Wall clock time and date at job start Tue Mar 31 2020 01:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38619 * 120.32403 * 2 1 4 4 C 1.38595 * 118.49192 * 180.02562 * 3 2 1 5 5 C 1.39339 * 119.05442 * 359.97438 * 4 3 2 6 6 C 1.48072 * 119.72718 * 180.02562 * 5 4 3 7 7 O 1.21429 * 119.99654 * 359.97438 * 6 5 4 8 8 O 1.34674 * 120.00259 * 180.02562 * 6 5 4 9 9 C 1.45206 * 117.00006 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.46791 * 179.97438 * 9 8 6 11 11 O 1.21275 * 120.00327 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99709 * 180.02562 * 10 9 8 13 13 C 1.46493 * 119.99977 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.47364 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99333 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00119 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00081 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99639 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46987 * 60.00936 * 18 16 14 20 20 H 1.48507 * 109.46760 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47530 * 300.00349 * 18 16 14 22 22 N 1.32750 * 120.55048 * 359.97438 * 5 4 3 23 23 C 1.31504 * 121.64014 * 0.04255 * 22 5 4 24 24 H 1.08998 * 109.47108 * 90.00123 * 1 2 3 25 25 H 1.09003 * 109.47026 * 210.00192 * 1 2 3 26 26 H 1.09002 * 109.46890 * 330.00186 * 1 2 3 27 27 H 1.07998 * 120.75565 * 359.97438 * 3 2 1 28 28 H 1.08005 * 120.47199 * 179.72629 * 4 3 2 29 29 H 1.08995 * 109.47362 * 300.00001 * 9 8 6 30 30 H 1.09004 * 109.46702 * 60.00538 * 9 8 6 31 31 H 0.96998 * 120.00047 * 0.02562 * 12 10 9 32 32 H 1.09000 * 109.47435 * 300.00282 * 13 12 10 33 33 H 1.09000 * 109.47520 * 60.00109 * 13 12 10 34 34 H 0.96998 * 120.00202 * 179.97438 * 17 16 14 35 35 H 1.07997 * 119.54520 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1965 0.0000 4 6 3.5921 1.1522 -0.0005 5 6 4.2295 -0.0868 -0.0005 6 6 5.7088 -0.1515 -0.0005 7 8 6.3613 0.8726 -0.0010 8 8 6.3306 -1.3461 -0.0010 9 6 7.7826 -1.3335 -0.0016 10 6 8.2972 -2.7500 -0.0015 11 8 7.5172 -3.6786 -0.0014 12 7 9.6244 -2.9848 -0.0014 13 6 10.1247 -4.3616 -0.0018 14 6 11.6317 -4.3486 -0.0023 15 1 12.1635 -3.4086 -0.0018 16 6 12.3314 -5.5367 -0.0022 17 7 11.6837 -6.6812 -0.0023 18 14 14.1993 -5.5204 -0.0035 19 1 14.6890 -4.8157 1.2085 20 1 14.7064 -6.9162 -0.0038 21 1 14.6874 -4.8166 -1.2165 22 7 3.5216 -1.2098 0.0005 23 6 2.2066 -1.1963 0.0007 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6846 2.1418 -0.0004 28 1 4.1693 2.0651 -0.0050 29 1 8.1412 -0.8164 -0.8915 30 1 8.1418 -0.8168 0.8885 31 1 10.2483 -2.2421 -0.0010 32 1 9.7657 -4.8790 0.8879 33 1 9.7660 -4.8783 -0.8920 34 1 12.1759 -7.5170 -0.0026 35 1 1.6645 -2.1304 0.0012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753486162.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:45 Heat of formation + Delta-G solvation = -114.236853 kcal Electronic energy + Delta-G solvation = -19932.070306 eV Core-core repulsion = 16508.239277 eV Total energy + Delta-G solvation = -3423.831029 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.05213 -41.01156 -40.24608 -37.66023 -36.20260 -34.79754 -34.42913 -33.08776 -30.98349 -29.21078 -28.17043 -25.11008 -24.74905 -24.06935 -22.20908 -21.67932 -19.66978 -19.12595 -18.34700 -17.91794 -17.46515 -17.36887 -16.88529 -16.32089 -16.21742 -16.10598 -15.46203 -15.31876 -14.68318 -14.49966 -14.16345 -14.09192 -13.81321 -13.76716 -13.48526 -13.28392 -12.96548 -12.71078 -12.68473 -12.24491 -12.10456 -11.97056 -11.53353 -10.95477 -10.94127 -10.81394 -10.59942 -10.08669 -9.95005 -8.29785 -6.46939 -0.62845 0.18784 1.12145 1.19719 1.43974 1.47853 1.53117 1.56260 2.30512 2.48704 2.68526 3.05072 3.09118 3.61455 3.73622 3.77102 3.85348 3.91825 3.97915 4.01495 4.16734 4.60767 4.77869 4.85710 4.88096 5.03900 5.09639 5.17610 5.20213 5.23857 5.40322 5.58469 5.61929 5.80865 6.30051 6.61465 6.75303 6.81781 7.19405 7.34618 8.82278 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.049095 B = 0.002639 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.180583 B =10608.082379 C =11152.514471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.082 4.082 4 C -0.094 4.094 5 C 0.047 3.953 6 C 0.522 3.478 7 O -0.512 6.512 8 O -0.332 6.332 9 C 0.056 3.944 10 C 0.499 3.501 11 O -0.583 6.583 12 N -0.697 5.697 13 C 0.266 3.734 14 C -0.558 4.558 15 H 0.087 0.913 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.987 3.013 19 H -0.262 1.262 20 H -0.286 1.286 21 H -0.262 1.262 22 N -0.471 5.471 23 C 0.081 3.919 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.187 0.813 28 H 0.163 0.837 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.413 0.587 32 H -0.009 1.009 33 H -0.009 1.009 34 H 0.269 0.731 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.883 20.265 -0.022 29.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.107 4.107 4 C -0.114 4.114 5 C -0.087 4.087 6 C 0.366 3.634 7 O -0.401 6.401 8 O -0.246 6.246 9 C -0.020 4.020 10 C 0.285 3.715 11 O -0.463 6.463 12 N -0.349 5.349 13 C 0.144 3.856 14 C -0.596 4.596 15 H 0.105 0.895 16 C -0.197 4.197 17 N -0.569 5.569 18 Si 0.810 3.190 19 H -0.186 1.186 20 H -0.211 1.211 21 H -0.186 1.186 22 N -0.182 5.182 23 C -0.080 4.080 24 H 0.112 0.888 25 H 0.103 0.897 26 H 0.111 0.889 27 H 0.204 0.796 28 H 0.180 0.820 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.250 0.750 32 H 0.009 0.991 33 H 0.009 0.991 34 H 0.078 0.922 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -20.660 18.904 -0.021 28.003 hybrid contribution 1.049 0.272 -0.007 1.083 sum -19.611 19.176 -0.028 27.428 Atomic orbital electron populations 1.20939 0.86576 1.05154 1.04349 1.21732 1.00034 0.93220 0.94231 1.21995 0.92108 1.00441 0.96162 1.22311 0.96549 0.97217 0.95330 1.19975 0.89664 0.91527 1.07580 1.21320 0.88949 0.80943 0.72206 1.90807 1.66856 1.35397 1.47030 1.86735 1.21928 1.32922 1.83054 1.22860 0.77607 0.94140 1.07433 1.20662 0.83070 0.90932 0.76870 1.90700 1.57084 1.47208 1.51295 1.46019 1.05510 1.10804 1.72585 1.18633 0.94262 0.78164 0.94532 1.21579 0.90456 0.94300 1.53221 0.89490 1.26090 1.05226 0.94557 0.93793 1.70132 1.38569 0.98459 1.49735 0.85169 0.76983 0.77297 0.79526 1.18606 1.21136 1.18619 1.67595 1.10568 1.30903 1.09132 1.23314 0.88106 1.00102 0.96466 0.88848 0.89739 0.88893 0.79564 0.81960 0.85410 0.85421 0.75028 0.99059 0.99062 0.92177 0.80099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.41 10.03 71.24 0.71 0.30 16 2 C -0.09 -1.04 5.91 -19.69 -0.12 -1.16 16 3 C -0.08 -0.89 9.85 22.45 0.22 -0.67 16 4 C -0.09 -1.67 9.63 22.62 0.22 -1.46 16 5 C 0.05 1.27 6.75 41.88 0.28 1.55 16 6 C 0.52 16.35 7.95 70.43 0.56 16.91 16 7 O -0.51 -15.76 16.11 20.07 0.32 -15.44 16 8 O -0.33 -12.15 9.57 -49.45 -0.47 -12.63 16 9 C 0.06 1.80 5.95 71.24 0.42 2.23 16 10 C 0.50 21.50 7.91 87.66 0.69 22.20 16 11 O -0.58 -31.55 16.50 15.78 0.26 -31.29 16 12 N -0.70 -30.15 5.55 -466.79 -2.59 -32.74 16 13 C 0.27 14.85 5.43 85.64 0.46 15.32 16 14 C -0.56 -30.46 9.28 25.60 0.24 -30.22 16 15 H 0.09 4.24 7.60 -2.91 -0.02 4.22 16 16 C 0.00 0.17 5.46 84.66 0.46 0.63 16 17 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 18 Si 0.99 42.48 29.54 68.60 2.03 44.50 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 22 N -0.47 -13.35 10.12 -184.95 -1.87 -15.23 16 23 C 0.08 1.52 10.86 84.83 0.92 2.44 16 24 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 25 H 0.08 0.23 8.09 -2.39 -0.02 0.21 16 26 H 0.09 0.05 8.09 -2.39 -0.02 0.03 16 27 H 0.19 0.47 8.06 -2.91 -0.02 0.45 16 28 H 0.16 2.42 7.64 -2.91 -0.02 2.39 16 29 H 0.13 3.34 8.14 -2.39 -0.02 3.32 16 30 H 0.13 3.34 8.14 -2.39 -0.02 3.32 16 31 H 0.41 14.30 8.32 -92.71 -0.77 13.53 16 32 H -0.01 -0.54 8.14 -2.39 -0.02 -0.55 16 33 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -82.30 321.87 3.39 -78.91 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.35 Total: 12.15 kcal Atomic # 6 Polarization: 22.98 SS G_CDS: 5.08 Total: 28.06 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -4.18 Total: -104.26 kcal Atomic # 8 Polarization: -59.46 SS G_CDS: 0.11 Total: -59.35 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -82.30 3.39 -78.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753486162.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.328 kcal (2) G-P(sol) polarization free energy of solvation -82.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds