Wall clock time and date at job start Tue Mar 31 2020 00:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37841 * 120.06172 * 2 1 4 4 C 1.38651 * 120.12296 * 180.25482 * 3 2 1 5 5 F 1.35099 * 119.87591 * 179.76351 * 4 3 2 6 6 C 1.38688 * 120.24597 * 359.78207 * 4 3 2 7 7 C 1.37798 * 120.12742 * 359.97438 * 6 4 3 8 8 C 1.39675 * 120.06223 * 179.78431 * 2 1 3 9 9 C 1.47599 * 120.12611 * 0.02562 * 8 2 1 10 10 O 1.21490 * 120.00027 * 359.11771 * 9 8 2 11 11 O 1.34726 * 120.00231 * 179.12835 * 9 8 2 12 12 C 1.45210 * 116.99951 * 185.11983 * 11 9 8 13 13 C 1.52998 * 109.47175 * 184.77755 * 12 11 9 14 14 C 1.50697 * 115.55080 * 301.52476 * 13 12 11 15 15 H 1.08000 * 120.00384 * 89.38306 * 14 13 12 16 16 C 1.37881 * 119.99978 * 269.38738 * 14 13 12 17 17 N 1.31515 * 119.99671 * 6.39119 * 16 14 13 18 18 Si 1.86801 * 120.00244 * 186.38641 * 16 14 13 19 19 H 1.48500 * 109.47206 * 179.97438 * 18 16 14 20 20 H 1.48499 * 109.47321 * 300.00354 * 18 16 14 21 21 H 1.48496 * 109.46788 * 60.00147 * 18 16 14 22 22 C 1.52999 * 117.49622 * 87.19008 * 13 12 11 23 23 C 1.52997 * 117.49699 * 155.85203 * 13 12 11 24 24 H 1.08998 * 109.47538 * 262.88193 * 1 2 3 25 25 H 1.09003 * 109.46924 * 22.88064 * 1 2 3 26 26 H 1.09002 * 109.47149 * 142.87804 * 1 2 3 27 27 H 1.07998 * 119.93897 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.93622 * 179.97438 * 6 4 3 29 29 H 1.08004 * 120.06486 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46917 * 64.77713 * 12 11 9 31 31 H 1.08999 * 109.46686 * 304.78174 * 12 11 9 32 32 H 0.97000 * 120.00337 * 355.23122 * 17 16 14 33 33 H 1.09003 * 117.49856 * 215.00291 * 22 13 12 34 34 H 1.08999 * 117.50055 * 0.02613 * 22 13 12 35 35 H 1.08994 * 117.50125 * 359.97438 * 23 13 12 36 36 H 1.09002 * 117.49485 * 144.97741 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1930 0.0000 4 6 3.5840 1.1945 -0.0053 5 9 4.2557 2.3667 -0.0101 6 6 4.2839 -0.0028 -0.0061 7 6 3.6040 -1.2014 -0.0011 8 6 2.2067 -1.2089 0.0046 9 6 1.4729 -2.4895 0.0088 10 8 0.2581 -2.4935 0.0245 11 8 2.1502 -3.6541 -0.0046 12 6 1.3663 -4.8714 -0.1149 13 6 2.2897 -6.0853 0.0058 14 6 3.3961 -6.1643 -1.0144 15 1 4.3504 -5.7005 -0.8130 16 6 3.1900 -6.8287 -2.2049 17 7 1.9933 -7.2842 -2.5050 18 14 4.6103 -7.0816 -3.3914 19 1 4.1305 -7.8187 -4.5880 20 1 5.1501 -5.7617 -3.8059 21 1 5.6797 -7.8660 -2.7234 22 6 2.5866 -6.6100 1.4120 23 6 1.6682 -7.4015 0.4773 24 1 -0.3634 -0.1273 1.0197 25 1 -0.3633 0.9468 -0.3996 26 1 -0.3633 -0.8194 -0.6202 27 1 1.6575 2.1283 0.0004 28 1 5.3638 0.0042 -0.0107 29 1 4.1500 -2.1332 -0.0022 30 1 0.8625 -4.8927 -1.0812 31 1 0.6238 -4.8988 0.6827 32 1 1.2720 -7.2145 -1.8602 33 1 3.5821 -7.0124 1.5992 34 1 2.1237 -6.0907 2.2511 35 1 0.6017 -7.4024 0.7020 36 1 2.0594 -8.3245 0.0494 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771618993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:49 Heat of formation + Delta-G solvation = -101.501412 kcal Electronic energy + Delta-G solvation = -21097.203038 eV Core-core repulsion = 17654.004297 eV Total energy + Delta-G solvation = -3443.198740 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -50.07874 -41.75329 -39.91397 -38.74491 -37.16682 -33.94968 -33.77307 -32.24345 -29.05172 -28.11318 -26.91038 -24.94790 -23.32892 -23.06424 -21.92299 -21.49487 -19.01542 -18.89064 -18.30302 -17.84350 -17.38982 -17.18877 -16.72824 -16.05588 -15.62716 -15.49067 -15.12699 -14.72786 -14.57285 -14.52952 -14.29624 -14.07358 -13.81043 -13.64996 -13.16886 -12.87635 -12.85493 -12.65285 -12.28020 -12.14136 -11.94775 -11.81196 -11.54589 -11.17547 -10.50788 -10.46012 -10.37985 -10.10123 -9.90658 -8.55005 -6.29046 -0.57913 0.09009 1.32770 1.55539 1.61619 1.65007 1.81355 2.46991 2.58636 2.99518 3.16094 3.22356 3.53152 3.58249 3.72223 3.96002 3.99881 4.12276 4.18757 4.26477 4.41526 4.53928 4.54280 4.66321 4.73341 4.78333 4.80217 4.94731 4.97003 5.01174 5.12718 5.19170 5.33027 5.40415 5.58056 5.71483 6.14146 6.23142 6.65589 6.72640 7.51658 8.85369 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018799 B = 0.004811 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.099453 B = 5818.097258 C = 6572.446234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.005 3.995 3 C -0.163 4.163 4 C 0.138 3.862 5 F -0.131 7.131 6 C -0.168 4.168 7 C -0.030 4.030 8 C -0.159 4.159 9 C 0.495 3.505 10 O -0.530 6.530 11 O -0.339 6.339 12 C 0.126 3.874 13 C -0.022 4.022 14 C -0.572 4.572 15 H 0.047 0.953 16 C -0.020 4.020 17 N -0.934 5.934 18 Si 1.108 2.892 19 H -0.287 1.287 20 H -0.274 1.274 21 H -0.270 1.270 22 C -0.167 4.167 23 C -0.163 4.163 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.173 0.827 28 H 0.168 0.832 29 H 0.147 0.853 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.265 0.735 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.913 16.078 6.150 17.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.004 3.996 3 C -0.181 4.181 4 C 0.118 3.882 5 F -0.109 7.109 6 C -0.186 4.186 7 C -0.048 4.048 8 C -0.160 4.160 9 C 0.342 3.658 10 O -0.423 6.423 11 O -0.254 6.254 12 C 0.052 3.948 13 C -0.023 4.023 14 C -0.609 4.609 15 H 0.066 0.934 16 C -0.220 4.220 17 N -0.570 5.570 18 Si 0.931 3.069 19 H -0.213 1.213 20 H -0.200 1.200 21 H -0.195 1.195 22 C -0.204 4.204 23 C -0.201 4.201 24 H 0.100 0.900 25 H 0.112 0.888 26 H 0.094 0.906 27 H 0.191 0.809 28 H 0.185 0.815 29 H 0.164 0.836 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.974 15.469 4.681 16.282 hybrid contribution -0.651 0.290 1.405 1.576 sum 1.323 15.760 6.087 16.946 Atomic orbital electron populations 1.21171 0.88698 1.04315 1.03894 1.20006 0.97709 0.90142 0.91711 1.21166 0.92064 0.99395 1.05459 1.18054 0.90411 0.81288 0.98440 1.91535 1.80460 1.45656 1.93266 1.21315 1.02567 0.89903 1.04849 1.21452 0.92233 0.99530 0.91606 1.19169 0.94394 0.89767 1.12717 1.21687 0.86139 0.85527 0.72453 1.90713 1.15554 1.88325 1.47715 1.86592 1.41673 1.14766 1.82413 1.22567 0.92204 0.81081 0.98973 1.19165 0.97913 0.89858 0.95322 1.21436 0.98358 1.37646 1.03498 0.93424 1.27070 1.02314 0.92989 0.99620 1.70860 1.01939 1.47020 1.37227 0.83043 0.72438 0.77262 0.74195 1.21278 1.19952 1.19498 1.22974 0.99985 1.04206 0.93266 1.22697 0.97589 0.95494 1.04279 0.90020 0.88753 0.90631 0.80925 0.81491 0.83568 0.94503 0.92450 0.92406 0.89573 0.88815 0.89372 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.89 8.79 71.24 0.63 -2.26 16 2 C 0.00 0.12 5.91 -19.61 -0.12 0.00 16 3 C -0.16 -3.17 9.64 22.27 0.21 -2.95 16 4 C 0.14 2.79 7.31 22.48 0.16 2.95 16 5 F -0.13 -2.55 17.26 44.97 0.78 -1.78 16 6 C -0.17 -3.54 10.01 22.27 0.22 -3.32 16 7 C -0.03 -0.80 9.61 22.53 0.22 -0.59 16 8 C -0.16 -4.87 5.87 -20.10 -0.12 -4.98 16 9 C 0.49 19.04 7.86 70.29 0.55 19.59 16 10 O -0.53 -21.52 12.95 19.87 0.26 -21.27 16 11 O -0.34 -14.78 9.28 -56.36 -0.52 -15.30 16 12 C 0.13 5.84 5.42 71.98 0.39 6.23 16 13 C -0.02 -1.07 1.37 -52.93 -0.07 -1.15 16 14 C -0.57 -31.14 8.68 25.60 0.22 -30.92 16 15 H 0.05 2.61 7.82 -2.91 -0.02 2.58 16 16 C -0.02 -1.12 5.36 84.66 0.45 -0.67 16 17 N -0.93 -55.08 13.51 21.45 0.29 -54.79 16 18 Si 1.11 49.20 29.91 68.60 2.05 51.25 16 19 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 22 C -0.17 -6.92 9.94 30.62 0.30 -6.62 16 23 C -0.16 -7.29 8.21 30.62 0.25 -7.03 16 24 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.09 1.53 8.03 -2.39 -0.02 1.52 16 26 H 0.08 2.23 5.74 -2.39 -0.01 2.21 16 27 H 0.17 2.27 8.05 -2.91 -0.02 2.25 16 28 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 29 H 0.15 4.12 7.61 -2.91 -0.02 4.09 16 30 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.06 2.46 7.94 -2.39 -0.02 2.44 16 32 H 0.27 15.57 6.22 -92.71 -0.58 15.00 16 33 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 34 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 35 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 36 H 0.07 3.50 8.14 -2.39 -0.02 3.48 16 Total: -1.00 -64.08 316.56 7.45 -56.64 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 1.28 Total: 16.97 kcal Atomic # 6 Polarization: -35.03 SS G_CDS: 3.31 Total: -31.72 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.29 Total: -54.79 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -0.27 Total: -36.56 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.78 Total: -1.78 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 2.05 Total: 51.25 kcal Total: -64.08 7.45 -56.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771618993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.864 kcal (2) G-P(sol) polarization free energy of solvation -64.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds