Wall clock time and date at job start Mon Mar 30 2020 23:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00322 * 2 1 4 4 H 1.48498 * 109.46914 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47220 * 299.99854 * 3 2 1 6 6 H 1.48498 * 109.46970 * 60.00057 * 3 2 1 7 7 C 1.37887 * 119.99688 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99943 * 176.42442 * 7 2 1 9 9 C 1.50693 * 119.99905 * 356.69960 * 7 2 1 10 10 C 1.52997 * 115.55320 * 275.03968 * 9 7 2 11 11 O 1.45198 * 109.46818 * 297.34999 * 10 9 7 12 12 C 1.34226 * 117.00128 * 184.19396 * 11 10 9 13 13 O 1.20830 * 119.99904 * 5.23676 * 12 11 10 14 14 C 1.50706 * 120.00368 * 185.24468 * 12 11 10 15 15 H 1.08999 * 109.46582 * 351.65299 * 14 12 11 16 16 F 1.39896 * 109.47128 * 231.66014 * 14 12 11 17 17 C 1.50695 * 109.47476 * 111.65424 * 14 12 11 18 18 C 1.38232 * 119.99809 * 64.72850 * 17 14 12 19 19 C 1.38239 * 119.99783 * 179.78814 * 18 17 14 20 20 C 1.38227 * 120.00257 * 0.44164 * 19 18 17 21 21 C 1.38236 * 119.99822 * 359.81105 * 20 19 18 22 22 C 1.38233 * 120.00092 * 359.97438 * 21 20 19 23 23 C 1.53004 * 117.49711 * 129.36401 * 9 7 2 24 24 C 1.53005 * 117.49713 * 60.70853 * 9 7 2 25 25 H 0.97004 * 119.99637 * 4.99984 * 1 2 3 26 26 H 1.08994 * 109.47466 * 57.35138 * 10 9 7 27 27 H 1.09006 * 109.47297 * 177.35764 * 10 9 7 28 28 H 1.08002 * 120.00265 * 359.97438 * 18 17 14 29 29 H 1.08003 * 120.00046 * 180.27093 * 19 18 17 30 30 H 1.08002 * 120.00508 * 179.83498 * 20 19 18 31 31 H 1.08003 * 120.00428 * 179.97438 * 21 20 19 32 32 H 1.08003 * 120.00349 * 180.02562 * 22 21 20 33 33 H 1.09000 * 117.49977 * 0.02562 * 23 9 7 34 34 H 1.09000 * 117.49695 * 145.02182 * 23 9 7 35 35 H 1.09005 * 117.49826 * 214.97286 * 24 9 7 36 36 H 1.09001 * 117.50097 * 359.97364 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0829 -1.1952 -0.0578 9 6 1.2528 -2.4980 0.0763 10 6 0.8872 -2.9682 1.4856 11 8 2.1009 -3.2092 2.2453 12 6 1.9563 -3.7121 3.4814 13 8 0.8611 -4.0319 3.8792 14 6 3.1599 -3.8779 4.3731 15 1 4.0661 -3.6801 3.8006 16 9 3.1971 -5.1859 4.8679 17 6 3.0705 -2.9081 5.5231 18 6 2.0523 -3.0275 6.4503 19 6 1.9728 -2.1406 7.5076 20 6 2.9062 -1.1287 7.6327 21 6 3.9214 -1.0062 6.7025 22 6 4.0035 -1.8957 5.6476 23 6 1.5929 -3.5708 -0.9604 24 6 0.2668 -2.8115 -1.0510 25 1 -0.4850 0.8369 -0.0732 26 1 0.2940 -2.2005 1.9823 27 1 0.3090 -3.8901 1.4225 28 1 1.3205 -3.8156 6.3504 29 1 1.1798 -2.2365 8.2346 30 1 2.8427 -0.4342 8.4573 31 1 4.6506 -0.2154 6.7999 32 1 4.7969 -1.8003 4.9211 33 1 2.3607 -3.3335 -1.6968 34 1 1.5559 -4.6115 -0.6384 35 1 -0.6420 -3.3532 -0.7886 36 1 0.1616 -2.0745 -1.8471 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769302532.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:21 Heat of formation + Delta-G solvation = -84.363257 kcal Electronic energy + Delta-G solvation = -21257.976598 eV Core-core repulsion = 17815.521024 eV Total energy + Delta-G solvation = -3442.455574 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.96436 -39.97791 -39.01107 -36.84521 -35.38368 -32.58004 -31.98957 -30.98190 -28.21509 -26.43101 -25.21117 -22.74026 -22.29218 -21.19704 -20.40366 -19.33074 -17.68603 -17.40300 -16.81951 -16.22917 -15.94684 -15.57033 -15.21675 -14.63383 -14.43211 -14.30533 -14.00669 -13.46398 -13.43366 -12.85995 -12.77177 -12.32488 -12.22339 -11.90328 -11.63392 -11.21462 -11.03591 -11.01382 -10.93538 -10.55949 -10.31978 -10.10139 -9.99645 -9.56263 -8.99331 -8.97250 -8.94491 -8.50542 -8.25011 -6.09450 -4.16863 1.09223 1.33954 2.42728 2.89967 3.24409 3.33125 3.36801 3.67808 4.23974 4.35180 4.62677 4.83568 4.92650 4.95563 5.05660 5.15262 5.18694 5.36015 5.40141 5.54791 5.78991 5.89499 5.97059 6.16767 6.24480 6.32541 6.41468 6.41649 6.44389 6.57666 6.69851 6.86278 7.00091 7.04462 7.28744 7.45593 7.82804 8.12725 8.34518 8.85346 9.49332 10.98606 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015697 B = 0.005837 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.313417 B = 4796.147677 C = 5922.248640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.068 3.932 3 Si 0.892 3.108 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.487 4.487 8 H 0.064 0.936 9 C 0.032 3.968 10 C 0.115 3.885 11 O -0.326 6.326 12 C 0.437 3.563 13 O -0.500 6.500 14 C 0.154 3.846 15 H 0.125 0.875 16 F -0.181 7.181 17 C -0.130 4.130 18 C -0.080 4.080 19 C -0.125 4.125 20 C -0.106 4.106 21 C -0.126 4.126 22 C -0.086 4.086 23 C -0.206 4.206 24 C -0.138 4.138 25 H 0.261 0.739 26 H 0.074 0.926 27 H 0.044 0.956 28 H 0.133 0.867 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.460 -3.705 11.531 13.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.525 4.525 8 H 0.082 0.918 9 C 0.031 3.969 10 C 0.042 3.958 11 O -0.241 6.241 12 C 0.278 3.722 13 O -0.389 6.389 14 C 0.117 3.883 15 H 0.143 0.857 16 F -0.161 7.161 17 C -0.131 4.131 18 C -0.098 4.098 19 C -0.143 4.143 20 C -0.124 4.124 21 C -0.144 4.144 22 C -0.104 4.104 23 C -0.243 4.243 24 C -0.176 4.176 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.062 0.938 28 H 0.151 0.849 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.946 -3.701 11.661 13.602 hybrid contribution 0.078 0.848 -0.023 0.852 sum 6.024 -2.852 11.637 13.411 Atomic orbital electron populations 1.69991 1.05894 1.26844 1.49191 1.25025 0.94887 0.99100 0.94494 0.86533 0.80313 0.83581 0.77643 1.19518 1.20961 1.20936 1.20422 0.92799 0.88132 1.51122 0.91788 1.18802 0.99811 0.93998 0.84286 1.23005 0.82004 0.98346 0.92409 1.86536 1.40312 1.72691 1.24565 1.23619 0.90364 0.75496 0.82739 1.90629 1.27626 1.46189 1.74425 1.19692 0.98308 0.78492 0.91859 0.85742 1.92906 1.97393 1.36984 1.88823 1.19715 0.98472 0.98158 0.96740 1.21175 0.96521 0.98834 0.93269 1.21152 0.99394 0.95476 0.98320 1.21270 0.94577 0.97649 0.98862 1.21127 0.99047 0.99301 0.94886 1.21065 0.97960 0.93526 0.97825 1.23029 1.00118 0.95605 1.05563 1.22523 0.91041 1.01347 1.02650 0.92912 0.90759 0.93774 0.84931 0.85622 0.85801 0.85450 0.84977 0.89982 0.91568 0.91719 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.56 12.68 55.43 0.70 -23.86 16 2 C 0.07 1.83 5.43 -17.82 -0.10 1.73 16 3 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.49 -13.03 8.73 -34.44 -0.30 -13.33 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.03 0.77 1.69 -155.66 -0.26 0.51 16 10 C 0.12 2.70 5.38 37.16 0.20 2.90 16 11 O -0.33 -7.06 10.11 -39.25 -0.40 -7.46 16 12 C 0.44 8.47 7.00 36.01 0.25 8.73 16 13 O -0.50 -10.69 15.64 -18.75 -0.29 -10.98 16 14 C 0.15 2.34 4.02 -29.03 -0.12 2.23 16 15 H 0.12 1.55 7.88 -51.93 -0.41 1.14 16 16 F -0.18 -2.82 16.91 2.25 0.04 -2.78 16 17 C -0.13 -1.89 5.04 -104.63 -0.53 -2.42 16 18 C -0.08 -1.15 9.01 -39.58 -0.36 -1.51 16 19 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 20 C -0.11 -1.15 10.05 -39.59 -0.40 -1.55 16 21 C -0.13 -1.41 10.05 -39.58 -0.40 -1.81 16 22 C -0.09 -1.08 9.67 -39.58 -0.38 -1.46 16 23 C -0.21 -4.44 9.96 -26.69 -0.27 -4.71 16 24 C -0.14 -3.18 9.19 -26.69 -0.25 -3.43 16 25 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 26 H 0.07 1.90 8.14 -51.93 -0.42 1.48 16 27 H 0.04 0.98 7.95 -51.93 -0.41 0.57 16 28 H 0.13 1.98 7.44 -52.49 -0.39 1.59 16 29 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 31 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 32 H 0.13 1.38 7.95 -52.48 -0.42 0.96 16 33 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.09 2.22 8.14 -51.93 -0.42 1.80 16 LS Contribution 323.70 15.07 4.88 4.88 Total: -1.00 -30.00 323.70 -7.95 -37.95 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.56 Total: 2.56 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -3.30 Total: -16.03 kcal Atomic # 7 Polarization: -24.56 SS G_CDS: 0.70 Total: -23.86 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.69 Total: -18.43 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.04 Total: -2.78 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.00 -7.95 -37.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769302532.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.414 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds