Wall clock time and date at job start Tue Mar 31 2020 00:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00005 * 2 1 4 4 H 1.48505 * 109.47055 * 275.24650 * 3 2 1 5 5 H 1.48502 * 109.47228 * 35.24900 * 3 2 1 6 6 H 1.48506 * 109.47385 * 155.24799 * 3 2 1 7 7 C 1.37883 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99991 * 348.67696 * 7 2 1 9 9 C 1.50697 * 119.99770 * 168.67675 * 7 2 1 10 10 C 1.53001 * 115.55034 * 323.38633 * 9 7 2 11 11 O 1.45206 * 109.46836 * 185.03735 * 10 9 7 12 12 C 1.34763 * 116.99590 * 180.68256 * 11 10 9 13 13 O 1.21530 * 120.00251 * 5.87546 * 12 11 10 14 14 C 1.47254 * 119.99860 * 185.86645 * 12 11 10 15 15 C 1.38290 * 126.46907 * 353.73563 * 14 12 11 16 16 N 1.34230 * 108.38247 * 179.97438 * 15 14 12 17 17 H 0.97001 * 125.37613 * 180.02562 * 16 15 14 18 18 C 1.37789 * 109.23417 * 359.75689 * 16 15 14 19 19 C 1.46824 * 125.83698 * 180.24629 * 18 16 15 20 20 N 1.34768 * 119.99857 * 0.17861 * 19 18 16 21 21 O 1.21680 * 119.99794 * 180.17512 * 19 18 16 22 22 C 1.36326 * 108.32044 * 0.40128 * 18 16 15 23 23 C 1.53004 * 117.49743 * 109.05654 * 9 7 2 24 24 C 1.53002 * 117.49878 * 177.70976 * 9 7 2 25 25 H 0.97001 * 119.99907 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47314 * 65.04436 * 10 9 7 27 27 H 1.08994 * 109.46988 * 305.04059 * 10 9 7 28 28 H 1.07998 * 125.81058 * 359.92528 * 15 14 12 29 29 H 0.96997 * 120.00479 * 0.02562 * 20 19 18 30 30 H 0.97005 * 119.99658 * 179.97438 * 20 19 18 31 31 H 1.08003 * 126.49503 * 179.87989 * 22 18 16 32 32 H 1.09004 * 117.49807 * 215.00807 * 23 9 7 33 33 H 1.09004 * 117.50008 * 0.02562 * 23 9 7 34 34 H 1.08998 * 117.49513 * 359.97438 * 24 9 7 35 35 H 1.09003 * 117.49489 * 144.97201 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3858 2.1104 -1.3943 5 1 1.5065 2.6181 0.8080 6 1 3.5978 1.4107 0.5862 7 6 2.0046 -1.1941 0.0005 8 1 1.4804 -2.1202 0.1846 9 6 3.4895 -1.2069 -0.2557 10 6 3.9905 -0.1911 -1.2844 11 8 5.4092 -0.3963 -1.5160 12 6 6.0121 0.4319 -2.3916 13 8 5.3977 1.3673 -2.8653 14 6 7.4156 0.2035 -2.7742 15 6 8.2727 -0.7369 -2.2325 16 7 9.4611 -0.6305 -2.8475 17 1 10.2421 -1.1738 -2.6581 18 6 9.3944 0.3683 -3.7943 19 6 10.4875 0.7869 -4.6807 20 7 11.6853 0.1733 -4.6095 21 8 10.3119 1.6878 -5.4795 22 6 8.1411 0.9037 -3.7649 23 6 4.4075 -1.5274 0.9257 24 6 4.2064 -2.5570 -0.1889 25 1 -0.4850 0.8401 -0.0004 26 1 3.8262 0.8185 -0.9079 27 1 3.4467 -0.3231 -2.2198 28 1 8.0279 -1.4372 -1.4476 29 1 11.8252 -0.5451 -3.9730 30 1 12.4074 0.4496 -5.1954 31 1 7.7711 1.7073 -4.3845 32 1 5.3683 -1.0144 0.9700 33 1 3.9374 -1.7293 1.8881 34 1 3.6039 -3.4358 0.0408 35 1 5.0345 -2.7217 -0.8783 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744276573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:07 Heat of formation + Delta-G solvation = -70.507846 kcal Electronic energy + Delta-G solvation = -20934.296052 eV Core-core repulsion = 17512.361255 eV Total energy + Delta-G solvation = -3421.934797 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.72646 -41.20224 -39.96765 -38.74981 -36.81945 -34.94173 -34.40010 -32.60554 -30.90965 -29.45452 -27.37338 -24.81453 -24.16846 -23.02237 -21.46511 -21.08684 -21.06365 -20.04358 -18.75805 -18.42142 -17.92948 -17.58066 -16.89132 -16.80778 -16.55971 -16.27377 -15.54853 -15.24422 -14.96186 -14.83378 -14.62986 -14.46715 -14.33152 -13.67236 -13.39920 -13.04618 -12.68682 -12.36251 -12.01492 -11.93896 -11.60753 -11.51453 -11.41864 -11.14692 -10.87018 -10.62642 -10.38074 -10.23106 -9.56912 -8.44377 -6.39928 0.28293 0.41421 1.23656 1.28892 1.31898 1.59064 1.87953 2.00545 2.19098 2.27477 2.46740 2.78234 3.40568 3.66045 3.86355 3.99645 4.00882 4.09012 4.14306 4.21894 4.48138 4.60839 4.77723 4.82164 5.01897 5.07756 5.22425 5.28997 5.37375 5.49574 5.61632 5.62669 5.76139 6.19848 6.21677 6.39142 6.60853 6.77148 7.14786 7.19398 8.71878 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032889 B = 0.004059 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.146691 B = 6896.411232 C = 7505.660809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.031 3.969 3 Si 0.926 3.074 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.243 1.243 7 C -0.484 4.484 8 H 0.054 0.946 9 C -0.038 4.038 10 C 0.098 3.902 11 O -0.336 6.336 12 C 0.525 3.475 13 O -0.562 6.562 14 C -0.256 4.256 15 C 0.152 3.848 16 N -0.492 5.492 17 H 0.449 0.551 18 C -0.062 4.062 19 C 0.597 3.403 20 N -0.825 5.825 21 O -0.580 6.580 22 C -0.067 4.067 23 C -0.180 4.180 24 C -0.150 4.150 25 H 0.270 0.730 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.234 0.766 29 H 0.416 0.584 30 H 0.419 0.581 31 H 0.134 0.866 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.649 -5.881 -3.673 29.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.168 4.168 3 Si 0.755 3.245 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.167 1.167 7 C -0.521 4.521 8 H 0.072 0.928 9 C -0.039 4.039 10 C 0.025 3.975 11 O -0.252 6.252 12 C 0.373 3.627 13 O -0.455 6.455 14 C -0.263 4.263 15 C 0.007 3.993 16 N -0.090 5.090 17 H 0.293 0.707 18 C -0.173 4.173 19 C 0.383 3.617 20 N -0.390 5.390 21 O -0.459 6.459 22 C -0.092 4.092 23 C -0.217 4.217 24 C -0.187 4.187 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.250 0.750 29 H 0.248 0.752 30 H 0.252 0.748 31 H 0.152 0.848 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 28.219 -4.995 -4.248 28.971 hybrid contribution -0.256 0.887 -0.078 0.926 sum 27.963 -4.108 -4.326 28.592 Atomic orbital electron populations 1.69994 1.07701 1.28267 1.50938 1.25617 0.95178 1.01848 0.94199 0.86297 0.79451 0.80583 0.78213 1.21303 1.21445 1.16737 1.20513 0.90089 0.93868 1.47667 0.92790 1.19231 0.92203 0.96150 0.96315 1.23027 0.76431 0.98904 0.99121 1.86438 1.25540 1.55452 1.57765 1.20942 0.87663 0.78923 0.75161 1.90826 1.67594 1.32443 1.54642 1.18633 0.91031 1.08188 1.08489 1.23128 0.82849 0.96884 0.96476 1.41610 1.13081 1.27405 1.26864 0.70656 1.19691 0.96447 0.99946 1.01233 1.16990 0.82456 0.81122 0.81162 1.43420 1.12553 1.39739 1.43292 1.90910 1.82894 1.32305 1.39826 1.21051 0.92007 0.99006 0.97169 1.23095 1.00598 1.04264 0.93758 1.22830 1.02210 0.91799 1.01876 0.92032 0.93643 0.92603 0.74971 0.75209 0.74811 0.84773 0.88425 0.90077 0.90014 0.87033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.91 13.96 21.45 0.30 -57.61 16 2 C 0.03 1.84 5.43 84.66 0.46 2.30 16 3 Si 0.93 47.25 24.22 68.60 1.66 48.92 16 4 H -0.29 -15.11 7.11 99.48 0.71 -14.41 16 5 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.24 -11.58 6.39 99.48 0.64 -10.95 16 7 C -0.48 -27.35 9.57 25.60 0.25 -27.10 16 8 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 9 C -0.04 -1.75 1.82 -52.93 -0.10 -1.85 16 10 C 0.10 4.50 4.22 71.98 0.30 4.81 16 11 O -0.34 -12.40 8.33 -56.74 -0.47 -12.87 16 12 C 0.53 19.47 7.94 70.19 0.56 20.03 16 13 O -0.56 -26.03 16.69 19.74 0.33 -25.70 16 14 C -0.26 -6.73 6.13 -20.13 -0.12 -6.85 16 15 C 0.15 2.02 11.76 84.34 0.99 3.01 16 16 N -0.49 -3.78 5.91 -183.31 -1.08 -4.86 16 17 H 0.45 -1.41 8.13 -92.71 -0.75 -2.16 16 18 C -0.06 -1.09 6.99 40.01 0.28 -0.81 16 19 C 0.60 10.46 8.06 86.49 0.70 11.16 16 20 N -0.83 -4.44 8.87 -176.30 -1.56 -6.01 16 21 O -0.58 -16.53 17.69 -4.29 -0.08 -16.60 16 22 C -0.07 -1.77 10.38 22.59 0.23 -1.54 16 23 C -0.18 -6.80 9.66 30.62 0.30 -6.51 16 24 C -0.15 -5.45 9.63 30.62 0.29 -5.16 16 25 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 26 H 0.05 2.27 2.54 -2.39 -0.01 2.26 16 27 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 28 H 0.23 1.37 8.06 -2.91 -0.02 1.35 16 29 H 0.42 -1.22 7.91 -92.71 -0.73 -1.96 16 30 H 0.42 1.47 8.93 -92.70 -0.83 0.65 16 31 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 32 H 0.10 3.22 7.82 -2.38 -0.02 3.20 16 33 H 0.08 3.13 8.14 -2.38 -0.02 3.11 16 34 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.11 3.33 7.50 -2.39 -0.02 3.32 16 Total: -1.00 -86.30 307.59 2.03 -84.27 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: -1.21 Total: -1.03 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 4.14 Total: -8.51 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -2.35 Total: -68.47 kcal Atomic # 8 Polarization: -54.96 SS G_CDS: -0.22 Total: -55.18 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.66 Total: 48.92 kcal Total: -86.30 2.03 -84.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.760 kcal (2) G-P(sol) polarization free energy of solvation -86.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds