Wall clock time and date at job start Tue Mar 31 2020 00:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00193 * 2 1 4 4 H 1.48502 * 109.46839 * 269.99812 * 3 2 1 5 5 H 1.48499 * 109.47231 * 29.99527 * 3 2 1 6 6 H 1.48496 * 109.47211 * 150.00183 * 3 2 1 7 7 C 1.37872 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00084 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00280 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47529 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.47019 * 179.97438 * 10 9 7 12 12 C 1.34231 * 116.99791 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99834 * 0.02562 * 12 11 10 14 14 C 1.50696 * 119.99955 * 179.97438 * 12 11 10 15 15 N 1.46501 * 109.46929 * 180.02562 * 14 12 11 16 16 C 1.34780 * 119.99775 * 180.02562 * 15 14 12 17 17 O 1.21506 * 120.00220 * 0.02562 * 16 15 14 18 18 C 1.48175 * 119.99946 * 180.02562 * 16 15 14 19 19 C 1.39302 * 119.72217 * 179.97438 * 18 16 15 20 20 C 1.38596 * 119.05879 * 179.97438 * 19 18 16 21 21 C 1.38630 * 118.48552 * 0.02562 * 20 19 18 22 22 C 1.38558 * 119.35539 * 0.25409 * 21 20 19 23 23 N 1.31532 * 120.90059 * 359.49177 * 22 21 20 24 24 H 0.97007 * 119.99521 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46999 * 59.99436 * 9 7 2 26 26 H 1.09000 * 109.46787 * 300.00247 * 9 7 2 27 27 H 1.08998 * 109.46600 * 59.99415 * 10 9 7 28 28 H 1.08997 * 109.47019 * 300.00020 * 10 9 7 29 29 H 1.08997 * 109.46979 * 60.00694 * 14 12 11 30 30 H 1.08996 * 109.47518 * 300.00576 * 14 12 11 31 31 H 0.97001 * 120.00408 * 0.02562 * 15 14 12 32 32 H 1.07999 * 120.47505 * 0.02670 * 19 18 16 33 33 H 1.07999 * 120.75338 * 180.02562 * 20 19 18 34 34 H 1.08002 * 120.31909 * 179.97438 * 21 20 19 35 35 H 1.07995 * 119.54967 * 179.74631 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 8 1.5191 -4.9196 0.0011 12 6 2.2501 -6.0454 0.0007 13 8 3.4567 -5.9821 0.0003 14 6 1.5659 -7.3880 0.0019 15 7 2.5748 -8.4502 0.0017 16 6 2.1926 -9.7427 0.0021 17 8 1.0113 -10.0269 0.0021 18 6 3.2131 -10.8170 0.0025 19 6 2.8116 -12.1510 0.0035 20 6 3.7777 -13.1447 0.0033 21 6 5.1122 -12.7695 0.0027 22 6 5.4392 -11.4231 0.0077 23 7 4.5019 -10.5003 0.0029 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6043 0.8905 28 1 2.8718 -3.6045 -0.8894 29 1 0.9422 -7.4788 -0.8875 30 1 0.9440 -7.4782 0.8924 31 1 3.5180 -8.2234 0.0013 32 1 1.7624 -12.4072 0.0035 33 1 3.4971 -14.1877 0.0036 34 1 5.8894 -13.5194 0.0030 35 1 6.4779 -11.1273 0.0114 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740330100.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:30 Heat of formation + Delta-G solvation = -114.312729 kcal Electronic energy + Delta-G solvation = -19807.237089 eV Core-core repulsion = 16383.402770 eV Total energy + Delta-G solvation = -3423.834319 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.91741 -41.38930 -39.97712 -37.95490 -35.82564 -35.46965 -33.58968 -32.59101 -32.35290 -29.68367 -27.01143 -25.45693 -24.41986 -23.20385 -22.26157 -21.83521 -19.85837 -18.82743 -18.16773 -17.92277 -17.70826 -17.51119 -16.71638 -16.59016 -16.43943 -16.41916 -15.66343 -15.42606 -14.87402 -14.66553 -14.38668 -14.17525 -14.03300 -13.85318 -13.13919 -13.04250 -12.91591 -12.62931 -12.59528 -11.98763 -11.62444 -11.58044 -11.52996 -11.40192 -10.96159 -10.61884 -10.58093 -10.51006 -10.16643 -8.27554 -6.40819 -0.39801 0.25978 0.97173 1.24076 1.42264 1.42992 1.54738 1.58906 2.11738 2.39957 2.85047 3.05002 3.07061 3.48500 3.79512 3.97759 4.04615 4.10737 4.12639 4.20407 4.22490 4.24254 4.50203 4.67361 4.77112 4.96593 5.06408 5.16505 5.21637 5.45676 5.46626 5.63651 5.72277 6.05081 6.16556 6.52274 6.71819 6.73149 6.94477 7.29028 8.84986 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.049532 B = 0.002468 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.158540 B =11342.320284 C =11881.731255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.550 4.550 8 H 0.066 0.934 9 C 0.028 3.972 10 C 0.091 3.909 11 O -0.357 6.357 12 C 0.458 3.542 13 O -0.531 6.531 14 C 0.131 3.869 15 N -0.703 5.703 16 C 0.575 3.425 17 O -0.558 6.558 18 C 0.048 3.952 19 C -0.116 4.116 20 C -0.078 4.078 21 C -0.132 4.132 22 C 0.086 3.914 23 N -0.485 5.485 24 H 0.268 0.732 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.421 0.579 32 H 0.149 0.851 33 H 0.178 0.822 34 H 0.181 0.819 35 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.870 -28.173 0.012 29.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.194 4.194 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.587 4.587 8 H 0.084 0.916 9 C -0.009 4.009 10 C 0.018 3.982 11 O -0.273 6.273 12 C 0.302 3.698 13 O -0.421 6.421 14 C 0.007 3.993 15 N -0.358 5.358 16 C 0.362 3.638 17 O -0.436 6.436 18 C -0.089 4.089 19 C -0.138 4.138 20 C -0.104 4.104 21 C -0.152 4.152 22 C -0.073 4.073 23 N -0.198 5.198 24 H 0.077 0.923 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.261 0.739 32 H 0.167 0.833 33 H 0.195 0.805 34 H 0.198 0.802 35 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 9.419 -27.243 0.013 28.825 hybrid contribution 0.346 0.548 -0.011 0.649 sum 9.765 -26.694 0.002 28.424 Atomic orbital electron populations 1.70100 1.07820 1.28280 1.50378 1.25976 0.95853 1.03463 0.94121 0.85313 0.78529 0.77740 0.78659 1.19554 1.20475 1.18683 1.21370 0.93741 0.91160 1.52467 0.91567 1.19010 0.94424 0.90594 0.96863 1.23253 0.95069 0.78470 1.01436 1.86495 1.42339 1.15670 1.82798 1.23836 0.86360 0.87722 0.71927 1.90637 1.16523 1.88120 1.46841 1.20765 0.90732 0.79745 1.08047 1.45637 1.11712 1.04537 1.73931 1.18193 0.87720 0.82141 0.75794 1.90779 1.18006 1.83338 1.51474 1.20837 0.90870 0.92985 1.04223 1.22295 1.02911 0.91762 0.96783 1.22096 0.92328 1.01268 0.94708 1.22877 0.98207 0.97934 0.96136 1.23417 0.99509 0.89594 0.94825 1.67513 1.00663 1.40592 1.10993 0.92342 0.97403 0.97382 0.91756 0.91729 0.85212 0.85216 0.73915 0.83325 0.80492 0.80182 0.79532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.52 13.29 21.45 0.28 -55.23 16 2 C 0.00 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.97 43.54 29.54 68.60 2.03 45.56 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.55 -30.99 9.11 25.60 0.23 -30.75 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 9 C 0.03 1.51 5.35 29.85 0.16 1.67 16 10 C 0.09 3.99 5.40 71.98 0.39 4.38 16 11 O -0.36 -13.89 10.22 -51.43 -0.53 -14.42 16 12 C 0.46 15.17 8.03 71.23 0.57 15.74 16 13 O -0.53 -19.73 15.42 21.95 0.34 -19.39 16 14 C 0.13 3.37 6.27 85.63 0.54 3.91 16 15 N -0.70 -18.32 5.52 -469.40 -2.59 -20.91 16 16 C 0.57 15.11 7.81 86.88 0.68 15.78 16 17 O -0.56 -16.80 16.32 -3.74 -0.06 -16.86 16 18 C 0.05 1.04 6.75 41.91 0.28 1.32 16 19 C -0.12 -1.88 9.63 22.61 0.22 -1.66 16 20 C -0.08 -0.68 10.17 22.45 0.23 -0.46 16 21 C -0.13 -0.94 10.11 22.44 0.23 -0.72 16 22 C 0.09 1.08 11.18 84.81 0.95 2.03 16 23 N -0.49 -9.94 9.54 -184.91 -1.76 -11.71 16 24 H 0.27 14.97 8.31 -92.70 -0.77 14.19 16 25 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.06 2.78 8.13 -2.39 -0.02 2.76 16 28 H 0.06 2.79 8.13 -2.39 -0.02 2.77 16 29 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 30 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.42 11.38 6.77 -92.71 -0.63 10.76 16 32 H 0.15 2.31 7.64 -2.91 -0.02 2.29 16 33 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16 34 H 0.18 -0.12 8.06 -2.91 -0.02 -0.15 16 35 H 0.19 1.26 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -72.64 319.91 3.13 -69.50 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.49 Total: 11.46 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 4.94 Total: 11.99 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -4.07 Total: -87.85 kcal Atomic # 8 Polarization: -50.42 SS G_CDS: -0.25 Total: -50.67 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -72.64 3.13 -69.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740330100.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.808 kcal (2) G-P(sol) polarization free energy of solvation -72.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds