 1.09000 * 109.46787 * 300.00247 * 9 7 2 27 27 H 1.08998 * 109.46600 * 59.99415 * 10 9 7 28 28 H 1.08997 * 109.47019 * 300.00020 * 10 9 7 29 29 H 1.08997 * 109.46979 * 60.00694 * 14 12 11 30 30 H 1.08996 * 109.47518 * 300.00576 * 14 12 11 31 31 H 0.97001 * 120.00408 * 0.02562 * 15 14 12 32 32 H 1.07999 * 120.47505 * 0.02670 * 19 18 16 33 33 H 1.07999 * 120.75338 * 180.02562 * 20 19 18 34 34 H 1.08002 * 120.31909 * 179.97438 * 21 20 19 35 35 H 1.07995 * 119.54967 * 179.74631 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 8 1.5191 -4.9196 0.0011 12 6 2.2501 -6.0454 0.0007 13 8 3.4567 -5.9821 0.0003 14 6 1.5659 -7.3880 0.0019 15 7 2.5748 -8.4502 0.0017 16 6 2.1926 -9.7427 0.0021 17 8 1.0113 -10.0269 0.0021 18 6 3.2131 -10.8170 0.0025 19 6 2.8116 -12.1510 0.0035 20 6 3.7777 -13.1447 0.0033 21 6 5.1122 -12.7695 0.0027 22 6 5.4392 -11.4231 0.0077 23 7 4.5019 -10.5003 0.0029 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6043 0.8905 28 1 2.8718 -3.6045 -0.8894 29 1 0.9422 -7.4788 -0.8875 30 1 0.9440 -7.4782 0.8924 31 1 3.5180 -8.2234 0.0013 32 1 1.7624 -12.4072 0.0035 33 1 3.4971 -14.1877 0.0036 34 1 5.8894 -13.5194 0.0030 35 1 6.4779 -11.1273 0.0114 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000740330100.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:31 Heat of formation + Delta-G solvation = -91.754341 kcal Electronic energy + Delta-G solvation = -19806.258884 eV Core-core repulsion = 16383.402770 eV Total energy + Delta-G solvation = -3422.856114 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.98632 -40.18604 -39.04650 -36.43684 -34.73107 -33.38825 -33.00269 -31.89168 -30.47011 -28.50121 -25.23897 -24.51603 -23.84591 -21.51442 -20.95428 -20.61747 -18.87918 -17.35892 -16.97259 -16.64880 -16.51699 -16.12921 -15.85173 -15.49394 -15.45074 -14.87656 -14.48761 -14.25325 -13.92141 -13.54724 -13.52991 -12.60332 -12.60197 -12.40990 -12.38374 -11.29487 -11.09471 -10.80752 -10.77072 -10.65984 -10.42493 -10.40223 -9.94572 -9.73187 -9.67833 -9.67643 -9.36338 -9.33038 -8.46464 -6.12323 -4.17054 0.23696 0.77806 2.34194 2.42956 2.45191 3.25578 3.27598 3.34025 3.38445 3.49577 3.77369 4.36477 4.36983 4.39673 4.54369 4.61278 4.92956 5.01425 5.17662 5.24301 5.25287 5.29225 5.53516 5.64946 5.97021 6.02971 6.05108 6.12219 6.57681 6.83544 7.10587 7.42751 7.51471 7.58725 7.81001 7.87128 8.03770 8.20633 8.88371 9.47527 10.99094 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.049532 B = 0.002468 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.158540 B =11342.320284 C =11881.731255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.076 3.924 11 O -0.350 6.350 12 C 0.453 3.547 13 O -0.513 6.513 14 C 0.123 3.877 15 N -0.701 5.701 16 C 0.575 3.425 17 O -0.531 6.531 18 C 0.080 3.920 19 C -0.110 4.110 20 C -0.082 4.082 21 C -0.150 4.150 22 C 0.100 3.900 23 N -0.456 5.456 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.423 0.577 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.024 -26.555 0.018 27.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.265 6.265 12 C 0.295 3.705 13 O -0.403 6.403 14 C -0.002 4.002 15 N -0.357 5.357 16 C 0.360 3.640 17 O -0.407 6.407 18 C -0.058 4.058 19 C -0.131 4.131 20 C -0.108 4.108 21 C -0.170 4.170 22 C -0.060 4.060 23 N -0.168 5.168 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.263 0.737 32 H 0.168 0.832 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.566 -25.603 0.021 26.698 hybrid contribution 0.865 0.205 -0.013 0.889 sum 8.431 -25.398 0.008 26.761 Atomic orbital electron populations 1.69977 1.06090 1.27040 1.49633 1.24988 0.94935 0.99422 0.94834 0.86458 0.79745 0.82772 0.78251 1.20467 1.21035 1.19723 1.20962 0.93172 0.90051 1.52366 0.92232 1.19192 0.94198 0.88921 0.99034 1.23738 0.96464 0.78287 1.01190 1.86517 1.42174 1.15642 1.82188 1.23247 0.86561 0.87570 0.73113 1.90645 1.15601 1.87970 1.46037 1.20707 0.90892 0.81991 1.06600 1.45601 1.11966 1.04408 1.73698 1.17796 0.87439 0.81956 0.76802 1.90811 1.16862 1.82981 1.50062 1.21043 0.90870 0.92884 1.00976 1.22151 1.02109 0.92037 0.96805 1.21662 0.92663 1.00287 0.96227 1.22430 0.97432 0.98025 0.99153 1.22862 0.99046 0.88830 0.95268 1.67598 1.00448 1.38905 1.09827 0.92665 0.95240 0.95215 0.92049 0.92046 0.86755 0.86759 0.73697 0.83215 0.83915 0.84085 0.81809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.61 5.35 -27.88 -0.15 0.46 16 10 C 0.08 1.64 5.40 37.16 0.20 1.84 16 11 O -0.35 -6.74 10.22 -39.26 -0.40 -7.14 16 12 C 0.45 7.51 8.03 36.00 0.29 7.80 16 13 O -0.51 -9.54 15.42 -18.75 -0.29 -9.82 16 14 C 0.12 1.59 6.27 -5.20 -0.03 1.56 16 15 N -0.70 -9.06 5.52 -62.33 -0.34 -9.41 16 16 C 0.58 7.44 7.81 -12.18 -0.10 7.35 16 17 O -0.53 -7.87 16.32 5.36 0.09 -7.79 16 18 C 0.08 0.88 6.75 -83.01 -0.56 0.32 16 19 C -0.11 -0.94 9.63 -39.05 -0.38 -1.32 16 20 C -0.08 -0.48 10.17 -39.30 -0.40 -0.88 16 21 C -0.15 -0.81 10.11 -39.32 -0.40 -1.20 16 22 C 0.10 0.73 11.18 -17.56 -0.20 0.53 16 23 N -0.46 -4.80 9.54 -9.80 -0.09 -4.89 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 1.32 8.13 -51.93 -0.42 0.89 16 28 H 0.06 1.32 8.13 -51.93 -0.42 0.89 16 29 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.42 5.63 6.77 -40.82 -0.28 5.35 16 32 H 0.15 1.19 7.64 -52.49 -0.40 0.79 16 33 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 34 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 35 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 319.91 15.07 4.82 4.82 Total: -1.00 -33.11 319.91 -6.65 -39.76 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -4.02 Total: 0.64 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -2.13 Total: 3.04 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.30 Total: -39.81 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.60 Total: -24.75 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.11 -6.65 -39.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740330100.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.991 kcal (2) G-P(sol) polarization free energy of solvation -33.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds