Wall clock time and date at job start Mon Mar 30 2020 23:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48493 * 109.47298 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46778 * 120.00420 * 3 2 1 6 6 H 1.48504 * 109.47247 * 240.00189 * 3 2 1 7 7 C 1.37872 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99957 * 187.12501 * 7 2 1 9 9 C 1.50697 * 120.00119 * 7.11976 * 7 2 1 10 10 C 1.53001 * 115.55287 * 275.21724 * 9 7 2 11 11 O 1.45201 * 109.46744 * 301.70631 * 10 9 7 12 12 C 1.34228 * 116.99901 * 184.73825 * 11 10 9 13 13 O 1.20830 * 119.99904 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00279 * 180.02562 * 12 11 10 15 15 H 1.09004 * 109.47082 * 344.99937 * 14 12 11 16 16 F 1.39898 * 109.47236 * 104.99885 * 14 12 11 17 17 C 1.50705 * 109.47202 * 225.00187 * 14 12 11 18 18 C 1.38237 * 119.99974 * 294.72256 * 17 14 12 19 19 C 1.38227 * 119.99875 * 179.78743 * 18 17 14 20 20 C 1.38235 * 120.00328 * 0.44508 * 19 18 17 21 21 C 1.38231 * 119.99689 * 359.81069 * 20 19 18 22 22 C 1.38234 * 119.99959 * 114.99682 * 17 14 12 23 23 C 1.53002 * 117.49963 * 129.54412 * 9 7 2 24 24 C 1.53003 * 117.49724 * 60.88696 * 9 7 2 25 25 H 0.96999 * 119.99628 * 175.38618 * 1 2 3 26 26 H 1.08995 * 109.46711 * 61.70386 * 10 9 7 27 27 H 1.08997 * 109.47155 * 181.71023 * 10 9 7 28 28 H 1.08005 * 119.99876 * 0.02562 * 18 17 14 29 29 H 1.08004 * 119.99990 * 180.27649 * 19 18 17 30 30 H 1.07993 * 120.00499 * 179.83205 * 20 19 18 31 31 H 1.08001 * 120.00212 * 180.02562 * 21 20 19 32 32 H 1.08000 * 119.99908 * 359.97438 * 22 17 14 33 33 H 1.09007 * 117.49820 * 0.02562 * 23 9 7 34 34 H 1.09001 * 117.49905 * 145.01836 * 23 9 7 35 35 H 1.09007 * 117.49697 * 214.97746 * 24 9 7 36 36 H 1.08995 * 117.49671 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0783 -1.1976 0.1155 9 6 1.2598 -2.4940 -0.1629 10 6 0.6779 -3.0861 1.1223 11 8 1.7463 -3.3073 2.0803 12 6 1.4172 -3.9163 3.2303 13 8 0.2742 -4.2537 3.4297 14 6 2.4731 -4.1791 4.2729 15 1 3.4609 -4.0589 3.8280 16 9 2.3232 -3.2721 5.3275 17 6 2.3249 -5.5851 4.7947 18 6 1.1926 -5.9443 5.5017 19 6 1.0548 -7.2352 5.9764 20 6 2.0533 -8.1645 5.7522 21 6 3.1879 -7.8039 5.0498 22 6 3.3239 -6.5141 4.5712 23 6 1.7685 -3.4718 -1.2241 24 6 0.4683 -2.6980 -1.4563 25 1 -0.4849 -0.8373 -0.0676 26 1 -0.0506 -2.3936 1.5439 27 1 0.1899 -4.0343 0.8970 28 1 0.4140 -5.2173 5.6797 29 1 0.1681 -7.5170 6.5249 30 1 1.9468 -9.1722 6.1255 31 1 3.9679 -8.5300 4.8743 32 1 4.2103 -6.2324 4.0223 33 1 2.6421 -3.1750 -1.8045 34 1 1.6882 -4.5369 -1.0068 35 1 -0.4668 -3.2544 -1.3917 36 1 0.4860 -1.8917 -2.1895 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769302533.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:23 Heat of formation + Delta-G solvation = -87.179808 kcal Electronic energy + Delta-G solvation = -21149.094474 eV Core-core repulsion = 17706.516765 eV Total energy + Delta-G solvation = -3442.577709 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.97711 -40.09867 -39.10639 -37.12484 -35.56698 -32.61164 -31.94441 -31.07444 -28.32319 -26.42586 -24.83434 -22.82570 -22.40973 -21.42269 -20.48241 -19.60847 -17.77584 -17.38113 -17.14128 -16.37532 -16.23841 -15.73016 -15.28869 -14.51915 -14.41351 -14.32047 -13.74959 -13.57362 -13.36815 -12.93952 -12.89800 -12.62966 -12.35325 -12.07459 -11.83953 -11.29996 -11.13118 -10.97473 -10.82809 -10.57484 -10.18725 -10.14786 -10.09669 -9.67114 -9.10143 -9.06483 -8.62649 -8.53872 -8.39117 -6.40486 -4.14285 1.00485 1.24534 2.32379 2.83022 3.42811 3.43886 3.59806 3.62885 4.15092 4.48209 4.55665 4.68694 4.81558 4.87242 4.95664 5.10559 5.16338 5.26885 5.30997 5.46104 5.68886 5.70041 5.88167 5.96922 6.02482 6.20446 6.22194 6.31336 6.32940 6.35993 6.48380 6.73014 6.76577 6.86718 7.09771 7.15633 8.02093 8.17654 8.38338 8.80872 9.59589 10.98494 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024889 B = 0.004408 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.712491 B = 6350.361781 C = 6778.324459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.026 3.974 3 Si 1.068 2.932 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.566 4.566 8 H 0.057 0.943 9 C 0.013 3.987 10 C 0.111 3.889 11 O -0.320 6.320 12 C 0.436 3.564 13 O -0.497 6.497 14 C 0.156 3.844 15 H 0.123 0.877 16 F -0.178 7.178 17 C -0.130 4.130 18 C -0.069 4.069 19 C -0.127 4.127 20 C -0.106 4.106 21 C -0.128 4.128 22 C -0.091 4.091 23 C -0.190 4.190 24 C -0.167 4.167 25 H 0.272 0.728 26 H 0.070 0.930 27 H 0.044 0.956 28 H 0.133 0.867 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.493 -13.798 9.032 17.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.180 4.180 3 Si 0.896 3.104 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.603 4.603 8 H 0.075 0.925 9 C 0.012 3.988 10 C 0.037 3.963 11 O -0.234 6.234 12 C 0.276 3.724 13 O -0.386 6.386 14 C 0.118 3.882 15 H 0.141 0.859 16 F -0.158 7.158 17 C -0.131 4.131 18 C -0.087 4.087 19 C -0.145 4.145 20 C -0.124 4.124 21 C -0.146 4.146 22 C -0.109 4.109 23 C -0.227 4.227 24 C -0.205 4.205 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.151 0.849 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.921 -12.188 9.123 15.999 hybrid contribution -0.074 -1.663 -0.055 1.665 sum 4.847 -13.851 9.067 17.250 Atomic orbital electron populations 1.70778 1.06809 1.31324 1.44966 1.25851 0.96506 1.02471 0.93151 0.83552 0.74956 0.75223 0.76666 1.20766 1.21297 1.21331 1.21194 0.94536 0.89219 1.55360 0.92486 1.19066 0.99437 0.95952 0.84330 1.23002 0.86950 0.98071 0.88252 1.86564 1.42729 1.68399 1.25739 1.23688 0.89191 0.75640 0.83838 1.90626 1.21472 1.47970 1.78485 1.19745 0.99808 0.85627 0.82998 0.85909 1.92930 1.97098 1.68303 1.57478 1.19766 0.96999 0.93854 1.02448 1.21167 0.96269 0.96803 0.94464 1.21178 0.99343 0.93242 1.00693 1.21265 0.93847 0.99455 0.97861 1.21099 0.98375 0.96048 0.99110 1.21042 0.98037 0.93162 0.98657 1.22924 0.97861 0.95532 1.06404 1.22797 0.93479 1.02313 1.01884 0.91689 0.91190 0.93727 0.84940 0.85599 0.85818 0.85527 0.85178 0.89637 0.91312 0.91219 0.89044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.45 13.57 55.43 0.75 -25.69 16 2 C 0.03 0.71 5.39 -17.82 -0.10 0.62 16 3 Si 1.07 24.73 29.91 -169.99 -5.08 19.64 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.57 -15.47 8.64 -34.44 -0.30 -15.77 16 8 H 0.06 1.58 7.82 -52.48 -0.41 1.16 16 9 C 0.01 0.31 1.20 -155.66 -0.19 0.12 16 10 C 0.11 2.58 5.30 37.16 0.20 2.78 16 11 O -0.32 -7.05 10.03 -39.25 -0.39 -7.45 16 12 C 0.44 8.48 7.29 36.00 0.26 8.75 16 13 O -0.50 -10.48 14.91 -18.75 -0.28 -10.76 16 14 C 0.16 2.38 4.07 -29.03 -0.12 2.26 16 15 H 0.12 1.54 7.89 -51.93 -0.41 1.13 16 16 F -0.18 -2.93 16.91 2.25 0.04 -2.90 16 17 C -0.13 -1.78 5.00 -104.62 -0.52 -2.31 16 18 C -0.07 -0.94 8.57 -39.59 -0.34 -1.28 16 19 C -0.13 -1.40 10.05 -39.59 -0.40 -1.80 16 20 C -0.11 -1.03 10.05 -39.58 -0.40 -1.42 16 21 C -0.13 -1.25 10.05 -39.58 -0.40 -1.64 16 22 C -0.09 -1.02 9.67 -39.58 -0.38 -1.40 16 23 C -0.19 -4.04 9.94 -26.69 -0.27 -4.30 16 24 C -0.17 -3.74 8.75 -26.69 -0.23 -3.98 16 25 H 0.27 7.86 6.15 -40.82 -0.25 7.61 16 26 H 0.07 1.78 7.76 -51.93 -0.40 1.38 16 27 H 0.04 0.96 8.00 -51.93 -0.42 0.55 16 28 H 0.13 1.93 7.43 -52.48 -0.39 1.54 16 29 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 30 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.13 1.16 7.95 -52.49 -0.42 0.74 16 33 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 36 H 0.09 2.16 8.14 -51.93 -0.42 1.73 16 LS Contribution 320.36 15.07 4.83 4.83 Total: -1.00 -31.33 320.36 -7.77 -39.10 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -4.45 Total: 2.60 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -3.18 Total: -19.38 kcal Atomic # 7 Polarization: -26.45 SS G_CDS: 0.75 Total: -25.69 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.67 Total: -18.21 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.90 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.08 Total: 19.64 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.33 -7.77 -39.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769302533.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.078 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds