Wall clock time and date at job start Tue Mar 31 2020 00:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31447 * 1 3 3 Si 1.86798 * 119.99811 * 2 1 4 4 H 1.48498 * 109.47493 * 270.00411 * 3 2 1 5 5 H 1.48501 * 109.47105 * 30.00307 * 3 2 1 6 6 H 1.48494 * 109.47114 * 150.00003 * 3 2 1 7 7 C 1.38756 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99600 * 359.97438 * 7 2 1 9 9 O 1.34914 * 119.99764 * 179.97438 * 7 2 1 10 10 C 1.34316 * 116.99840 * 179.97438 * 9 7 2 11 11 O 1.21212 * 119.99960 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00123 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.46940 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47000 * 179.97438 * 13 12 10 15 15 N 1.46499 * 109.47198 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99665 * 180.27868 * 15 14 13 17 17 O 1.21553 * 120.00289 * 359.72074 * 16 15 14 18 18 C 1.47841 * 119.99890 * 179.72373 * 16 15 14 19 19 C 1.40022 * 120.56277 * 179.72058 * 18 16 15 20 20 C 1.38354 * 118.28856 * 179.73560 * 19 18 16 21 21 C 1.38347 * 119.30607 * 0.55971 * 20 19 18 22 22 N 1.31934 * 121.07777 * 359.70164 * 21 20 19 23 23 C 1.31691 * 121.87654 * 359.97438 * 22 21 20 24 24 H 0.96995 * 120.00453 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46839 * 59.99970 * 12 10 9 26 26 H 1.09007 * 109.46560 * 300.00106 * 12 10 9 27 27 H 1.08995 * 109.47672 * 60.00122 * 13 12 10 28 28 H 1.09006 * 109.46819 * 299.99551 * 13 12 10 29 29 H 1.09009 * 109.46730 * 59.99606 * 14 13 12 30 30 H 1.08998 * 109.46846 * 300.00150 * 14 13 12 31 31 H 0.97001 * 119.99790 * 359.97438 * 15 14 13 32 32 H 1.08004 * 120.84891 * 359.97438 * 19 18 16 33 33 H 1.07996 * 120.34662 * 180.25955 * 20 19 18 34 34 H 1.07998 * 119.46561 * 179.71812 * 21 20 19 35 35 H 1.08003 * 119.71198 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4958 2.0466 -1.4000 5 1 1.4458 2.6526 0.7001 6 1 3.5459 1.4402 0.7000 7 6 2.0083 -1.2016 -0.0005 8 1 1.4682 -2.1370 -0.0005 9 8 3.3574 -1.2016 -0.0011 10 6 3.9672 -2.3983 -0.0010 11 8 3.3071 -3.4149 -0.0010 12 6 5.4722 -2.4771 -0.0010 13 6 5.9060 -3.9443 -0.0016 14 6 7.4339 -4.0244 -0.0022 15 7 7.8493 -5.4293 -0.0022 16 6 9.1597 -5.7445 0.0030 17 8 9.9969 -4.8631 0.0025 18 6 9.5790 -7.1622 0.0092 19 6 10.9371 -7.5030 0.0087 20 6 11.2765 -8.8442 0.0203 21 6 10.2730 -9.7967 0.0201 22 7 9.0012 -9.4460 0.0149 23 6 8.6280 -8.1831 0.0102 24 1 -0.4850 0.8400 0.0004 25 1 5.8619 -1.9830 0.8889 26 1 5.8619 -1.9830 -0.8911 27 1 5.5164 -4.4381 -0.8918 28 1 5.5162 -4.4388 0.8882 29 1 7.8240 -3.5304 0.8878 30 1 7.8233 -3.5300 -0.8922 31 1 7.1813 -6.1325 -0.0015 32 1 11.6999 -6.7385 0.0034 33 1 12.3138 -9.1446 0.0245 34 1 10.5351 -10.8444 0.0245 35 1 7.5767 -7.9356 0.0065 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772377580.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:59 Heat of formation + Delta-G solvation = -113.031095 kcal Electronic energy + Delta-G solvation = -19803.423173 eV Core-core repulsion = 16379.644430 eV Total energy + Delta-G solvation = -3423.778743 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.63155 -41.15267 -40.05432 -37.72583 -36.63153 -34.50163 -34.06688 -33.52327 -32.30210 -28.98611 -27.15860 -25.36079 -24.51792 -23.16494 -21.97945 -21.19935 -20.13276 -19.16469 -18.56137 -17.86704 -17.44895 -17.33966 -16.82361 -16.54188 -16.36239 -15.90187 -15.54998 -15.50104 -14.66169 -14.62000 -14.47729 -14.13745 -13.96861 -13.66521 -13.31540 -13.14348 -13.03123 -12.53835 -12.36361 -12.21497 -11.90898 -11.85264 -11.41269 -11.10102 -10.99888 -10.82768 -10.50089 -10.36744 -10.08554 -8.53953 -6.40861 -0.40899 0.18824 1.31803 1.35598 1.54870 1.60676 1.75957 1.93953 2.28452 2.54555 2.82559 2.92318 3.28963 3.67533 3.79176 3.84890 3.95141 3.98619 4.00175 4.04635 4.43052 4.46778 4.54480 4.64951 4.71021 4.73889 4.99182 5.09373 5.09463 5.18956 5.32374 5.51316 5.56756 5.90716 6.37494 6.56957 6.82603 6.84229 7.04329 7.61430 8.59100 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.046685 B = 0.002541 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.623131 B =11017.177441 C =11591.034062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.012 3.988 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.247 1.247 7 C -0.408 4.408 8 H 0.056 0.944 9 O -0.261 6.261 10 C 0.407 3.593 11 O -0.577 6.577 12 C -0.092 4.092 13 C -0.108 4.108 14 C 0.127 3.873 15 N -0.714 5.714 16 C 0.563 3.437 17 O -0.574 6.574 18 C -0.203 4.203 19 C -0.029 4.029 20 C -0.169 4.169 21 C 0.118 3.882 22 N -0.512 5.512 23 C 0.131 3.869 24 H 0.289 0.711 25 H 0.125 0.875 26 H 0.126 0.874 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.413 0.587 32 H 0.148 0.852 33 H 0.176 0.824 34 H 0.192 0.808 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.170 -14.433 0.037 29.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.806 3.194 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.171 1.171 7 C -0.484 4.484 8 H 0.074 0.926 9 O -0.171 6.171 10 C 0.255 3.745 11 O -0.473 6.473 12 C -0.130 4.130 13 C -0.146 4.146 14 C 0.004 3.996 15 N -0.366 5.366 16 C 0.350 3.650 17 O -0.454 6.454 18 C -0.208 4.208 19 C -0.055 4.055 20 C -0.189 4.189 21 C -0.038 4.038 22 N -0.221 5.221 23 C -0.027 4.027 24 H 0.098 0.902 25 H 0.143 0.857 26 H 0.144 0.856 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.250 0.750 32 H 0.166 0.834 33 H 0.194 0.806 34 H 0.209 0.791 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 24.718 -14.590 0.036 28.703 hybrid contribution -0.407 0.752 -0.014 0.855 sum 24.311 -13.838 0.022 27.973 Atomic orbital electron populations 1.69713 1.07674 1.30188 1.48435 1.25630 0.96012 1.02907 0.94229 0.85032 0.79055 0.75576 0.79777 1.18479 1.19311 1.17064 1.20303 0.78003 0.95639 1.54458 0.92597 1.83537 1.21794 1.33256 1.78493 1.24591 0.93449 0.81116 0.75375 1.90584 1.68895 1.37310 1.50546 1.21198 0.84441 0.99568 1.07778 1.21434 0.93946 0.94978 1.04203 1.21319 0.93276 0.81598 1.03419 1.45858 1.06886 1.09713 1.74124 1.18292 0.82513 0.88399 0.75754 1.90765 1.52403 1.50446 1.51810 1.20961 0.96545 0.93511 1.09797 1.21973 0.94932 0.98105 0.90533 1.22525 1.03280 0.92086 1.00960 1.23645 0.87248 1.02311 0.90569 1.67786 1.21147 1.19648 1.13544 1.23244 1.00336 0.87380 0.91730 0.90164 0.85719 0.85623 0.90784 0.90812 0.90450 0.90399 0.74965 0.83438 0.80612 0.79132 0.80958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.80 13.96 21.63 0.30 -55.50 16 2 C 0.01 0.68 5.49 84.87 0.47 1.15 16 3 Si 0.99 43.26 28.62 68.60 1.96 45.23 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 6 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.41 -24.97 10.10 67.94 0.69 -24.29 16 8 H 0.06 3.90 7.09 -2.91 -0.02 3.88 16 9 O -0.26 -13.57 8.58 14.88 0.13 -13.45 16 10 C 0.41 18.13 7.91 71.24 0.56 18.69 16 11 O -0.58 -30.04 15.22 20.77 0.32 -29.73 16 12 C -0.09 -2.51 5.81 29.85 0.17 -2.34 16 13 C -0.11 -2.47 4.62 30.59 0.14 -2.33 16 14 C 0.13 2.43 5.67 86.38 0.49 2.92 16 15 N -0.71 -12.93 5.51 -465.96 -2.57 -15.50 16 16 C 0.56 12.20 7.78 86.79 0.68 12.88 16 17 O -0.57 -16.36 16.42 -3.88 -0.06 -16.42 16 18 C -0.20 -3.59 5.89 -19.99 -0.12 -3.71 16 19 C -0.03 -0.43 9.72 22.73 0.22 -0.21 16 20 C -0.17 -1.60 10.10 22.32 0.23 -1.38 16 21 C 0.12 1.29 11.17 84.70 0.95 2.24 16 22 N -0.51 -8.48 10.35 -194.75 -2.01 -10.50 16 23 C 0.13 2.09 10.71 85.02 0.91 3.00 16 24 H 0.29 15.77 8.31 -92.71 -0.77 15.00 16 25 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 26 H 0.13 2.80 8.14 -2.38 -0.02 2.78 16 27 H 0.07 1.80 8.10 -2.39 -0.02 1.78 16 28 H 0.07 1.80 8.10 -2.38 -0.02 1.78 16 29 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.41 5.67 6.54 -92.71 -0.61 5.07 16 32 H 0.15 2.13 7.74 -2.91 -0.02 2.11 16 33 H 0.18 0.43 8.06 -2.91 -0.02 0.41 16 34 H 0.19 0.78 8.06 -2.91 -0.02 0.76 16 35 H 0.17 2.01 6.42 -2.91 -0.02 1.99 16 Total: -1.00 -81.97 315.92 3.96 -78.00 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.52 Total: 11.23 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 5.38 Total: 6.64 kcal Atomic # 7 Polarization: -77.22 SS G_CDS: -4.28 Total: -81.50 kcal Atomic # 8 Polarization: -59.98 SS G_CDS: 0.38 Total: -59.60 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.96 Total: 45.23 kcal Total: -81.97 3.96 -78.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772377580.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.028 kcal (2) G-P(sol) polarization free energy of solvation -81.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds