Wall clock time and date at job start Mon Mar 30 2020 23:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86803 * 119.99628 * 2 1 4 4 H 1.48503 * 109.46808 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47133 * 299.99820 * 3 2 1 6 6 H 1.48498 * 109.47175 * 60.00368 * 3 2 1 7 7 C 1.38758 * 120.00350 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00005 * 179.97438 * 7 2 1 9 9 O 1.34913 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.34309 * 117.00274 * 179.97438 * 9 7 2 11 11 O 1.21213 * 119.99896 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00446 * 180.02562 * 10 9 7 13 13 C 1.53008 * 112.85009 * 309.66612 * 12 10 9 14 14 C 1.50699 * 109.46778 * 50.32863 * 13 12 10 15 15 C 1.38265 * 119.99210 * 269.98076 * 14 13 12 16 16 C 1.38223 * 120.05406 * 179.97438 * 15 14 13 17 17 C 1.38223 * 120.02411 * 0.02562 * 16 15 14 18 18 C 1.38437 * 119.97448 * 359.74760 * 17 16 15 19 19 F 1.35099 * 120.02356 * 180.27548 * 18 17 16 20 20 C 1.38183 * 119.98467 * 90.00809 * 14 13 12 21 21 C 1.53784 * 113.61766 * 80.86082 * 12 10 9 22 22 C 1.53951 * 87.01828 * 89.23292 * 21 12 10 23 23 C 1.53773 * 87.11543 * 25.36510 * 22 21 12 24 24 H 0.96996 * 120.00619 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46647 * 290.33368 * 13 12 10 26 26 H 1.08992 * 109.47295 * 170.33039 * 13 12 10 27 27 H 1.08004 * 119.96758 * 359.97438 * 15 14 13 28 28 H 1.08000 * 119.98736 * 180.02562 * 16 15 14 29 29 H 1.08001 * 120.01045 * 180.02562 * 17 16 15 30 30 H 1.08002 * 120.01017 * 359.97438 * 20 14 13 31 31 H 1.09004 * 113.61629 * 203.75316 * 21 12 10 32 32 H 1.09001 * 113.61162 * 334.65326 * 21 12 10 33 33 H 1.09004 * 113.53493 * 270.80895 * 22 21 12 34 34 H 1.08997 * 113.74376 * 139.94618 * 22 21 12 35 35 H 1.08996 * 113.61537 * 220.09250 * 23 22 21 36 36 H 1.09002 * 113.61450 * 89.18585 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.7083 1.3465 -0.0006 5 1 1.8895 2.3965 -1.2125 6 1 1.8896 2.3965 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0001 9 8 1.3337 -2.3701 0.0005 10 6 2.0652 -3.4965 0.0005 11 8 3.2757 -3.4330 0.0001 12 6 1.3812 -4.8392 0.0000 13 6 0.3091 -4.9604 1.0849 14 6 -0.6137 -3.7711 1.0142 15 6 -0.3311 -2.6325 1.7460 16 6 -1.1763 -1.5407 1.6816 17 6 -2.3056 -1.5862 0.8858 18 6 -2.5871 -2.7240 0.1490 19 9 -3.6876 -2.7675 -0.6334 20 6 -1.7423 -3.8191 0.2184 21 6 0.9026 -5.2863 -1.3915 22 6 2.2874 -5.9345 -1.5710 23 6 2.3566 -6.0276 -0.0376 24 1 -0.4851 0.8400 0.0004 25 1 0.7858 -4.9926 2.0646 26 1 -0.2637 -5.8745 0.9292 27 1 0.5509 -2.5963 2.3683 28 1 -0.9543 -0.6518 2.2533 29 1 -2.9656 -0.7329 0.8354 30 1 -1.9629 -4.7086 -0.3531 31 1 0.0843 -6.0058 -1.3615 32 1 0.7150 -4.4585 -2.0754 33 1 3.0300 -5.2626 -2.0016 34 1 2.2569 -6.9049 -2.0664 35 1 3.3410 -5.7974 0.3698 36 1 1.9366 -6.9501 0.3632 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775069598.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:54 Heat of formation + Delta-G solvation = -89.331492 kcal Electronic energy + Delta-G solvation = -22740.425198 eV Core-core repulsion = 19297.754185 eV Total energy + Delta-G solvation = -3442.671013 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.61737 -41.77491 -39.51722 -39.04002 -36.72981 -34.30130 -33.31515 -31.09457 -29.21790 -27.49503 -26.51809 -25.22357 -23.55349 -22.89280 -21.85410 -20.05341 -19.64700 -18.10861 -17.67357 -17.14348 -16.92841 -16.54140 -16.52166 -16.23518 -16.19850 -15.37797 -15.10829 -14.74130 -14.43992 -14.13956 -13.87842 -13.69294 -13.28680 -13.17674 -13.00304 -12.69444 -12.53319 -12.24752 -12.21919 -12.14315 -11.86478 -11.73970 -11.70538 -11.19115 -11.11345 -10.73398 -10.52898 -9.44222 -9.06342 -8.23697 -6.11321 0.66747 0.77441 1.30748 1.36739 1.48394 1.72536 2.15765 2.83357 3.02133 3.14967 3.50193 3.66522 3.69522 3.93176 4.07574 4.15297 4.23803 4.40400 4.53624 4.61019 4.65369 4.83000 4.84170 4.89423 4.96981 5.04029 5.06007 5.18363 5.22735 5.29587 5.36053 5.47758 5.54523 5.60725 5.82485 5.96647 5.99648 6.41251 6.82796 7.07081 7.95632 8.76417 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013078 B = 0.010338 C = 0.006557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.441432 B = 2707.812589 C = 4269.287891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.018 3.982 3 Si 0.991 3.009 4 H -0.280 1.280 5 H -0.271 1.271 6 H -0.261 1.261 7 C -0.420 4.420 8 H 0.061 0.939 9 O -0.199 6.199 10 C 0.406 3.594 11 O -0.595 6.595 12 C -0.074 4.074 13 C -0.054 4.054 14 C -0.056 4.056 15 C -0.094 4.094 16 C -0.012 4.012 17 C -0.144 4.144 18 C 0.068 3.932 19 F -0.158 7.158 20 C -0.160 4.160 21 C -0.114 4.114 22 C -0.138 4.138 23 C -0.108 4.108 24 H 0.271 0.729 25 H 0.078 0.922 26 H 0.123 0.877 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.120 0.880 30 H 0.145 0.855 31 H 0.131 0.869 32 H 0.041 0.959 33 H 0.046 0.954 34 H 0.105 0.895 35 H 0.055 0.945 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.720 -9.581 2.112 10.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.185 4.185 3 Si 0.814 3.186 4 H -0.205 1.205 5 H -0.196 1.196 6 H -0.186 1.186 7 C -0.496 4.496 8 H 0.078 0.922 9 O -0.106 6.106 10 C 0.254 3.746 11 O -0.495 6.495 12 C -0.075 4.075 13 C -0.091 4.091 14 C -0.057 4.057 15 C -0.112 4.112 16 C -0.032 4.032 17 C -0.163 4.163 18 C 0.049 3.951 19 F -0.137 7.137 20 C -0.179 4.179 21 C -0.151 4.151 22 C -0.175 4.175 23 C -0.145 4.145 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.141 0.859 27 H 0.110 0.890 28 H 0.124 0.876 29 H 0.138 0.862 30 H 0.163 0.837 31 H 0.149 0.851 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.123 0.877 35 H 0.074 0.926 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.651 -9.373 2.072 10.667 hybrid contribution 0.813 1.710 -0.377 1.930 sum -3.838 -7.663 1.695 8.737 Atomic orbital electron populations 1.70130 1.05794 1.27675 1.45001 1.25886 0.96803 1.00315 0.95494 0.84921 0.77702 0.77221 0.78743 1.20502 1.19586 1.18606 1.21157 0.91358 0.82079 1.55004 0.92154 1.84181 1.38216 1.12923 1.75240 1.23778 0.86145 0.88214 0.76453 1.90499 1.17646 1.88667 1.52647 1.21662 0.97491 0.88796 0.99524 1.20613 0.93747 0.96870 0.97855 1.19505 0.94532 0.95909 0.95712 1.20642 0.96908 0.93850 0.99841 1.20314 0.91597 0.95571 0.95674 1.20729 0.99939 0.96532 0.99075 1.17732 0.85706 0.96936 0.94750 1.91384 1.51943 1.97138 1.73250 1.20791 0.95770 0.98579 1.02753 1.23061 0.98905 1.00195 0.92941 1.22807 0.96195 1.01684 0.96828 1.22967 0.98328 0.96472 0.96758 0.91852 0.90327 0.85893 0.89048 0.87623 0.86216 0.83747 0.85127 0.94041 0.93534 0.87653 0.92587 0.84852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -43.85 9.61 21.63 0.21 -43.64 16 2 C 0.02 0.97 5.49 84.88 0.47 1.44 16 3 Si 0.99 42.51 29.55 68.60 2.03 44.54 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 7 C -0.42 -24.18 9.64 67.94 0.65 -23.52 16 8 H 0.06 3.74 6.86 -2.91 -0.02 3.72 16 9 O -0.20 -10.70 5.34 14.96 0.08 -10.62 16 10 C 0.41 19.81 6.52 71.23 0.46 20.28 16 11 O -0.59 -32.93 15.07 20.77 0.31 -32.62 16 12 C -0.07 -2.53 0.97 -52.40 -0.05 -2.58 16 13 C -0.05 -1.57 4.87 29.85 0.15 -1.42 16 14 C -0.06 -2.03 4.02 -19.87 -0.08 -2.11 16 15 C -0.09 -3.87 6.61 22.27 0.15 -3.72 16 16 C -0.01 -0.51 6.99 22.26 0.16 -0.35 16 17 C -0.14 -5.72 9.41 22.31 0.21 -5.51 16 18 C 0.07 2.61 7.30 22.38 0.16 2.77 16 19 F -0.16 -5.93 17.27 44.97 0.78 -5.15 16 20 C -0.16 -5.59 9.68 22.31 0.22 -5.38 16 21 C -0.11 -3.35 7.20 31.18 0.22 -3.13 16 22 C -0.14 -3.85 7.76 31.18 0.24 -3.61 16 23 C -0.11 -3.00 7.02 31.12 0.22 -2.78 16 24 H 0.27 13.06 8.31 -92.71 -0.77 12.29 16 25 H 0.08 2.20 8.09 -2.39 -0.02 2.18 16 26 H 0.12 2.47 7.92 -2.39 -0.02 2.45 16 27 H 0.09 3.97 8.04 -2.91 -0.02 3.95 16 28 H 0.11 4.38 7.94 -2.91 -0.02 4.36 16 29 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 30 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 31 H 0.13 2.72 7.99 -2.38 -0.02 2.70 16 32 H 0.04 1.48 8.09 -2.39 -0.02 1.46 16 33 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.11 2.11 8.14 -2.39 -0.02 2.10 16 35 H 0.06 1.85 7.41 -2.39 -0.02 1.83 16 36 H 0.13 2.44 8.10 -2.39 -0.02 2.43 16 Total: -1.00 -67.19 302.78 7.67 -59.52 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 1.08 Total: 17.59 kcal Atomic # 6 Polarization: -32.80 SS G_CDS: 3.18 Total: -29.62 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.21 Total: -43.64 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: 0.39 Total: -43.24 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.78 Total: -5.15 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -67.19 7.67 -59.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775069598.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.809 kcal (2) G-P(sol) polarization free energy of solvation -67.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds