Wall clock time and date at job start Mon Mar 30 2020 23:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86803 * 119.99628 * 2 1 4 4 H 1.48503 * 109.46808 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47133 * 299.99820 * 3 2 1 6 6 H 1.48498 * 109.47175 * 60.00368 * 3 2 1 7 7 C 1.38758 * 120.00350 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00005 * 179.97438 * 7 2 1 9 9 O 1.34913 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.34309 * 117.00274 * 179.97438 * 9 7 2 11 11 O 1.21213 * 119.99896 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00446 * 180.02562 * 10 9 7 13 13 C 1.53008 * 112.85009 * 309.66612 * 12 10 9 14 14 C 1.50699 * 109.46778 * 50.32863 * 13 12 10 15 15 C 1.38265 * 119.99210 * 269.98076 * 14 13 12 16 16 C 1.38223 * 120.05406 * 179.97438 * 15 14 13 17 17 C 1.38223 * 120.02411 * 0.02562 * 16 15 14 18 18 C 1.38437 * 119.97448 * 359.74760 * 17 16 15 19 19 F 1.35099 * 120.02356 * 180.27548 * 18 17 16 20 20 C 1.38183 * 119.98467 * 90.00809 * 14 13 12 21 21 C 1.53784 * 113.61766 * 80.86082 * 12 10 9 22 22 C 1.53951 * 87.01828 * 89.23292 * 21 12 10 23 23 C 1.53773 * 87.11543 * 25.36510 * 22 21 12 24 24 H 0.96996 * 120.00619 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46647 * 290.33368 * 13 12 10 26 26 H 1.08992 * 109.47295 * 170.33039 * 13 12 10 27 27 H 1.08004 * 119.96758 * 359.97438 * 15 14 13 28 28 H 1.08000 * 119.98736 * 180.02562 * 16 15 14 29 29 H 1.08001 * 120.01045 * 180.02562 * 17 16 15 30 30 H 1.08002 * 120.01017 * 359.97438 * 20 14 13 31 31 H 1.09004 * 113.61629 * 203.75316 * 21 12 10 32 32 H 1.09001 * 113.61162 * 334.65326 * 21 12 10 33 33 H 1.09004 * 113.53493 * 270.80895 * 22 21 12 34 34 H 1.08997 * 113.74376 * 139.94618 * 22 21 12 35 35 H 1.08996 * 113.61537 * 220.09250 * 23 22 21 36 36 H 1.09002 * 113.61450 * 89.18585 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.7083 1.3465 -0.0006 5 1 1.8895 2.3965 -1.2125 6 1 1.8896 2.3965 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0001 9 8 1.3337 -2.3701 0.0005 10 6 2.0652 -3.4965 0.0005 11 8 3.2757 -3.4330 0.0001 12 6 1.3812 -4.8392 0.0000 13 6 0.3091 -4.9604 1.0849 14 6 -0.6137 -3.7711 1.0142 15 6 -0.3311 -2.6325 1.7460 16 6 -1.1763 -1.5407 1.6816 17 6 -2.3056 -1.5862 0.8858 18 6 -2.5871 -2.7240 0.1490 19 9 -3.6876 -2.7675 -0.6334 20 6 -1.7423 -3.8191 0.2184 21 6 0.9026 -5.2863 -1.3915 22 6 2.2874 -5.9345 -1.5710 23 6 2.3566 -6.0276 -0.0376 24 1 -0.4851 0.8400 0.0004 25 1 0.7858 -4.9926 2.0646 26 1 -0.2637 -5.8745 0.9292 27 1 0.5509 -2.5963 2.3683 28 1 -0.9543 -0.6518 2.2533 29 1 -2.9656 -0.7329 0.8354 30 1 -1.9629 -4.7086 -0.3531 31 1 0.0843 -6.0058 -1.3615 32 1 0.7150 -4.4585 -2.0754 33 1 3.0300 -5.2626 -2.0016 34 1 2.2569 -6.9049 -2.0664 35 1 3.3410 -5.7974 0.3698 36 1 1.9366 -6.9501 0.3632 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775069598.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:54 Heat of formation + Delta-G solvation = -75.087021 kcal Electronic energy + Delta-G solvation = -22739.807512 eV Core-core repulsion = 19297.754185 eV Total energy + Delta-G solvation = -3442.053326 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.07774 -40.17968 -37.88384 -37.47245 -34.79285 -32.47236 -31.71492 -29.56424 -27.73430 -25.66541 -25.18451 -23.66986 -22.00503 -21.29532 -20.42811 -18.41597 -17.64161 -16.56567 -15.96876 -15.53426 -15.36388 -15.01293 -14.92552 -14.67581 -14.37408 -13.82238 -13.46579 -13.24360 -12.96302 -12.61916 -12.23510 -12.12107 -11.83691 -11.68484 -11.29416 -11.20461 -10.91347 -10.71060 -10.58147 -10.43898 -10.38998 -10.23785 -9.87223 -9.79125 -9.68251 -8.88621 -8.57542 -7.87580 -7.50255 -6.28586 -4.03556 2.22073 2.30026 3.07509 3.19118 3.24333 3.53203 3.93324 4.49890 4.60353 4.85518 4.94571 5.13287 5.16326 5.21795 5.38886 5.58483 5.66570 5.82399 5.86800 5.93275 6.02641 6.02777 6.11194 6.23887 6.27482 6.44529 6.47039 6.55879 6.60720 6.82985 6.98120 7.04114 7.08361 7.36280 7.42648 7.53511 7.94199 7.97501 8.76138 9.10153 9.92426 10.75622 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013078 B = 0.010338 C = 0.006557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.441432 B = 2707.812589 C = 4269.287891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.046 3.954 3 Si 0.932 3.068 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.379 4.379 8 H 0.089 0.911 9 O -0.190 6.190 10 C 0.417 3.583 11 O -0.557 6.557 12 C -0.063 4.063 13 C -0.058 4.058 14 C -0.056 4.056 15 C -0.079 4.079 16 C -0.001 4.001 17 C -0.135 4.135 18 C 0.082 3.918 19 F -0.159 7.159 20 C -0.164 4.164 21 C -0.121 4.121 22 C -0.140 4.140 23 C -0.121 4.121 24 H 0.265 0.735 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.107 0.893 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.504 -7.611 2.372 8.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.157 4.157 3 Si 0.758 3.242 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.456 4.456 8 H 0.107 0.893 9 O -0.096 6.096 10 C 0.263 3.737 11 O -0.455 6.455 12 C -0.064 4.064 13 C -0.095 4.095 14 C -0.056 4.056 15 C -0.097 4.097 16 C -0.020 4.020 17 C -0.154 4.154 18 C 0.063 3.937 19 F -0.138 7.138 20 C -0.183 4.183 21 C -0.158 4.158 22 C -0.178 4.178 23 C -0.158 4.158 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.125 0.875 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.406 -7.394 2.326 8.466 hybrid contribution 0.434 1.104 -0.452 1.269 sum -2.972 -6.290 1.874 7.204 Atomic orbital electron populations 1.70043 1.05211 1.26581 1.46360 1.25159 0.95799 0.98188 0.96581 0.85765 0.79592 0.80890 0.77950 1.19340 1.20489 1.20390 1.21265 0.92283 0.80444 1.51588 0.89285 1.84163 1.38071 1.12689 1.74687 1.22431 0.86114 0.86666 0.78489 1.90535 1.15756 1.87922 1.51260 1.21469 0.96121 0.91556 0.97285 1.20487 0.94554 0.96257 0.98231 1.19207 0.94127 0.95543 0.96697 1.20602 0.97319 0.92728 0.99098 1.20328 0.91026 0.95552 0.95137 1.20622 0.99921 0.95872 0.98964 1.17515 0.85258 0.96406 0.94532 1.91385 1.52010 1.97119 1.73332 1.20471 0.96581 0.97975 1.03248 1.22958 0.97050 1.00373 0.95455 1.22854 0.97777 1.00618 0.96527 1.22875 1.00043 0.96107 0.96788 0.92465 0.90912 0.90624 0.87466 0.86940 0.86937 0.86824 0.89562 0.90871 0.89919 0.91652 0.90147 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.58 9.61 55.48 0.53 -21.05 16 2 C 0.05 1.20 5.49 -17.53 -0.10 1.10 16 3 Si 0.93 20.44 29.55 -169.99 -5.02 15.42 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 7 C -0.38 -10.46 9.64 30.92 0.30 -10.16 16 8 H 0.09 2.58 6.86 -52.49 -0.36 2.22 16 9 O -0.19 -4.94 5.34 -20.68 -0.11 -5.05 16 10 C 0.42 9.93 6.52 36.00 0.23 10.16 16 11 O -0.56 -14.72 15.07 -19.05 -0.29 -15.01 16 12 C -0.06 -1.14 0.97 -154.84 -0.15 -1.29 16 13 C -0.06 -0.94 4.87 -27.88 -0.14 -1.07 16 14 C -0.06 -1.05 4.02 -104.63 -0.42 -1.47 16 15 C -0.08 -1.61 6.61 -39.58 -0.26 -1.87 16 16 C 0.00 -0.02 6.99 -39.59 -0.28 -0.30 16 17 C -0.13 -2.69 9.41 -39.51 -0.37 -3.06 16 18 C 0.08 1.63 7.30 -39.42 -0.29 1.34 16 19 F -0.16 -3.12 17.27 2.25 0.04 -3.08 16 20 C -0.16 -3.07 9.68 -39.51 -0.38 -3.45 16 21 C -0.12 -1.97 7.20 -25.83 -0.19 -2.15 16 22 C -0.14 -2.14 7.76 -25.83 -0.20 -2.34 16 23 C -0.12 -1.86 7.02 -25.92 -0.18 -2.04 16 24 H 0.26 6.40 8.31 -40.82 -0.34 6.06 16 25 H 0.07 1.12 8.09 -51.93 -0.42 0.70 16 26 H 0.08 1.00 7.92 -51.93 -0.41 0.59 16 27 H 0.11 2.23 8.04 -52.48 -0.42 1.81 16 28 H 0.11 2.25 7.94 -52.49 -0.42 1.83 16 29 H 0.11 2.09 8.06 -52.49 -0.42 1.67 16 30 H 0.11 1.88 8.06 -52.49 -0.42 1.45 16 31 H 0.09 1.16 7.99 -51.93 -0.41 0.75 16 32 H 0.07 1.36 8.09 -51.93 -0.42 0.94 16 33 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.37 7.41 -51.93 -0.38 0.99 16 36 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 302.78 15.07 4.56 4.56 Total: -1.00 -29.39 302.78 -7.20 -36.59 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.50 Total: 4.23 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -2.42 Total: -16.61 kcal Atomic # 7 Polarization: -21.58 SS G_CDS: 0.53 Total: -21.05 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.40 Total: -20.06 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.04 Total: -3.08 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.39 -7.20 -36.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775069598.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.498 kcal (2) G-P(sol) polarization free energy of solvation -29.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds