Wall clock time and date at job start Tue Mar 31 2020 01:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38640 * 120.47453 * 2 1 4 4 C 1.38576 * 118.48941 * 180.02562 * 3 2 1 5 5 C 1.38620 * 119.36116 * 359.97438 * 4 3 2 6 6 N 1.31475 * 120.90604 * 359.72414 * 5 4 3 7 7 C 1.32786 * 121.63865 * 0.56411 * 6 5 4 8 8 C 1.48062 * 119.72595 * 179.71109 * 7 6 5 9 9 O 1.21425 * 120.00277 * 173.94733 * 8 7 6 10 10 O 1.34683 * 120.00364 * 354.22230 * 8 7 6 11 11 C 1.45191 * 117.00449 * 179.72499 * 10 8 7 12 12 C 1.50698 * 109.47236 * 179.97438 * 11 10 8 13 13 O 1.21281 * 120.00027 * 0.02562 * 12 11 10 14 14 N 1.34785 * 119.99866 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99698 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.46955 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00046 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00067 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99841 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00193 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47155 * 59.99059 * 20 18 16 22 22 H 1.48496 * 109.47136 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46874 * 299.99608 * 20 18 16 24 24 H 1.09002 * 109.47220 * 263.26540 * 1 2 3 25 25 H 1.09005 * 109.47040 * 23.25938 * 1 2 3 26 26 H 1.08997 * 109.47323 * 143.26180 * 1 2 3 27 27 H 1.08001 * 120.74780 * 0.04173 * 3 2 1 28 28 H 1.08001 * 120.31787 * 179.97438 * 4 3 2 29 29 H 1.07999 * 119.54729 * 180.02562 * 5 4 3 30 30 H 1.09003 * 109.47091 * 300.00047 * 11 10 8 31 31 H 1.09004 * 109.47294 * 59.99962 * 11 10 8 32 32 H 0.96994 * 120.00104 * 359.97438 * 14 12 11 33 33 H 1.09003 * 109.47190 * 299.99984 * 15 14 12 34 34 H 1.09004 * 109.47106 * 59.99844 * 15 14 12 35 35 H 0.97008 * 120.00213 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2101 1.1949 0.0000 4 6 3.5950 1.1469 -0.0005 5 6 4.2324 -0.0841 -0.0005 6 7 3.5412 -1.2025 0.0054 7 6 2.2134 -1.2007 0.0005 8 6 1.4774 -2.4855 0.0011 9 8 0.2679 -2.4923 0.1075 10 8 2.1501 -3.6469 -0.1109 11 6 1.3643 -4.8678 -0.0968 12 6 2.2807 -6.0565 -0.2321 13 8 3.4781 -5.8910 -0.3302 14 7 1.7695 -7.3036 -0.2431 15 6 2.6604 -8.4592 -0.3741 16 6 1.8448 -9.7264 -0.3596 17 1 0.7704 -9.6760 -0.2621 18 6 2.4703 -10.9501 -0.4698 19 7 3.7787 -11.0115 -0.5879 20 14 1.4593 -12.5208 -0.4526 21 1 0.5003 -12.5046 -1.5862 22 1 2.3624 -13.6922 -0.5852 23 1 0.7115 -12.6141 0.8271 24 1 -0.3634 -0.1205 1.0206 25 1 -0.3633 0.9442 -0.4058 26 1 -0.3634 -0.8235 -0.6147 27 1 1.6901 2.1415 0.0007 28 1 4.1721 2.0597 -0.0010 29 1 5.3116 -0.1250 -0.0005 30 1 0.8161 -4.9362 0.8428 31 1 0.6598 -4.8561 -0.9285 32 1 0.8119 -7.4360 -0.1635 33 1 3.2083 -8.3909 -1.3139 34 1 3.3652 -8.4707 0.4574 35 1 4.2188 -11.8725 -0.6658 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750517015.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:42 Heat of formation + Delta-G solvation = -108.008504 kcal Electronic energy + Delta-G solvation = -20243.864800 eV Core-core repulsion = 16820.303853 eV Total energy + Delta-G solvation = -3423.560947 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.12899 -40.95553 -40.18946 -37.72697 -36.20215 -34.58744 -34.42966 -33.22351 -30.88308 -28.94264 -28.19582 -25.93566 -24.61335 -23.38194 -22.41583 -21.67274 -19.59785 -19.09985 -18.24030 -17.93939 -17.44355 -17.40961 -16.89356 -16.46819 -16.36256 -16.06066 -15.30546 -15.23139 -14.65065 -14.36577 -14.09327 -14.06817 -13.80959 -13.77730 -13.63518 -13.41561 -12.99896 -12.95988 -12.68417 -12.24519 -11.94369 -11.53819 -11.49912 -10.94900 -10.84347 -10.81373 -10.53984 -10.12407 -9.94763 -8.29854 -6.47037 -0.57187 0.19635 1.14851 1.24525 1.43948 1.47786 1.53590 1.56241 2.31131 2.49782 2.71706 3.05077 3.13813 3.61673 3.69094 3.76910 3.87946 3.98210 4.00622 4.02626 4.41245 4.50809 4.74619 4.75518 4.96508 5.05365 5.07729 5.13861 5.20235 5.35301 5.40542 5.61853 5.63626 5.80870 6.35245 6.61523 6.76038 6.85879 7.19555 7.34953 8.82257 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.044009 B = 0.002846 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.085405 B = 9834.424237 C =10441.584129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.068 4.068 3 C -0.083 4.083 4 C -0.114 4.114 5 C 0.075 3.925 6 N -0.476 5.476 7 C 0.046 3.954 8 C 0.517 3.483 9 O -0.500 6.500 10 O -0.335 6.335 11 C 0.058 3.942 12 C 0.498 3.502 13 O -0.583 6.583 14 N -0.697 5.697 15 C 0.267 3.733 16 C -0.558 4.558 17 H 0.087 0.913 18 C 0.003 3.997 19 N -0.931 5.931 20 Si 0.987 3.013 21 H -0.261 1.261 22 H -0.286 1.286 23 H -0.261 1.261 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.187 0.813 28 H 0.189 0.811 29 H 0.185 0.815 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.413 0.587 33 H -0.009 1.009 34 H -0.009 1.009 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.976 27.452 1.565 28.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.071 4.071 3 C -0.109 4.109 4 C -0.133 4.133 5 C -0.086 4.086 6 N -0.187 5.187 7 C -0.088 4.088 8 C 0.361 3.639 9 O -0.389 6.389 10 O -0.249 6.249 11 C -0.019 4.019 12 C 0.284 3.716 13 O -0.464 6.464 14 N -0.349 5.349 15 C 0.144 3.856 16 C -0.596 4.596 17 H 0.105 0.895 18 C -0.196 4.196 19 N -0.569 5.569 20 Si 0.810 3.190 21 H -0.186 1.186 22 H -0.211 1.211 23 H -0.186 1.186 24 H 0.100 0.900 25 H 0.116 0.884 26 H 0.094 0.906 27 H 0.204 0.796 28 H 0.206 0.794 29 H 0.202 0.798 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.250 0.750 33 H 0.009 0.991 34 H 0.009 0.991 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.945 26.539 1.512 27.474 hybrid contribution -0.594 -0.692 0.004 0.913 sum -7.539 25.846 1.516 26.966 Atomic orbital electron populations 1.21100 0.87941 1.04542 1.03874 1.21194 0.99150 0.91897 0.94866 1.22058 0.94467 0.98242 0.96113 1.22973 0.95536 1.00396 0.94444 1.23457 1.01904 0.87228 0.96033 1.67598 1.07372 1.34352 1.09360 1.19886 0.90521 0.90321 1.08053 1.21329 0.85610 0.84185 0.72736 1.90774 1.14169 1.87576 1.46406 1.86735 1.41034 1.14393 1.82747 1.22830 0.92188 0.79647 1.07239 1.20693 0.88842 0.85076 0.76989 1.90702 1.18042 1.86406 1.51216 1.46017 1.12095 1.04798 1.71981 1.18629 0.89713 0.82866 0.94358 1.21581 0.94791 0.90540 1.52639 0.89482 1.26087 0.96172 1.03581 0.93785 1.70137 1.10426 1.27119 1.49264 0.85174 0.77901 0.76423 0.79519 1.18597 1.21134 1.18598 0.90041 0.88440 0.90563 0.79583 0.79412 0.79822 0.85491 0.85406 0.75031 0.99086 0.99102 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 8.74 71.23 0.62 -1.19 16 2 C -0.07 -1.26 5.93 -19.51 -0.12 -1.37 16 3 C -0.08 -0.88 9.83 22.45 0.22 -0.66 16 4 C -0.11 -1.12 10.11 22.44 0.23 -0.89 16 5 C 0.07 1.33 11.18 84.84 0.95 2.28 16 6 N -0.48 -13.48 10.13 -184.95 -1.87 -15.35 16 7 C 0.05 1.26 6.75 41.87 0.28 1.54 16 8 C 0.52 16.06 7.89 70.43 0.56 16.61 16 9 O -0.50 -14.65 13.10 20.08 0.26 -14.39 16 10 O -0.33 -12.22 9.58 -49.54 -0.47 -12.70 16 11 C 0.06 1.83 5.95 71.24 0.42 2.26 16 12 C 0.50 21.45 7.91 87.66 0.69 22.14 16 13 O -0.58 -31.64 16.50 15.77 0.26 -31.38 16 14 N -0.70 -30.07 5.55 -466.77 -2.59 -32.66 16 15 C 0.27 14.86 5.43 85.63 0.46 15.32 16 16 C -0.56 -30.43 9.28 25.60 0.24 -30.20 16 17 H 0.09 4.24 7.60 -2.91 -0.02 4.22 16 18 C 0.00 0.19 5.46 84.65 0.46 0.66 16 19 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 20 Si 0.99 42.43 29.54 68.60 2.03 44.45 16 21 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 22 H -0.29 -12.22 7.11 99.48 0.71 -11.52 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 24 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.10 0.83 8.05 -2.38 -0.02 0.81 16 26 H 0.08 1.53 5.86 -2.39 -0.01 1.52 16 27 H 0.19 0.39 8.06 -2.91 -0.02 0.37 16 28 H 0.19 0.15 8.06 -2.91 -0.02 0.13 16 29 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.13 3.30 8.14 -2.39 -0.02 3.28 16 31 H 0.13 3.29 8.14 -2.38 -0.02 3.27 16 32 H 0.41 14.24 8.32 -92.71 -0.77 13.47 16 33 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 35 H 0.27 15.32 8.31 -92.70 -0.77 14.54 16 Total: -1.00 -82.53 316.46 3.28 -79.25 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.36 Total: 12.61 kcal Atomic # 6 Polarization: 21.48 SS G_CDS: 5.02 Total: 26.51 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -4.18 Total: -104.36 kcal Atomic # 8 Polarization: -58.51 SS G_CDS: 0.05 Total: -58.46 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Total: -82.53 3.28 -79.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750517015.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.754 kcal (2) G-P(sol) polarization free energy of solvation -82.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds