Wall clock time and date at job start Mon Mar 30 2020 23:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86803 * 119.99877 * 2 1 4 4 H 1.48495 * 109.47432 * 89.99547 * 3 2 1 5 5 H 1.48498 * 109.46929 * 210.00063 * 3 2 1 6 6 H 1.48504 * 109.46998 * 329.99680 * 3 2 1 7 7 C 1.39938 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99969 * 17.10260 * 7 2 1 9 9 C 1.41393 * 120.00244 * 197.10039 * 7 2 1 10 10 C 1.40730 * 120.24523 * 29.34807 * 9 7 2 11 11 C 1.37598 * 119.75045 * 180.02562 * 10 9 7 12 12 C 1.38655 * 120.24576 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50174 * 359.97438 * 12 11 10 14 14 C 1.37640 * 120.24862 * 359.67182 * 13 12 11 15 15 C 1.50700 * 120.13180 * 180.32332 * 14 13 12 16 16 C 1.50701 * 109.46813 * 265.30632 * 15 14 13 17 17 O 1.21280 * 120.00223 * 359.97438 * 16 15 14 18 18 N 1.34784 * 119.99906 * 180.02562 * 16 15 14 19 19 O 1.41590 * 119.99878 * 180.02562 * 18 16 15 20 20 C 1.42900 * 114.00124 * 179.97438 * 19 18 16 21 21 C 1.50697 * 109.47601 * 179.97438 * 20 19 18 22 22 N 1.34781 * 120.00357 * 180.02562 * 21 20 19 23 23 O 1.21280 * 119.99873 * 359.97438 * 21 20 19 24 24 H 0.97004 * 119.99819 * 175.46146 * 1 2 3 25 25 H 1.08003 * 120.12932 * 359.97438 * 10 9 7 26 26 H 1.08002 * 119.87930 * 180.02562 * 11 10 9 27 27 H 1.08001 * 119.75352 * 179.97438 * 12 11 10 28 28 H 1.08005 * 119.87936 * 179.97438 * 13 12 11 29 29 H 1.08999 * 109.46812 * 25.30470 * 15 14 13 30 30 H 1.08998 * 109.47079 * 145.30506 * 15 14 13 31 31 H 0.96998 * 119.99931 * 359.97438 * 18 16 15 32 32 H 1.09001 * 109.46854 * 299.99836 * 20 19 18 33 33 H 1.09004 * 109.47161 * 59.99215 * 20 19 18 34 34 H 0.97006 * 119.99500 * 359.97438 * 22 21 20 35 35 H 0.96993 * 120.00266 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0466 1.4000 5 1 3.5397 1.4402 -0.7000 6 1 1.4396 2.6527 -0.7001 7 6 2.0080 -1.2119 0.0005 8 1 1.5038 -2.1266 -0.2741 9 6 3.3750 -1.2388 0.3606 10 6 3.8884 -0.2916 1.2660 11 6 5.2205 -0.3268 1.6089 12 6 6.0563 -1.2905 1.0655 13 6 5.5616 -2.2284 0.1728 14 6 4.2309 -2.2166 -0.1789 15 6 3.6944 -3.2420 -1.1441 16 6 3.7033 -2.6718 -2.5390 17 8 4.1053 -1.5437 -2.7305 18 7 3.2636 -3.4153 -3.5738 19 8 3.2725 -2.8797 -4.8845 20 6 2.7802 -3.7765 -5.8822 21 6 2.8343 -3.1064 -7.2308 22 7 2.4166 -3.7670 -8.3289 23 8 3.2527 -1.9722 -7.3281 24 1 -0.4850 -0.8375 -0.0665 25 1 3.2394 0.4608 1.6895 26 1 5.6165 0.3989 2.3039 27 1 7.1007 -1.3106 1.3399 28 1 6.2217 -2.9744 -0.2447 29 1 4.3205 -4.1337 -1.1120 30 1 2.6739 -3.5044 -0.8653 31 1 2.9418 -4.3174 -3.4206 32 1 3.3960 -4.6758 -5.8980 33 1 1.7495 -4.0460 -5.6517 34 1 2.0816 -4.6741 -8.2510 35 1 2.4518 -3.3358 -9.1970 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777531377.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:45 Heat of formation + Delta-G solvation = -49.566935 kcal Electronic energy + Delta-G solvation = -21038.156404 eV Core-core repulsion = 17617.129674 eV Total energy + Delta-G solvation = -3421.026731 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.79443 -39.06767 -37.68199 -36.54222 -34.03173 -33.63344 -32.38734 -31.38533 -30.12662 -28.05929 -26.55064 -24.47124 -21.51566 -21.31959 -20.73086 -19.39618 -18.34335 -18.04065 -17.67780 -16.74681 -16.30627 -16.10363 -15.38833 -14.97708 -14.36273 -14.24615 -14.10474 -13.81193 -13.43540 -13.38210 -12.73402 -12.47140 -12.10304 -11.90238 -11.50983 -11.23092 -11.02134 -10.73728 -10.31415 -10.24878 -10.10665 -10.05705 -9.65774 -9.28349 -9.23203 -8.92001 -8.61890 -7.62706 -7.57949 -7.14622 -4.47345 1.81342 2.29928 2.67983 2.79351 3.29768 3.32466 3.34038 3.51933 3.74365 4.15418 4.45239 4.62934 4.69543 4.73488 4.79846 5.24913 5.55217 5.75633 5.84829 6.08870 6.16423 6.23518 6.40323 6.54977 6.77507 6.85382 7.03481 7.08774 7.37383 7.53247 7.67249 7.70638 7.76902 7.87918 7.92632 8.03504 8.42655 8.63092 8.83287 8.85684 10.11421 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018324 B = 0.005022 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.642643 B = 5574.174634 C = 6364.775609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.048 3.952 3 Si 1.068 2.932 4 H -0.279 1.279 5 H -0.257 1.257 6 H -0.292 1.292 7 C -0.513 4.513 8 H 0.075 0.925 9 C 0.117 3.883 10 C -0.244 4.244 11 C -0.073 4.073 12 C -0.246 4.246 13 C -0.063 4.063 14 C -0.180 4.180 15 C -0.052 4.052 16 C 0.525 3.475 17 O -0.489 6.489 18 N -0.611 5.611 19 O -0.124 6.124 20 C 0.012 3.988 21 C 0.523 3.477 22 N -0.852 5.852 23 O -0.511 6.511 24 H 0.283 0.717 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.400 0.600 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.402 0.598 35 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.969 -13.400 -10.027 16.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.170 4.170 3 Si 0.895 3.105 4 H -0.206 1.206 5 H -0.181 1.181 6 H -0.219 1.219 7 C -0.541 4.541 8 H 0.093 0.907 9 C 0.114 3.886 10 C -0.263 4.263 11 C -0.092 4.092 12 C -0.265 4.265 13 C -0.081 4.081 14 C -0.182 4.182 15 C -0.092 4.092 16 C 0.312 3.688 17 O -0.358 6.358 18 N -0.318 5.318 19 O -0.126 6.126 20 C -0.070 4.070 21 C 0.305 3.695 22 N -0.419 5.419 23 O -0.384 6.384 24 H 0.094 0.906 25 H 0.123 0.877 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.239 0.761 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.230 0.770 35 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 2.351 -9.958 -10.010 14.314 hybrid contribution -0.495 -2.818 -0.646 2.933 sum 1.856 -12.776 -10.656 16.740 Atomic orbital electron populations 1.70579 1.08038 1.32686 1.33052 1.27156 0.95525 1.04463 0.89902 0.83668 0.76322 0.73086 0.77416 1.20599 1.18086 1.21936 1.20539 0.94853 0.96414 1.42331 0.90673 1.17500 0.92841 0.89806 0.88439 1.21145 0.95716 1.04818 1.04591 1.20627 0.93848 0.96790 0.97890 1.20331 0.98120 1.01331 1.06756 1.20432 0.93915 0.97280 0.96496 1.18918 0.93481 1.02685 1.03069 1.20192 1.03395 0.97931 0.87698 1.21514 0.76654 0.86329 0.84271 1.90742 1.43726 1.17992 1.83361 1.48152 1.70937 1.17345 0.95398 1.90785 1.86261 1.30744 1.04823 1.22573 1.01505 0.94842 0.88055 1.19956 0.77489 0.86397 0.85640 1.43635 1.68922 1.19573 1.09819 1.90867 1.43669 1.17745 1.86118 0.90620 0.87683 0.88788 0.88897 0.89010 0.89850 0.88402 0.76111 0.89263 0.89138 0.76987 0.76051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.75 13.65 55.55 0.76 -21.99 16 2 C 0.05 1.33 5.42 -17.34 -0.09 1.24 16 3 Si 1.07 26.78 24.89 -169.99 -4.23 22.55 16 4 H -0.28 -6.48 6.44 56.52 0.36 -6.11 16 5 H -0.26 -6.77 7.02 56.52 0.40 -6.38 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.51 -13.83 8.80 -37.75 -0.33 -14.16 16 8 H 0.08 1.99 6.60 -52.49 -0.35 1.64 16 9 C 0.12 3.04 5.13 -106.82 -0.55 2.49 16 10 C -0.24 -6.14 7.26 -38.87 -0.28 -6.42 16 11 C -0.07 -1.66 10.02 -39.66 -0.40 -2.06 16 12 C -0.25 -5.33 10.05 -39.29 -0.39 -5.73 16 13 C -0.06 -1.36 9.66 -39.66 -0.38 -1.75 16 14 C -0.18 -4.16 4.43 -103.91 -0.46 -4.62 16 15 C -0.05 -0.97 5.36 -29.03 -0.16 -1.12 16 16 C 0.52 10.91 7.97 -10.98 -0.09 10.82 16 17 O -0.49 -13.11 16.44 -12.64 -0.21 -13.32 16 18 N -0.61 -9.79 6.39 31.22 0.20 -9.59 16 19 O -0.12 -2.19 10.64 -40.35 -0.43 -2.62 16 20 C 0.01 0.12 6.71 36.00 0.24 0.36 16 21 C 0.52 6.23 8.18 -10.98 -0.09 6.14 16 22 N -0.85 -5.24 8.87 31.22 0.28 -4.96 16 23 O -0.51 -9.33 17.34 -14.35 -0.25 -9.58 16 24 H 0.28 7.51 8.73 -40.82 -0.36 7.15 16 25 H 0.11 2.63 4.43 -52.48 -0.23 2.40 16 26 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 27 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 28 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 29 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 30 H 0.10 1.74 6.51 -51.93 -0.34 1.40 16 31 H 0.40 4.21 8.54 -40.82 -0.35 3.86 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.40 0.91 8.83 -40.82 -0.36 0.55 16 35 H 0.41 2.19 8.93 -40.82 -0.36 1.82 16 LS Contribution 308.87 15.07 4.65 4.65 Total: -1.00 -38.89 308.87 -5.93 -44.82 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -3.72 Total: 4.83 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -2.98 Total: -14.79 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 1.24 Total: -36.54 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.89 Total: -25.52 kcal Atomic # 14 Polarization: 26.78 SS G_CDS: -4.23 Total: 22.55 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -38.89 -5.93 -44.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777531377.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.752 kcal (2) G-P(sol) polarization free energy of solvation -38.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds