Wall clock time and date at job start Mon Mar 30 2020 23:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48493 * 109.47298 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46778 * 120.00420 * 3 2 1 6 6 H 1.48504 * 109.47247 * 240.00189 * 3 2 1 7 7 C 1.37872 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99957 * 187.12501 * 7 2 1 9 9 C 1.50697 * 120.00119 * 7.11976 * 7 2 1 10 10 C 1.53001 * 115.55287 * 275.21724 * 9 7 2 11 11 O 1.45201 * 109.46744 * 301.70631 * 10 9 7 12 12 C 1.34228 * 116.99901 * 184.73825 * 11 10 9 13 13 O 1.20830 * 119.99904 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00279 * 180.02562 * 12 11 10 15 15 H 1.09004 * 109.47082 * 344.99937 * 14 12 11 16 16 F 1.39898 * 109.47236 * 104.99885 * 14 12 11 17 17 C 1.50705 * 109.47202 * 225.00187 * 14 12 11 18 18 C 1.38237 * 119.99974 * 294.72256 * 17 14 12 19 19 C 1.38227 * 119.99875 * 179.78743 * 18 17 14 20 20 C 1.38235 * 120.00328 * 0.44508 * 19 18 17 21 21 C 1.38231 * 119.99689 * 359.81069 * 20 19 18 22 22 C 1.38234 * 119.99959 * 114.99682 * 17 14 12 23 23 C 1.53002 * 117.49963 * 129.54412 * 9 7 2 24 24 C 1.53003 * 117.49724 * 60.88696 * 9 7 2 25 25 H 0.96999 * 119.99628 * 175.38618 * 1 2 3 26 26 H 1.08995 * 109.46711 * 61.70386 * 10 9 7 27 27 H 1.08997 * 109.47155 * 181.71023 * 10 9 7 28 28 H 1.08005 * 119.99876 * 0.02562 * 18 17 14 29 29 H 1.08004 * 119.99990 * 180.27649 * 19 18 17 30 30 H 1.07993 * 120.00499 * 179.83205 * 20 19 18 31 31 H 1.08001 * 120.00212 * 180.02562 * 21 20 19 32 32 H 1.08000 * 119.99908 * 359.97438 * 22 17 14 33 33 H 1.09007 * 117.49820 * 0.02562 * 23 9 7 34 34 H 1.09001 * 117.49905 * 145.01836 * 23 9 7 35 35 H 1.09007 * 117.49697 * 214.97746 * 24 9 7 36 36 H 1.08995 * 117.49671 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0783 -1.1976 0.1155 9 6 1.2598 -2.4940 -0.1629 10 6 0.6779 -3.0861 1.1223 11 8 1.7463 -3.3073 2.0803 12 6 1.4172 -3.9163 3.2303 13 8 0.2742 -4.2537 3.4297 14 6 2.4731 -4.1791 4.2729 15 1 3.4609 -4.0589 3.8280 16 9 2.3232 -3.2721 5.3275 17 6 2.3249 -5.5851 4.7947 18 6 1.1926 -5.9443 5.5017 19 6 1.0548 -7.2352 5.9764 20 6 2.0533 -8.1645 5.7522 21 6 3.1879 -7.8039 5.0498 22 6 3.3239 -6.5141 4.5712 23 6 1.7685 -3.4718 -1.2241 24 6 0.4683 -2.6980 -1.4563 25 1 -0.4849 -0.8373 -0.0676 26 1 -0.0506 -2.3936 1.5439 27 1 0.1899 -4.0343 0.8970 28 1 0.4140 -5.2173 5.6797 29 1 0.1681 -7.5170 6.5249 30 1 1.9468 -9.1722 6.1255 31 1 3.9679 -8.5300 4.8743 32 1 4.2103 -6.2324 4.0223 33 1 2.6421 -3.1750 -1.8045 34 1 1.6882 -4.5369 -1.0068 35 1 -0.4668 -3.2544 -1.3917 36 1 0.4860 -1.8917 -2.1895 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769302533.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:23 Heat of formation + Delta-G solvation = -102.752425 kcal Electronic energy + Delta-G solvation = -21149.769753 eV Core-core repulsion = 17706.516765 eV Total energy + Delta-G solvation = -3443.252988 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.25951 -41.65341 -40.07007 -38.89976 -37.28122 -34.01892 -33.61658 -31.90420 -29.72568 -27.95433 -26.90312 -23.73363 -23.54491 -23.11521 -21.79719 -21.54665 -19.27197 -18.97054 -18.43625 -17.93395 -17.54977 -16.99868 -16.58155 -16.06550 -15.63451 -15.52651 -15.38593 -15.01064 -14.70969 -14.47949 -14.33559 -13.97063 -13.74164 -13.58348 -13.25199 -12.86502 -12.66150 -12.30288 -12.19801 -12.02412 -11.96646 -11.91510 -11.72155 -11.41263 -10.56051 -10.48935 -10.40085 -9.97121 -9.91424 -8.58259 -6.32140 0.09886 0.40746 0.78627 1.37630 1.54854 1.61589 1.80779 2.57470 2.71716 3.06474 3.08276 3.17866 3.42055 3.52969 3.81079 3.89430 4.07433 4.10855 4.13268 4.20654 4.23133 4.38415 4.51205 4.53867 4.61257 4.76709 4.87147 4.93997 5.06118 5.12296 5.36115 5.38915 5.42551 5.46080 5.51285 5.97171 6.10298 6.20215 6.42678 6.65800 7.48748 8.81818 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024889 B = 0.004408 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.712491 B = 6350.361781 C = 6778.324459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.021 4.021 3 Si 1.109 2.891 4 H -0.287 1.287 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.574 4.574 8 H 0.048 0.952 9 C -0.025 4.025 10 C 0.121 3.879 11 O -0.332 6.332 12 C 0.432 3.568 13 O -0.519 6.519 14 C 0.161 3.839 15 H 0.153 0.847 16 F -0.188 7.188 17 C -0.153 4.153 18 C -0.097 4.097 19 C -0.134 4.134 20 C -0.101 4.101 21 C -0.125 4.125 22 C -0.093 4.093 23 C -0.162 4.162 24 C -0.164 4.164 25 H 0.263 0.737 26 H 0.036 0.964 27 H 0.060 0.940 28 H 0.107 0.893 29 H 0.142 0.858 30 H 0.157 0.843 31 H 0.161 0.839 32 H 0.154 0.846 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.452 -15.976 9.208 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.221 4.221 3 Si 0.932 3.068 4 H -0.213 1.213 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.611 4.611 8 H 0.066 0.934 9 C -0.025 4.025 10 C 0.048 3.952 11 O -0.247 6.247 12 C 0.273 3.727 13 O -0.408 6.408 14 C 0.124 3.876 15 H 0.171 0.829 16 F -0.168 7.168 17 C -0.154 4.154 18 C -0.116 4.116 19 C -0.152 4.152 20 C -0.118 4.118 21 C -0.143 4.143 22 C -0.111 4.111 23 C -0.199 4.199 24 C -0.202 4.202 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.126 0.874 29 H 0.160 0.840 30 H 0.175 0.825 31 H 0.179 0.821 32 H 0.171 0.829 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.894 -14.390 9.303 18.470 hybrid contribution -0.685 -1.105 -0.056 1.301 sum 6.209 -15.495 9.247 19.083 Atomic orbital electron populations 1.70878 1.07721 1.30861 1.47361 1.27114 0.96582 1.05842 0.92534 0.83029 0.74239 0.71702 0.77872 1.21254 1.20070 1.19232 1.21464 0.94342 0.90798 1.54517 0.93369 1.19150 1.01444 0.96403 0.85528 1.22665 0.86697 0.97778 0.88079 1.86566 1.42362 1.69132 1.26680 1.24642 0.90070 0.74361 0.83606 1.90605 1.22842 1.48635 1.78709 1.19975 0.99347 0.86627 0.81612 0.82948 1.92905 1.97106 1.68981 1.57841 1.19763 0.98311 0.93289 1.03991 1.21159 0.96276 0.97789 0.96336 1.21432 1.00669 0.92462 1.00617 1.21702 0.92984 1.00492 0.96656 1.21558 0.99042 0.95933 0.97720 1.21366 0.97988 0.93278 0.98495 1.22958 0.97089 0.96352 1.03513 1.22742 0.95025 1.02306 1.00126 0.92692 0.94585 0.92220 0.87436 0.83978 0.82517 0.82139 0.82858 0.89263 0.88546 0.89455 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.81 13.57 21.45 0.29 -55.52 16 2 C -0.02 -1.19 5.39 84.65 0.46 -0.73 16 3 Si 1.11 49.92 29.91 68.60 2.05 51.97 16 4 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 7 C -0.57 -31.63 8.64 25.60 0.22 -31.41 16 8 H 0.05 2.67 7.82 -2.91 -0.02 2.64 16 9 C -0.02 -1.21 1.20 -52.93 -0.06 -1.27 16 10 C 0.12 5.76 5.30 71.98 0.38 6.15 16 11 O -0.33 -14.79 10.03 -51.40 -0.52 -15.30 16 12 C 0.43 17.04 7.29 71.24 0.52 17.56 16 13 O -0.52 -22.61 14.91 21.95 0.33 -22.28 16 14 C 0.16 4.89 4.07 29.10 0.12 5.01 16 15 H 0.15 3.61 7.89 -2.39 -0.02 3.59 16 16 F -0.19 -6.30 16.91 44.97 0.76 -5.54 16 17 C -0.15 -4.06 5.00 -19.86 -0.10 -4.16 16 18 C -0.10 -2.68 8.57 22.27 0.19 -2.49 16 19 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 20 C -0.10 -1.60 10.05 22.27 0.22 -1.38 16 21 C -0.12 -1.94 10.05 22.27 0.22 -1.72 16 22 C -0.09 -1.83 9.67 22.27 0.22 -1.62 16 23 C -0.16 -6.60 9.94 30.62 0.30 -6.30 16 24 C -0.16 -7.30 8.75 30.62 0.27 -7.03 16 25 H 0.26 15.71 6.15 -92.71 -0.57 15.14 16 26 H 0.04 1.91 7.76 -2.39 -0.02 1.90 16 27 H 0.06 2.59 8.00 -2.39 -0.02 2.57 16 28 H 0.11 3.37 7.43 -2.91 -0.02 3.35 16 29 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 30 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 31 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 32 H 0.15 2.18 7.95 -2.91 -0.02 2.16 16 33 H 0.09 3.55 8.14 -2.38 -0.02 3.53 16 34 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 35 H 0.09 3.51 8.14 -2.38 -0.02 3.49 16 36 H 0.07 3.50 8.14 -2.39 -0.02 3.49 16 Total: -1.00 -69.41 320.36 7.38 -62.03 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 1.28 Total: 16.59 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 3.18 Total: -31.93 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.29 Total: -55.52 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -0.19 Total: -37.59 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.76 Total: -5.54 kcal Atomic # 14 Polarization: 49.92 SS G_CDS: 2.05 Total: 51.97 kcal Total: -69.41 7.38 -62.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769302533.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.721 kcal (2) G-P(sol) polarization free energy of solvation -69.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds