Wall clock time and date at job start Tue Mar 31 2020 00:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00005 * 2 1 4 4 H 1.48505 * 109.47055 * 275.24650 * 3 2 1 5 5 H 1.48502 * 109.47228 * 35.24900 * 3 2 1 6 6 H 1.48506 * 109.47385 * 155.24799 * 3 2 1 7 7 C 1.37883 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99991 * 348.67696 * 7 2 1 9 9 C 1.50697 * 119.99770 * 168.67675 * 7 2 1 10 10 C 1.53001 * 115.55034 * 323.38633 * 9 7 2 11 11 O 1.45206 * 109.46836 * 185.03735 * 10 9 7 12 12 C 1.34763 * 116.99590 * 180.68256 * 11 10 9 13 13 O 1.21530 * 120.00251 * 5.87546 * 12 11 10 14 14 C 1.47254 * 119.99860 * 185.86645 * 12 11 10 15 15 C 1.38290 * 126.46907 * 353.73563 * 14 12 11 16 16 N 1.34230 * 108.38247 * 179.97438 * 15 14 12 17 17 H 0.97001 * 125.37613 * 180.02562 * 16 15 14 18 18 C 1.37789 * 109.23417 * 359.75689 * 16 15 14 19 19 C 1.46824 * 125.83698 * 180.24629 * 18 16 15 20 20 N 1.34768 * 119.99857 * 0.17861 * 19 18 16 21 21 O 1.21680 * 119.99794 * 180.17512 * 19 18 16 22 22 C 1.36326 * 108.32044 * 0.40128 * 18 16 15 23 23 C 1.53004 * 117.49743 * 109.05654 * 9 7 2 24 24 C 1.53002 * 117.49878 * 177.70976 * 9 7 2 25 25 H 0.97001 * 119.99907 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47314 * 65.04436 * 10 9 7 27 27 H 1.08994 * 109.46988 * 305.04059 * 10 9 7 28 28 H 1.07998 * 125.81058 * 359.92528 * 15 14 12 29 29 H 0.96997 * 120.00479 * 0.02562 * 20 19 18 30 30 H 0.97005 * 119.99658 * 179.97438 * 20 19 18 31 31 H 1.08003 * 126.49503 * 179.87989 * 22 18 16 32 32 H 1.09004 * 117.49807 * 215.00807 * 23 9 7 33 33 H 1.09004 * 117.50008 * 0.02562 * 23 9 7 34 34 H 1.08998 * 117.49513 * 359.97438 * 24 9 7 35 35 H 1.09003 * 117.49489 * 144.97201 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3858 2.1104 -1.3943 5 1 1.5065 2.6181 0.8080 6 1 3.5978 1.4107 0.5862 7 6 2.0046 -1.1941 0.0005 8 1 1.4804 -2.1202 0.1846 9 6 3.4895 -1.2069 -0.2557 10 6 3.9905 -0.1911 -1.2844 11 8 5.4092 -0.3963 -1.5160 12 6 6.0121 0.4319 -2.3916 13 8 5.3977 1.3673 -2.8653 14 6 7.4156 0.2035 -2.7742 15 6 8.2727 -0.7369 -2.2325 16 7 9.4611 -0.6305 -2.8475 17 1 10.2421 -1.1738 -2.6581 18 6 9.3944 0.3683 -3.7943 19 6 10.4875 0.7869 -4.6807 20 7 11.6853 0.1733 -4.6095 21 8 10.3119 1.6878 -5.4795 22 6 8.1411 0.9037 -3.7649 23 6 4.4075 -1.5274 0.9257 24 6 4.2064 -2.5570 -0.1889 25 1 -0.4850 0.8401 -0.0004 26 1 3.8262 0.8185 -0.9079 27 1 3.4467 -0.3231 -2.2198 28 1 8.0279 -1.4372 -1.4476 29 1 11.8252 -0.5451 -3.9730 30 1 12.4074 0.4496 -5.1954 31 1 7.7711 1.7073 -4.3845 32 1 5.3683 -1.0144 0.9700 33 1 3.9374 -1.7293 1.8881 34 1 3.6039 -3.4358 0.0408 35 1 5.0345 -2.7217 -0.8783 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744276573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:08 Heat of formation + Delta-G solvation = -41.113764 kcal Electronic energy + Delta-G solvation = -20933.021429 eV Core-core repulsion = 17512.361255 eV Total energy + Delta-G solvation = -3420.660174 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.86453 -39.73951 -39.09596 -37.05852 -35.18969 -34.25495 -32.26563 -31.69555 -29.98558 -27.73145 -25.45760 -23.64432 -23.22656 -21.40012 -20.62328 -19.92520 -19.26215 -19.12604 -17.38796 -17.05674 -16.68081 -16.09023 -15.99071 -15.44786 -15.39351 -14.66017 -14.24251 -14.07446 -13.87315 -13.61341 -13.23603 -12.81209 -12.64349 -12.45578 -11.74027 -11.09515 -10.76080 -10.69543 -10.47023 -10.44544 -10.25620 -10.25068 -9.70363 -9.50414 -9.45729 -9.25238 -8.73328 -8.67602 -8.33621 -6.24504 -4.19663 1.06329 1.56452 2.52471 2.88146 2.91807 3.23406 3.28928 3.36704 3.39172 3.45501 4.30345 4.45764 4.64178 4.73334 4.81661 5.08258 5.33805 5.60188 5.66059 5.73472 5.86269 6.02376 6.09499 6.21456 6.26189 6.35087 6.53393 6.57462 6.72636 6.74152 6.89836 6.98041 7.03960 7.20953 7.62880 7.74895 8.22008 8.41381 8.79988 9.37984 10.87324 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032889 B = 0.004059 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.146691 B = 6896.411232 C = 7505.660809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.078 3.922 3 Si 0.872 3.128 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.258 1.258 7 C -0.485 4.485 8 H 0.086 0.914 9 C 0.006 3.994 10 C 0.088 3.912 11 O -0.351 6.351 12 C 0.527 3.473 13 O -0.512 6.512 14 C -0.215 4.215 15 C 0.108 3.892 16 N -0.528 5.528 17 H 0.421 0.579 18 C -0.077 4.077 19 C 0.597 3.403 20 N -0.857 5.857 21 O -0.527 6.527 22 C -0.034 4.034 23 C -0.200 4.200 24 C -0.178 4.178 25 H 0.269 0.731 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.195 0.805 29 H 0.395 0.605 30 H 0.409 0.591 31 H 0.162 0.838 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.106 -3.899 -4.614 24.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.126 4.126 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.218 1.218 6 H -0.184 1.184 7 C -0.521 4.521 8 H 0.103 0.897 9 C 0.005 3.995 10 C 0.016 3.984 11 O -0.268 6.268 12 C 0.372 3.628 13 O -0.402 6.402 14 C -0.222 4.222 15 C -0.034 4.034 16 N -0.124 5.124 17 H 0.259 0.741 18 C -0.187 4.187 19 C 0.384 3.616 20 N -0.420 5.420 21 O -0.402 6.402 22 C -0.060 4.060 23 C -0.238 4.238 24 C -0.215 4.215 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.211 0.789 29 H 0.223 0.777 30 H 0.240 0.760 31 H 0.179 0.821 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 23.556 -2.935 -5.223 24.305 hybrid contribution 1.006 0.413 0.261 1.118 sum 24.561 -2.522 -4.962 25.184 Atomic orbital electron populations 1.69894 1.06285 1.27527 1.48231 1.25003 0.94697 0.99032 0.93849 0.87159 0.79769 0.83798 0.79047 1.19732 1.21791 1.18436 1.20296 0.87454 0.95324 1.49052 0.89655 1.19369 0.93965 0.92639 0.93556 1.23526 0.74357 1.00230 1.00254 1.86473 1.27781 1.55365 1.57185 1.20128 0.86213 0.80047 0.76447 1.90850 1.66115 1.30343 1.52875 1.18881 0.92773 1.04696 1.05886 1.22753 0.83735 0.99169 0.97767 1.41720 1.12681 1.28894 1.29110 0.74135 1.19893 0.97677 0.99981 1.01128 1.16985 0.81358 0.81465 0.81837 1.43687 1.14272 1.40512 1.43573 1.90921 1.81872 1.29762 1.37639 1.21144 0.90140 0.98329 0.96354 1.23100 1.00968 1.04941 0.94762 1.22728 1.02708 0.93692 1.02422 0.92118 0.91684 0.90626 0.78860 0.77714 0.75985 0.82070 0.91006 0.89789 0.90062 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.50 13.96 55.43 0.77 -25.73 16 2 C 0.08 2.24 5.43 -17.82 -0.10 2.15 16 3 Si 0.87 22.22 24.22 -169.99 -4.12 18.10 16 4 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.26 -6.37 6.39 56.52 0.36 -6.01 16 7 C -0.48 -13.44 9.57 -34.44 -0.33 -13.77 16 8 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 9 C 0.01 0.14 1.82 -155.66 -0.28 -0.15 16 10 C 0.09 2.04 4.22 37.16 0.16 2.20 16 11 O -0.35 -6.86 8.33 -40.66 -0.34 -7.20 16 12 C 0.53 9.91 7.94 34.39 0.27 10.19 16 13 O -0.51 -11.45 16.69 -19.29 -0.32 -11.77 16 14 C -0.21 -3.02 6.13 -105.03 -0.64 -3.67 16 15 C 0.11 1.00 11.76 -16.48 -0.19 0.80 16 16 N -0.53 -3.44 5.91 -9.29 -0.05 -3.49 16 17 H 0.42 0.80 8.13 -40.82 -0.33 0.47 16 18 C -0.08 -0.78 6.99 -82.41 -0.58 -1.35 16 19 C 0.60 5.92 8.06 -12.79 -0.10 5.82 16 20 N -0.86 -4.00 8.87 30.29 0.27 -3.73 16 21 O -0.53 -7.59 17.69 5.21 0.09 -7.50 16 22 C -0.03 -0.46 10.38 -39.09 -0.41 -0.86 16 23 C -0.20 -4.13 9.66 -26.70 -0.26 -4.39 16 24 C -0.18 -3.54 9.63 -26.70 -0.26 -3.80 16 25 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.07 1.62 2.54 -51.93 -0.13 1.49 16 27 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 28 H 0.19 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.40 0.49 7.91 -40.82 -0.32 0.17 16 30 H 0.41 1.46 8.93 -40.82 -0.36 1.10 16 31 H 0.16 2.31 8.06 -52.48 -0.42 1.89 16 32 H 0.07 1.37 7.82 -51.93 -0.41 0.96 16 33 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 34 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.08 1.39 7.50 -51.93 -0.39 1.00 16 LS Contribution 307.59 15.07 4.64 4.64 Total: -1.00 -36.48 307.59 -5.44 -41.92 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -3.66 Total: 1.60 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -2.72 Total: -6.84 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.99 Total: -32.95 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.57 Total: -26.46 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.12 Total: 18.10 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -36.48 -5.44 -41.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.804 kcal (2) G-P(sol) polarization free energy of solvation -36.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds