Wall clock time and date at job start Mon Mar 30 2020 23:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00322 * 2 1 4 4 H 1.48498 * 109.46914 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47220 * 299.99854 * 3 2 1 6 6 H 1.48498 * 109.46970 * 60.00057 * 3 2 1 7 7 C 1.37887 * 119.99688 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99943 * 176.42442 * 7 2 1 9 9 C 1.50693 * 119.99905 * 356.69960 * 7 2 1 10 10 C 1.52997 * 115.55320 * 275.03968 * 9 7 2 11 11 O 1.45198 * 109.46818 * 297.34999 * 10 9 7 12 12 C 1.34226 * 117.00128 * 184.19396 * 11 10 9 13 13 O 1.20830 * 119.99904 * 5.23676 * 12 11 10 14 14 C 1.50706 * 120.00368 * 185.24468 * 12 11 10 15 15 H 1.08999 * 109.46582 * 351.65299 * 14 12 11 16 16 F 1.39896 * 109.47128 * 231.66014 * 14 12 11 17 17 C 1.50695 * 109.47476 * 111.65424 * 14 12 11 18 18 C 1.38232 * 119.99809 * 64.72850 * 17 14 12 19 19 C 1.38239 * 119.99783 * 179.78814 * 18 17 14 20 20 C 1.38227 * 120.00257 * 0.44164 * 19 18 17 21 21 C 1.38236 * 119.99822 * 359.81105 * 20 19 18 22 22 C 1.38233 * 120.00092 * 359.97438 * 21 20 19 23 23 C 1.53004 * 117.49711 * 129.36401 * 9 7 2 24 24 C 1.53005 * 117.49713 * 60.70853 * 9 7 2 25 25 H 0.97004 * 119.99637 * 4.99984 * 1 2 3 26 26 H 1.08994 * 109.47466 * 57.35138 * 10 9 7 27 27 H 1.09006 * 109.47297 * 177.35764 * 10 9 7 28 28 H 1.08002 * 120.00265 * 359.97438 * 18 17 14 29 29 H 1.08003 * 120.00046 * 180.27093 * 19 18 17 30 30 H 1.08002 * 120.00508 * 179.83498 * 20 19 18 31 31 H 1.08003 * 120.00428 * 179.97438 * 21 20 19 32 32 H 1.08003 * 120.00349 * 180.02562 * 22 21 20 33 33 H 1.09000 * 117.49977 * 0.02562 * 23 9 7 34 34 H 1.09000 * 117.49695 * 145.02182 * 23 9 7 35 35 H 1.09005 * 117.49826 * 214.97286 * 24 9 7 36 36 H 1.09001 * 117.50097 * 359.97364 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0829 -1.1952 -0.0578 9 6 1.2528 -2.4980 0.0763 10 6 0.8872 -2.9682 1.4856 11 8 2.1009 -3.2092 2.2453 12 6 1.9563 -3.7121 3.4814 13 8 0.8611 -4.0319 3.8792 14 6 3.1599 -3.8779 4.3731 15 1 4.0661 -3.6801 3.8006 16 9 3.1971 -5.1859 4.8679 17 6 3.0705 -2.9081 5.5231 18 6 2.0523 -3.0275 6.4503 19 6 1.9728 -2.1406 7.5076 20 6 2.9062 -1.1287 7.6327 21 6 3.9214 -1.0062 6.7025 22 6 4.0035 -1.8957 5.6476 23 6 1.5929 -3.5708 -0.9604 24 6 0.2668 -2.8115 -1.0510 25 1 -0.4850 0.8369 -0.0732 26 1 0.2940 -2.2005 1.9823 27 1 0.3090 -3.8901 1.4225 28 1 1.3205 -3.8156 6.3504 29 1 1.1798 -2.2365 8.2346 30 1 2.8427 -0.4342 8.4573 31 1 4.6506 -0.2154 6.7999 32 1 4.7969 -1.8003 4.9211 33 1 2.3607 -3.3335 -1.6968 34 1 1.5559 -4.6115 -0.6384 35 1 -0.6420 -3.3532 -0.7886 36 1 0.1616 -2.0745 -1.8471 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769302532.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:20 Heat of formation + Delta-G solvation = -98.398332 kcal Electronic energy + Delta-G solvation = -21258.585205 eV Core-core repulsion = 17815.521024 eV Total energy + Delta-G solvation = -3443.064181 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.19869 -41.54035 -40.03853 -38.62779 -37.11234 -34.02256 -33.63650 -31.90617 -29.63825 -28.07433 -27.13189 -23.71955 -23.47106 -22.94802 -21.76449 -21.23505 -19.18352 -18.65021 -18.37791 -17.77321 -17.25033 -16.97588 -16.70818 -16.41016 -15.76389 -15.47046 -15.30793 -15.13562 -14.50539 -14.34798 -14.04141 -13.73143 -13.66589 -13.56596 -13.13471 -12.91811 -12.86960 -12.37245 -12.19546 -12.10098 -12.00607 -11.79924 -11.66592 -11.34821 -10.89169 -10.48688 -10.12933 -9.94323 -9.92273 -8.12633 -6.25869 0.09199 0.40312 0.91658 1.39960 1.42369 1.44310 1.55013 2.42189 2.71547 3.12516 3.14578 3.26302 3.57734 3.57980 3.80965 4.06831 4.07466 4.11774 4.23405 4.32119 4.39861 4.51038 4.60569 4.61774 4.76321 4.88196 4.95821 5.05939 5.16091 5.31663 5.42634 5.43859 5.49890 5.51423 5.61679 5.75456 5.97035 6.33142 6.52898 6.79978 7.43212 8.95182 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015697 B = 0.005837 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.313417 B = 4796.147677 C = 5922.248640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.022 3.978 3 Si 0.952 3.048 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.499 4.499 8 H 0.059 0.941 9 C -0.001 4.001 10 C 0.127 3.873 11 O -0.333 6.333 12 C 0.434 3.566 13 O -0.526 6.526 14 C 0.163 3.837 15 H 0.156 0.844 16 F -0.184 7.184 17 C -0.155 4.155 18 C -0.106 4.106 19 C -0.133 4.133 20 C -0.103 4.103 21 C -0.127 4.127 22 C -0.093 4.093 23 C -0.179 4.179 24 C -0.140 4.140 25 H 0.261 0.739 26 H 0.042 0.958 27 H 0.051 0.949 28 H 0.114 0.886 29 H 0.145 0.855 30 H 0.156 0.844 31 H 0.158 0.842 32 H 0.153 0.847 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.284 -2.910 12.379 15.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.178 4.178 3 Si 0.777 3.223 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.537 4.537 8 H 0.077 0.923 9 C -0.001 4.001 10 C 0.054 3.946 11 O -0.248 6.248 12 C 0.276 3.724 13 O -0.416 6.416 14 C 0.126 3.874 15 H 0.174 0.826 16 F -0.164 7.164 17 C -0.155 4.155 18 C -0.124 4.124 19 C -0.150 4.150 20 C -0.120 4.120 21 C -0.145 4.145 22 C -0.111 4.111 23 C -0.216 4.216 24 C -0.178 4.178 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.132 0.868 29 H 0.162 0.838 30 H 0.174 0.826 31 H 0.176 0.824 32 H 0.170 0.830 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.787 -2.922 12.511 15.024 hybrid contribution -0.500 0.584 -0.215 0.798 sum 7.288 -2.338 12.297 14.484 Atomic orbital electron populations 1.70099 1.07174 1.27488 1.50192 1.25740 0.95628 1.02187 0.94285 0.85595 0.79530 0.79680 0.77487 1.18536 1.20570 1.20994 1.20661 0.92737 0.89434 1.50863 0.92319 1.18920 1.01245 0.94724 0.85241 1.22628 0.82476 0.97531 0.91987 1.86533 1.39319 1.73251 1.25695 1.24563 0.91607 0.74150 0.82114 1.90610 1.29186 1.47157 1.74610 1.19843 0.97127 0.78624 0.91796 0.82625 1.92898 1.97243 1.37439 1.88827 1.19799 0.99778 0.99201 0.96744 1.21224 0.96805 0.99588 0.94828 1.21443 1.00355 0.95277 0.97962 1.21701 0.93580 0.97277 0.99468 1.21570 0.99476 0.99369 0.94041 1.21388 0.97951 0.92960 0.98833 1.23040 0.98877 0.95987 1.03660 1.22442 0.92222 1.01507 1.01623 0.93005 0.93995 0.93030 0.86819 0.83767 0.82599 0.82437 0.82975 0.89397 0.89249 0.90639 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.44 12.68 21.45 0.27 -51.16 16 2 C 0.02 1.17 5.43 84.66 0.46 1.62 16 3 Si 0.95 42.31 29.54 68.60 2.03 44.33 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.50 -26.71 8.73 25.60 0.22 -26.48 16 8 H 0.06 3.12 7.82 -2.91 -0.02 3.09 16 9 C 0.00 -0.04 1.69 -52.93 -0.09 -0.13 16 10 C 0.13 6.06 5.38 71.98 0.39 6.44 16 11 O -0.33 -14.42 10.11 -51.38 -0.52 -14.94 16 12 C 0.43 16.92 7.00 71.24 0.50 17.42 16 13 O -0.53 -23.09 15.64 21.95 0.34 -22.75 16 14 C 0.16 4.86 4.02 29.10 0.12 4.98 16 15 H 0.16 3.59 7.88 -2.39 -0.02 3.57 16 16 F -0.18 -5.66 16.91 44.97 0.76 -4.90 16 17 C -0.15 -4.38 5.04 -19.87 -0.10 -4.48 16 18 C -0.11 -3.07 9.01 22.27 0.20 -2.87 16 19 C -0.13 -3.03 10.05 22.27 0.22 -2.81 16 20 C -0.10 -1.95 10.05 22.27 0.22 -1.73 16 21 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 22 C -0.09 -2.15 9.67 22.27 0.22 -1.93 16 23 C -0.18 -7.46 9.96 30.62 0.30 -7.16 16 24 C -0.14 -6.46 9.19 30.62 0.28 -6.18 16 25 H 0.26 14.05 8.32 -92.71 -0.77 13.28 16 26 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.05 2.32 7.95 -2.38 -0.02 2.30 16 28 H 0.11 3.59 7.44 -2.91 -0.02 3.56 16 29 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 30 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 32 H 0.15 2.75 7.95 -2.91 -0.02 2.73 16 33 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 34 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 35 H 0.08 3.25 8.14 -2.38 -0.02 3.23 16 36 H 0.07 3.57 8.14 -2.39 -0.02 3.55 16 Total: -1.00 -64.97 323.70 7.13 -57.84 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 1.08 Total: 17.11 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: 3.17 Total: -25.53 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.27 Total: -51.16 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -0.18 Total: -37.69 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.76 Total: -4.90 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -64.97 7.13 -57.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769302532.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.555 kcal (2) G-P(sol) polarization free energy of solvation -64.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds