Wall clock time and date at job start Tue Mar 31 2020 00:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37841 * 120.06172 * 2 1 4 4 C 1.38651 * 120.12296 * 180.25482 * 3 2 1 5 5 F 1.35099 * 119.87591 * 179.76351 * 4 3 2 6 6 C 1.38688 * 120.24597 * 359.78207 * 4 3 2 7 7 C 1.37798 * 120.12742 * 359.97438 * 6 4 3 8 8 C 1.39675 * 120.06223 * 179.78431 * 2 1 3 9 9 C 1.47599 * 120.12611 * 0.02562 * 8 2 1 10 10 O 1.21490 * 120.00027 * 359.11771 * 9 8 2 11 11 O 1.34726 * 120.00231 * 179.12835 * 9 8 2 12 12 C 1.45210 * 116.99951 * 185.11983 * 11 9 8 13 13 C 1.52998 * 109.47175 * 184.77755 * 12 11 9 14 14 C 1.50697 * 115.55080 * 301.52476 * 13 12 11 15 15 H 1.08000 * 120.00384 * 89.38306 * 14 13 12 16 16 C 1.37881 * 119.99978 * 269.38738 * 14 13 12 17 17 N 1.31515 * 119.99671 * 6.39119 * 16 14 13 18 18 Si 1.86801 * 120.00244 * 186.38641 * 16 14 13 19 19 H 1.48500 * 109.47206 * 179.97438 * 18 16 14 20 20 H 1.48499 * 109.47321 * 300.00354 * 18 16 14 21 21 H 1.48496 * 109.46788 * 60.00147 * 18 16 14 22 22 C 1.52999 * 117.49622 * 87.19008 * 13 12 11 23 23 C 1.52997 * 117.49699 * 155.85203 * 13 12 11 24 24 H 1.08998 * 109.47538 * 262.88193 * 1 2 3 25 25 H 1.09003 * 109.46924 * 22.88064 * 1 2 3 26 26 H 1.09002 * 109.47149 * 142.87804 * 1 2 3 27 27 H 1.07998 * 119.93897 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.93622 * 179.97438 * 6 4 3 29 29 H 1.08004 * 120.06486 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46917 * 64.77713 * 12 11 9 31 31 H 1.08999 * 109.46686 * 304.78174 * 12 11 9 32 32 H 0.97000 * 120.00337 * 355.23122 * 17 16 14 33 33 H 1.09003 * 117.49856 * 215.00291 * 22 13 12 34 34 H 1.08999 * 117.50055 * 0.02613 * 22 13 12 35 35 H 1.08994 * 117.50125 * 359.97438 * 23 13 12 36 36 H 1.09002 * 117.49485 * 144.97741 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1930 0.0000 4 6 3.5840 1.1945 -0.0053 5 9 4.2557 2.3667 -0.0101 6 6 4.2839 -0.0028 -0.0061 7 6 3.6040 -1.2014 -0.0011 8 6 2.2067 -1.2089 0.0046 9 6 1.4729 -2.4895 0.0088 10 8 0.2581 -2.4935 0.0245 11 8 2.1502 -3.6541 -0.0046 12 6 1.3663 -4.8714 -0.1149 13 6 2.2897 -6.0853 0.0058 14 6 3.3961 -6.1643 -1.0144 15 1 4.3504 -5.7005 -0.8130 16 6 3.1900 -6.8287 -2.2049 17 7 1.9933 -7.2842 -2.5050 18 14 4.6103 -7.0816 -3.3914 19 1 4.1305 -7.8187 -4.5880 20 1 5.1501 -5.7617 -3.8059 21 1 5.6797 -7.8660 -2.7234 22 6 2.5866 -6.6100 1.4120 23 6 1.6682 -7.4015 0.4773 24 1 -0.3634 -0.1273 1.0197 25 1 -0.3633 0.9468 -0.3996 26 1 -0.3633 -0.8194 -0.6202 27 1 1.6575 2.1283 0.0004 28 1 5.3638 0.0042 -0.0107 29 1 4.1500 -2.1332 -0.0022 30 1 0.8625 -4.8927 -1.0812 31 1 0.6238 -4.8988 0.6827 32 1 1.2720 -7.2145 -1.8602 33 1 3.5821 -7.0124 1.5992 34 1 2.1237 -6.0907 2.2511 35 1 0.6017 -7.4024 0.7020 36 1 2.0594 -8.3245 0.0494 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771618993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:51 Heat of formation + Delta-G solvation = -87.846050 kcal Electronic energy + Delta-G solvation = -21096.610897 eV Core-core repulsion = 17654.004297 eV Total energy + Delta-G solvation = -3442.606599 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.14662 -40.37315 -38.65415 -37.03681 -35.54942 -32.76353 -31.90259 -31.14526 -27.69799 -26.74554 -24.87362 -23.76139 -22.16597 -21.40645 -20.63378 -19.58077 -17.67528 -17.34843 -17.08302 -16.45023 -15.99850 -15.87095 -15.62412 -14.63270 -14.12117 -13.77385 -13.74700 -13.61707 -13.44773 -13.18054 -12.88817 -12.57263 -12.22652 -12.17405 -11.88194 -11.84687 -11.19755 -10.97032 -10.84897 -10.54211 -10.14189 -10.10777 -9.90024 -9.59769 -9.12440 -8.87418 -8.58517 -8.52076 -8.41471 -6.40247 -4.14383 0.52877 1.06069 2.63686 3.10540 3.41187 3.41869 3.59371 3.61001 3.96779 4.47030 4.51383 4.61172 4.81569 4.94017 5.05849 5.21636 5.26708 5.46878 5.62303 5.71159 5.74320 5.76179 5.91181 5.99872 6.02186 6.06025 6.12413 6.24138 6.28858 6.45664 6.51465 6.63974 6.75629 6.96384 7.14737 7.21126 8.13485 8.24228 8.37992 8.81327 9.59579 10.98815 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018799 B = 0.004811 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.099453 B = 5818.097258 C = 6572.446234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.008 3.992 3 C -0.174 4.174 4 C 0.131 3.869 5 F -0.137 7.137 6 C -0.176 4.176 7 C -0.023 4.023 8 C -0.135 4.135 9 C 0.500 3.500 10 O -0.514 6.514 11 O -0.325 6.325 12 C 0.114 3.886 13 C 0.012 3.988 14 C -0.564 4.564 15 H 0.057 0.943 16 C 0.026 3.974 17 N -0.907 5.907 18 Si 1.067 2.933 19 H -0.283 1.283 20 H -0.287 1.287 21 H -0.287 1.287 22 C -0.192 4.192 23 C -0.166 4.166 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.104 0.896 27 H 0.142 0.858 28 H 0.143 0.857 29 H 0.155 0.845 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.274 0.726 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.936 13.988 5.484 15.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.007 3.993 3 C -0.193 4.193 4 C 0.112 3.888 5 F -0.115 7.115 6 C -0.194 4.194 7 C -0.041 4.041 8 C -0.136 4.136 9 C 0.346 3.654 10 O -0.406 6.406 11 O -0.240 6.240 12 C 0.040 3.960 13 C 0.012 3.988 14 C -0.602 4.602 15 H 0.075 0.925 16 C -0.180 4.180 17 N -0.541 5.541 18 Si 0.895 3.105 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.214 1.214 22 C -0.229 4.229 23 C -0.204 4.204 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.159 0.841 28 H 0.161 0.839 29 H 0.173 0.827 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.991 13.362 3.991 13.980 hybrid contribution -0.358 0.810 1.563 1.797 sum 0.633 14.172 5.554 15.235 Atomic orbital electron populations 1.21217 0.89223 1.03746 1.04178 1.19869 0.97216 0.90354 0.91850 1.20918 0.92084 0.99056 1.07246 1.17983 0.90177 0.81245 0.99426 1.91510 1.80532 1.45996 1.93458 1.21133 1.01362 0.90754 1.06183 1.21506 0.92856 0.98863 0.90900 1.19183 0.93704 0.90873 1.09825 1.21020 0.85947 0.85250 0.73207 1.90721 1.14863 1.88171 1.46876 1.86597 1.41313 1.14351 1.81758 1.22931 0.92350 0.80516 1.00182 1.19068 0.97369 0.88548 0.93838 1.21182 0.97956 1.38363 1.02696 0.92515 1.25829 1.01063 0.93368 0.97734 1.70764 1.01298 1.45076 1.36995 0.83570 0.74402 0.76591 0.75938 1.20791 1.21362 1.21353 1.22961 1.00008 1.05864 0.94054 1.22765 0.96368 0.97062 1.04167 0.90218 0.91947 0.87793 0.84050 0.83895 0.82698 0.91535 0.93736 0.91477 0.89720 0.91367 0.91197 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 8.79 36.01 0.32 -1.25 16 2 C 0.01 0.10 5.91 -104.23 -0.62 -0.52 16 3 C -0.17 -1.99 9.64 -39.57 -0.38 -2.37 16 4 C 0.13 1.54 7.31 -39.26 -0.29 1.25 16 5 F -0.14 -1.58 17.26 2.25 0.04 -1.54 16 6 C -0.18 -2.06 10.01 -39.58 -0.40 -2.46 16 7 C -0.02 -0.32 9.61 -39.19 -0.38 -0.70 16 8 C -0.13 -2.08 5.87 -104.98 -0.62 -2.70 16 9 C 0.50 9.42 7.86 34.55 0.27 9.69 16 10 O -0.51 -10.17 12.95 -19.26 -0.25 -10.42 16 11 O -0.33 -6.92 9.28 -40.56 -0.38 -7.30 16 12 C 0.11 2.58 5.42 37.16 0.20 2.78 16 13 C 0.01 0.30 1.37 -155.66 -0.21 0.08 16 14 C -0.56 -15.14 8.68 -34.44 -0.30 -15.44 16 15 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 16 C 0.03 0.70 5.36 -17.82 -0.10 0.60 16 17 N -0.91 -26.11 13.51 55.43 0.75 -25.36 16 18 Si 1.07 24.34 29.91 -169.99 -5.08 19.26 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 22 C -0.19 -4.06 9.94 -26.69 -0.27 -4.33 16 23 C -0.17 -3.70 8.21 -26.69 -0.22 -3.92 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.60 8.03 -51.93 -0.42 0.18 16 26 H 0.10 1.53 5.74 -51.93 -0.30 1.23 16 27 H 0.14 1.26 8.05 -52.49 -0.42 0.84 16 28 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 29 H 0.16 2.16 7.61 -52.48 -0.40 1.76 16 30 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 31 H 0.04 0.94 7.94 -51.93 -0.41 0.53 16 32 H 0.27 7.77 6.22 -40.82 -0.25 7.52 16 33 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.09 2.19 8.14 -51.93 -0.42 1.77 16 LS Contribution 316.56 15.07 4.77 4.77 Total: -1.00 -29.38 316.56 -7.50 -36.88 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -4.37 Total: 2.98 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -2.98 Total: -19.27 kcal Atomic # 7 Polarization: -26.11 SS G_CDS: 0.75 Total: -25.36 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.63 Total: -17.72 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.08 Total: 19.26 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.38 -7.50 -36.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771618993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.969 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds