Wall clock time and date at job start Tue Mar 31 2020 01:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38619 * 120.32403 * 2 1 4 4 C 1.38595 * 118.49192 * 180.02562 * 3 2 1 5 5 C 1.39339 * 119.05442 * 359.97438 * 4 3 2 6 6 C 1.48072 * 119.72718 * 180.02562 * 5 4 3 7 7 O 1.21429 * 119.99654 * 359.97438 * 6 5 4 8 8 O 1.34674 * 120.00259 * 180.02562 * 6 5 4 9 9 C 1.45206 * 117.00006 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.46791 * 179.97438 * 9 8 6 11 11 O 1.21275 * 120.00327 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99709 * 180.02562 * 10 9 8 13 13 C 1.46493 * 119.99977 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.47364 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99333 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00119 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00081 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99639 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46987 * 60.00936 * 18 16 14 20 20 H 1.48507 * 109.46760 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47530 * 300.00349 * 18 16 14 22 22 N 1.32750 * 120.55048 * 359.97438 * 5 4 3 23 23 C 1.31504 * 121.64014 * 0.04255 * 22 5 4 24 24 H 1.08998 * 109.47108 * 90.00123 * 1 2 3 25 25 H 1.09003 * 109.47026 * 210.00192 * 1 2 3 26 26 H 1.09002 * 109.46890 * 330.00186 * 1 2 3 27 27 H 1.07998 * 120.75565 * 359.97438 * 3 2 1 28 28 H 1.08005 * 120.47199 * 179.72629 * 4 3 2 29 29 H 1.08995 * 109.47362 * 300.00001 * 9 8 6 30 30 H 1.09004 * 109.46702 * 60.00538 * 9 8 6 31 31 H 0.96998 * 120.00047 * 0.02562 * 12 10 9 32 32 H 1.09000 * 109.47435 * 300.00282 * 13 12 10 33 33 H 1.09000 * 109.47520 * 60.00109 * 13 12 10 34 34 H 0.96998 * 120.00202 * 179.97438 * 17 16 14 35 35 H 1.07997 * 119.54520 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1965 0.0000 4 6 3.5921 1.1522 -0.0005 5 6 4.2295 -0.0868 -0.0005 6 6 5.7088 -0.1515 -0.0005 7 8 6.3613 0.8726 -0.0010 8 8 6.3306 -1.3461 -0.0010 9 6 7.7826 -1.3335 -0.0016 10 6 8.2972 -2.7500 -0.0015 11 8 7.5172 -3.6786 -0.0014 12 7 9.6244 -2.9848 -0.0014 13 6 10.1247 -4.3616 -0.0018 14 6 11.6317 -4.3486 -0.0023 15 1 12.1635 -3.4086 -0.0018 16 6 12.3314 -5.5367 -0.0022 17 7 11.6837 -6.6812 -0.0023 18 14 14.1993 -5.5204 -0.0035 19 1 14.6890 -4.8157 1.2085 20 1 14.7064 -6.9162 -0.0038 21 1 14.6874 -4.8166 -1.2165 22 7 3.5216 -1.2098 0.0005 23 6 2.2066 -1.1963 0.0007 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6846 2.1418 -0.0004 28 1 4.1693 2.0651 -0.0050 29 1 8.1412 -0.8164 -0.8915 30 1 8.1418 -0.8168 0.8885 31 1 10.2483 -2.2421 -0.0010 32 1 9.7657 -4.8790 0.8879 33 1 9.7660 -4.8783 -0.8920 34 1 12.1759 -7.5170 -0.0026 35 1 1.6645 -2.1304 0.0012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753486162.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:46 Heat of formation + Delta-G solvation = -88.793068 kcal Electronic energy + Delta-G solvation = -19930.966980 eV Core-core repulsion = 16508.239277 eV Total energy + Delta-G solvation = -3422.727704 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.06051 -39.93855 -38.60446 -36.38415 -34.21420 -34.14969 -32.38563 -32.36230 -29.50238 -28.17730 -26.56714 -24.26237 -23.61797 -22.49529 -21.24560 -19.89303 -18.52912 -17.65906 -16.96435 -16.65533 -16.40011 -15.68722 -15.49287 -15.09098 -14.94350 -14.77010 -14.36898 -14.14936 -13.58451 -13.29749 -13.08320 -12.94108 -12.77817 -12.49938 -12.14338 -11.95511 -11.72930 -11.02426 -10.95678 -10.88772 -10.66914 -10.32314 -10.26207 -9.84861 -9.42741 -9.40657 -9.11896 -8.75065 -7.94450 -6.16876 -4.24331 0.17054 0.84781 2.19600 2.30197 3.23388 3.26067 3.30698 3.32238 3.46873 3.74835 4.09289 4.30024 4.34615 4.40553 4.46023 4.60606 4.81110 5.08065 5.08912 5.14472 5.18937 5.26552 5.34208 5.38273 5.46706 5.55832 5.72665 6.15197 6.23913 7.25200 7.31547 7.37370 7.49619 7.62655 7.71428 7.95007 8.54103 8.74625 9.01137 9.41848 10.93239 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.049095 B = 0.002639 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.180583 B =10608.082379 C =11152.514471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.109 4.109 3 C -0.089 4.089 4 C -0.101 4.101 5 C 0.087 3.913 6 C 0.522 3.478 7 O -0.503 6.503 8 O -0.303 6.303 9 C 0.045 3.955 10 C 0.499 3.501 11 O -0.529 6.529 12 N -0.707 5.707 13 C 0.251 3.749 14 C -0.545 4.545 15 H 0.064 0.936 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.906 3.094 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 N -0.423 5.423 23 C 0.098 3.902 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.145 0.855 28 H 0.152 0.848 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.393 0.607 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.267 0.733 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.297 17.344 -0.024 26.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.111 4.111 3 C -0.114 4.114 4 C -0.121 4.121 5 C -0.049 4.049 6 C 0.365 3.635 7 O -0.391 6.391 8 O -0.216 6.216 9 C -0.032 4.032 10 C 0.282 3.718 11 O -0.406 6.406 12 N -0.358 5.358 13 C 0.131 3.869 14 C -0.584 4.584 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.733 3.267 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 N -0.133 5.133 23 C -0.063 4.063 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.163 0.837 28 H 0.169 0.831 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.225 0.775 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -20.084 15.910 -0.022 25.622 hybrid contribution 1.077 1.164 -0.005 1.586 sum -19.007 17.074 -0.027 25.549 Atomic orbital electron populations 1.20818 0.89516 1.03714 1.03156 1.21328 0.98156 0.94237 0.97340 1.21497 0.93244 0.98738 0.97939 1.22100 0.95187 0.98375 0.96421 1.20013 0.90913 0.90108 1.03867 1.20840 0.87895 0.81891 0.72880 1.90841 1.66408 1.35660 1.46225 1.86746 1.21460 1.30985 1.82368 1.22962 0.77548 0.98054 1.04661 1.19843 0.83875 0.89172 0.78900 1.90728 1.55839 1.44846 1.49140 1.46349 1.04594 1.12171 1.72691 1.19166 0.93746 0.75919 0.98039 1.21175 0.90485 0.93128 1.53571 0.91820 1.24954 0.99252 0.95159 0.94648 1.69963 1.36087 0.97521 1.48621 0.86446 0.84366 0.77217 0.78703 1.20043 1.21064 1.20047 1.67744 1.08472 1.29769 1.07281 1.22886 0.89098 0.98035 0.96289 0.90213 0.90544 0.90883 0.83691 0.83069 0.88347 0.88356 0.77469 0.95255 0.95259 0.92327 0.81632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.43 10.03 36.01 0.36 -0.07 16 2 C -0.11 -0.77 5.91 -104.35 -0.62 -1.39 16 3 C -0.09 -0.62 9.85 -39.31 -0.39 -1.01 16 4 C -0.10 -0.97 9.63 -39.04 -0.38 -1.35 16 5 C 0.09 1.16 6.75 -83.03 -0.56 0.60 16 6 C 0.52 8.07 7.95 34.77 0.28 8.35 16 7 O -0.50 -7.88 16.11 -19.21 -0.31 -8.19 16 8 O -0.30 -5.39 9.57 -47.10 -0.45 -5.84 16 9 C 0.05 0.73 5.95 36.01 0.21 0.95 16 10 C 0.50 10.46 7.91 -10.98 -0.09 10.37 16 11 O -0.53 -13.54 16.50 -14.10 -0.23 -13.77 16 12 N -0.71 -15.03 5.55 -61.47 -0.34 -15.37 16 13 C 0.25 6.70 5.43 -5.20 -0.03 6.68 16 14 C -0.55 -14.80 9.28 -34.44 -0.32 -15.12 16 15 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 17 N -0.88 -26.14 13.29 55.43 0.74 -25.40 16 18 Si 0.91 20.88 29.54 -169.99 -5.02 15.86 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 22 N -0.42 -5.82 10.12 -9.81 -0.10 -5.92 16 23 C 0.10 0.94 10.86 -17.56 -0.19 0.75 16 24 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.08 0.23 8.09 -51.93 -0.42 -0.19 16 26 H 0.07 0.19 8.09 -51.93 -0.42 -0.23 16 27 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 28 H 0.15 1.26 7.64 -52.48 -0.40 0.86 16 29 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.39 6.97 8.32 -40.82 -0.34 6.63 16 32 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 321.87 15.07 4.85 4.85 Total: -1.00 -35.55 321.87 -6.75 -42.30 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -4.07 Total: 1.04 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: -1.81 Total: 10.44 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.30 Total: -46.69 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.99 Total: -27.80 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.55 -6.75 -42.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753486162.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.492 kcal (2) G-P(sol) polarization free energy of solvation -35.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds