Wall clock time and date at job start Tue Mar 31 2020 01:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38640 * 120.47453 * 2 1 4 4 C 1.38576 * 118.48941 * 180.02562 * 3 2 1 5 5 C 1.38620 * 119.36116 * 359.97438 * 4 3 2 6 6 N 1.31475 * 120.90604 * 359.72414 * 5 4 3 7 7 C 1.32786 * 121.63865 * 0.56411 * 6 5 4 8 8 C 1.48062 * 119.72595 * 179.71109 * 7 6 5 9 9 O 1.21425 * 120.00277 * 173.94733 * 8 7 6 10 10 O 1.34683 * 120.00364 * 354.22230 * 8 7 6 11 11 C 1.45191 * 117.00449 * 179.72499 * 10 8 7 12 12 C 1.50698 * 109.47236 * 179.97438 * 11 10 8 13 13 O 1.21281 * 120.00027 * 0.02562 * 12 11 10 14 14 N 1.34785 * 119.99866 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99698 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.46955 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00046 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00067 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99841 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00193 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47155 * 59.99059 * 20 18 16 22 22 H 1.48496 * 109.47136 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46874 * 299.99608 * 20 18 16 24 24 H 1.09002 * 109.47220 * 263.26540 * 1 2 3 25 25 H 1.09005 * 109.47040 * 23.25938 * 1 2 3 26 26 H 1.08997 * 109.47323 * 143.26180 * 1 2 3 27 27 H 1.08001 * 120.74780 * 0.04173 * 3 2 1 28 28 H 1.08001 * 120.31787 * 179.97438 * 4 3 2 29 29 H 1.07999 * 119.54729 * 180.02562 * 5 4 3 30 30 H 1.09003 * 109.47091 * 300.00047 * 11 10 8 31 31 H 1.09004 * 109.47294 * 59.99962 * 11 10 8 32 32 H 0.96994 * 120.00104 * 359.97438 * 14 12 11 33 33 H 1.09003 * 109.47190 * 299.99984 * 15 14 12 34 34 H 1.09004 * 109.47106 * 59.99844 * 15 14 12 35 35 H 0.97008 * 120.00213 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2101 1.1949 0.0000 4 6 3.5950 1.1469 -0.0005 5 6 4.2324 -0.0841 -0.0005 6 7 3.5412 -1.2025 0.0054 7 6 2.2134 -1.2007 0.0005 8 6 1.4774 -2.4855 0.0011 9 8 0.2679 -2.4923 0.1075 10 8 2.1501 -3.6469 -0.1109 11 6 1.3643 -4.8678 -0.0968 12 6 2.2807 -6.0565 -0.2321 13 8 3.4781 -5.8910 -0.3302 14 7 1.7695 -7.3036 -0.2431 15 6 2.6604 -8.4592 -0.3741 16 6 1.8448 -9.7264 -0.3596 17 1 0.7704 -9.6760 -0.2621 18 6 2.4703 -10.9501 -0.4698 19 7 3.7787 -11.0115 -0.5879 20 14 1.4593 -12.5208 -0.4526 21 1 0.5003 -12.5046 -1.5862 22 1 2.3624 -13.6922 -0.5852 23 1 0.7115 -12.6141 0.8271 24 1 -0.3634 -0.1205 1.0206 25 1 -0.3633 0.9442 -0.4058 26 1 -0.3634 -0.8235 -0.6147 27 1 1.6901 2.1415 0.0007 28 1 4.1721 2.0597 -0.0010 29 1 5.3116 -0.1250 -0.0005 30 1 0.8161 -4.9362 0.8428 31 1 0.6598 -4.8561 -0.9285 32 1 0.8119 -7.4360 -0.1635 33 1 3.2083 -8.3909 -1.3139 34 1 3.3652 -8.4707 0.4574 35 1 4.2188 -11.8725 -0.6658 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750517015.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:42 Heat of formation + Delta-G solvation = -82.637181 kcal Electronic energy + Delta-G solvation = -20242.764617 eV Core-core repulsion = 16820.303853 eV Total energy + Delta-G solvation = -3422.460764 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.16881 -39.85399 -38.60022 -36.50632 -34.21052 -33.85343 -32.52739 -32.36630 -29.32337 -27.87417 -26.65698 -25.02766 -22.86383 -22.42699 -21.41494 -19.89200 -18.48671 -17.58832 -16.93514 -16.73391 -16.44401 -15.94244 -15.48794 -15.08392 -14.99671 -14.57307 -14.14145 -14.09042 -13.50690 -13.11366 -13.04031 -12.94372 -12.66364 -12.56579 -12.25661 -11.95625 -11.72659 -11.01293 -10.89002 -10.68632 -10.53396 -10.32578 -10.19678 -9.80003 -9.43040 -9.38905 -9.11934 -8.75298 -7.94681 -6.17149 -4.24633 0.20926 0.84238 2.21654 2.30756 3.23151 3.25771 3.30470 3.31997 3.47234 3.76843 4.10207 4.34138 4.35387 4.43396 4.53858 4.60668 4.95582 5.09372 5.18687 5.19684 5.26116 5.30247 5.38168 5.42020 5.62396 5.74478 5.87553 6.13433 6.37004 7.25369 7.32489 7.37962 7.49385 7.62564 7.72296 7.94746 8.53839 8.74374 9.00924 9.41589 10.92967 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.044009 B = 0.002846 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.085405 B = 9834.424237 C =10441.584129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.068 4.068 3 C -0.090 4.090 4 C -0.137 4.137 5 C 0.090 3.910 6 N -0.423 5.423 7 C 0.088 3.912 8 C 0.521 3.479 9 O -0.498 6.498 10 O -0.303 6.303 11 C 0.046 3.954 12 C 0.499 3.501 13 O -0.529 6.529 14 N -0.707 5.707 15 C 0.252 3.748 16 C -0.545 4.545 17 H 0.064 0.936 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.098 0.902 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.167 0.833 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.392 0.608 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.757 25.239 1.360 25.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.071 4.071 3 C -0.116 4.116 4 C -0.157 4.157 5 C -0.070 4.070 6 N -0.133 5.133 7 C -0.049 4.049 8 C 0.364 3.636 9 O -0.386 6.386 10 O -0.216 6.216 11 C -0.032 4.032 12 C 0.282 3.718 13 O -0.406 6.406 14 N -0.358 5.358 15 C 0.131 3.869 16 C -0.584 4.584 17 H 0.082 0.918 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.732 3.268 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 H 0.100 0.900 25 H 0.083 0.917 26 H 0.116 0.884 27 H 0.163 0.837 28 H 0.161 0.839 29 H 0.184 0.816 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.225 0.775 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.652 24.299 1.300 24.774 hybrid contribution -1.371 -0.187 0.069 1.385 sum -6.022 24.112 1.369 24.890 Atomic orbital electron populations 1.21116 0.88754 1.03702 1.04188 1.20923 0.98455 0.92035 0.95641 1.21532 0.94170 0.97889 0.98001 1.22505 0.95299 1.00059 0.97843 1.22951 1.00929 0.86937 0.96233 1.67736 1.06625 1.31686 1.07300 1.19883 0.90143 0.90366 1.04470 1.20836 0.85319 0.84304 0.73114 1.90795 1.14276 1.87566 1.46008 1.86748 1.39578 1.13363 1.81939 1.22948 0.93780 0.81886 1.04557 1.19853 0.88893 0.84075 0.79007 1.90731 1.15253 1.85546 1.49031 1.46349 1.11661 1.05687 1.72098 1.19166 0.89470 0.80385 0.97834 1.21175 0.93677 0.90523 1.52991 0.91825 1.24952 0.95043 0.99353 0.94645 1.69967 1.08116 1.25997 1.48125 0.86449 0.79725 0.81888 0.78692 1.20045 1.21057 1.20040 0.89987 0.91659 0.88378 0.83747 0.83860 0.81580 0.88364 0.88385 0.77478 0.95267 0.95262 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 8.74 36.00 0.31 -0.73 16 2 C -0.07 -0.68 5.93 -104.08 -0.62 -1.30 16 3 C -0.09 -0.65 9.83 -39.31 -0.39 -1.03 16 4 C -0.14 -0.92 10.11 -39.32 -0.40 -1.32 16 5 C 0.09 0.85 11.18 -17.56 -0.20 0.66 16 6 N -0.42 -5.86 10.13 -9.81 -0.10 -5.96 16 7 C 0.09 1.17 6.75 -83.03 -0.56 0.61 16 8 C 0.52 7.90 7.89 34.76 0.27 8.18 16 9 O -0.50 -7.31 13.10 -19.21 -0.25 -7.56 16 10 O -0.30 -5.35 9.58 -47.13 -0.45 -5.80 16 11 C 0.05 0.73 5.95 36.00 0.21 0.95 16 12 C 0.50 10.39 7.91 -10.98 -0.09 10.30 16 13 O -0.53 -13.52 16.50 -14.10 -0.23 -13.75 16 14 N -0.71 -14.94 5.55 -61.47 -0.34 -15.28 16 15 C 0.25 6.69 5.43 -5.19 -0.03 6.66 16 16 C -0.55 -14.76 9.28 -34.44 -0.32 -15.08 16 17 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 19 N -0.88 -26.12 13.29 55.43 0.74 -25.38 16 20 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.39 8.05 -51.93 -0.42 -0.03 16 26 H 0.10 1.02 5.86 -51.93 -0.30 0.72 16 27 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 28 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 29 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.39 6.91 8.32 -40.82 -0.34 6.57 16 33 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 316.46 15.07 4.77 4.77 Total: -1.00 -35.15 316.46 -6.76 -41.91 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -3.98 Total: 1.65 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: -1.89 Total: 9.58 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.30 Total: -46.62 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.94 Total: -27.10 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.15 -6.76 -41.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750517015.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.730 kcal (2) G-P(sol) polarization free energy of solvation -35.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds