Wall clock time and date at job start Mon Mar 30 2020 23:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86803 * 119.99877 * 2 1 4 4 H 1.48495 * 109.47432 * 89.99547 * 3 2 1 5 5 H 1.48498 * 109.46929 * 210.00063 * 3 2 1 6 6 H 1.48504 * 109.46998 * 329.99680 * 3 2 1 7 7 C 1.39938 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99969 * 17.10260 * 7 2 1 9 9 C 1.41393 * 120.00244 * 197.10039 * 7 2 1 10 10 C 1.40730 * 120.24523 * 29.34807 * 9 7 2 11 11 C 1.37598 * 119.75045 * 180.02562 * 10 9 7 12 12 C 1.38655 * 120.24576 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50174 * 359.97438 * 12 11 10 14 14 C 1.37640 * 120.24862 * 359.67182 * 13 12 11 15 15 C 1.50700 * 120.13180 * 180.32332 * 14 13 12 16 16 C 1.50701 * 109.46813 * 265.30632 * 15 14 13 17 17 O 1.21280 * 120.00223 * 359.97438 * 16 15 14 18 18 N 1.34784 * 119.99906 * 180.02562 * 16 15 14 19 19 O 1.41590 * 119.99878 * 180.02562 * 18 16 15 20 20 C 1.42900 * 114.00124 * 179.97438 * 19 18 16 21 21 C 1.50697 * 109.47601 * 179.97438 * 20 19 18 22 22 N 1.34781 * 120.00357 * 180.02562 * 21 20 19 23 23 O 1.21280 * 119.99873 * 359.97438 * 21 20 19 24 24 H 0.97004 * 119.99819 * 175.46146 * 1 2 3 25 25 H 1.08003 * 120.12932 * 359.97438 * 10 9 7 26 26 H 1.08002 * 119.87930 * 180.02562 * 11 10 9 27 27 H 1.08001 * 119.75352 * 179.97438 * 12 11 10 28 28 H 1.08005 * 119.87936 * 179.97438 * 13 12 11 29 29 H 1.08999 * 109.46812 * 25.30470 * 15 14 13 30 30 H 1.08998 * 109.47079 * 145.30506 * 15 14 13 31 31 H 0.96998 * 119.99931 * 359.97438 * 18 16 15 32 32 H 1.09001 * 109.46854 * 299.99836 * 20 19 18 33 33 H 1.09004 * 109.47161 * 59.99215 * 20 19 18 34 34 H 0.97006 * 119.99500 * 359.97438 * 22 21 20 35 35 H 0.96993 * 120.00266 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0466 1.4000 5 1 3.5397 1.4402 -0.7000 6 1 1.4396 2.6527 -0.7001 7 6 2.0080 -1.2119 0.0005 8 1 1.5038 -2.1266 -0.2741 9 6 3.3750 -1.2388 0.3606 10 6 3.8884 -0.2916 1.2660 11 6 5.2205 -0.3268 1.6089 12 6 6.0563 -1.2905 1.0655 13 6 5.5616 -2.2284 0.1728 14 6 4.2309 -2.2166 -0.1789 15 6 3.6944 -3.2420 -1.1441 16 6 3.7033 -2.6718 -2.5390 17 8 4.1053 -1.5437 -2.7305 18 7 3.2636 -3.4153 -3.5738 19 8 3.2725 -2.8797 -4.8845 20 6 2.7802 -3.7765 -5.8822 21 6 2.8343 -3.1064 -7.2308 22 7 2.4166 -3.7670 -8.3289 23 8 3.2527 -1.9722 -7.3281 24 1 -0.4850 -0.8375 -0.0665 25 1 3.2394 0.4608 1.6895 26 1 5.6165 0.3989 2.3039 27 1 7.1007 -1.3106 1.3399 28 1 6.2217 -2.9744 -0.2447 29 1 4.3205 -4.1337 -1.1120 30 1 2.6739 -3.5044 -0.8653 31 1 2.9418 -4.3174 -3.4206 32 1 3.3960 -4.6758 -5.8980 33 1 1.7495 -4.0460 -5.6517 34 1 2.0816 -4.6741 -8.2510 35 1 2.4518 -3.3358 -9.1970 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777531377.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:44 Heat of formation + Delta-G solvation = -81.322902 kcal Electronic energy + Delta-G solvation = -21039.533446 eV Core-core repulsion = 17617.129674 eV Total energy + Delta-G solvation = -3422.403773 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.90220 -40.54153 -39.32395 -37.92617 -35.58579 -34.86891 -33.96257 -32.88305 -31.98164 -29.17701 -28.03357 -26.32976 -23.28152 -22.55343 -22.07219 -21.00448 -20.02531 -19.43522 -18.59547 -17.85033 -17.42588 -17.29786 -17.07534 -16.57489 -16.02631 -15.67556 -15.55302 -15.39645 -14.95590 -14.78967 -14.38547 -13.89614 -13.84526 -13.67798 -13.08143 -12.87778 -12.61413 -12.23180 -12.16151 -11.94931 -11.58018 -11.36979 -11.13334 -10.91278 -10.84106 -10.82295 -9.96587 -9.54427 -9.34199 -9.13334 -6.46964 0.53335 0.92363 1.00615 1.30913 1.41117 1.52953 1.72778 1.76064 2.15826 2.50973 2.72177 3.46035 3.57912 3.86750 3.98500 4.06220 4.11080 4.27366 4.30678 4.49307 4.57083 4.68637 4.90975 5.00276 5.27086 5.53348 5.61606 5.66620 5.80250 5.85205 5.91091 6.05104 6.19673 6.29929 6.44276 6.51958 6.75965 6.89191 7.21060 7.42101 8.09556 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018324 B = 0.005022 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.642643 B = 5574.174634 C = 6364.775609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.016 3.984 3 Si 1.092 2.908 4 H -0.253 1.253 5 H -0.282 1.282 6 H -0.290 1.290 7 C -0.533 4.533 8 H 0.067 0.933 9 C 0.087 3.913 10 C -0.268 4.268 11 C -0.087 4.087 12 C -0.233 4.233 13 C -0.074 4.074 14 C -0.183 4.183 15 C -0.050 4.050 16 C 0.523 3.477 17 O -0.563 6.563 18 N -0.586 5.586 19 O -0.172 6.172 20 C 0.004 3.996 21 C 0.519 3.481 22 N -0.819 5.819 23 O -0.589 6.589 24 H 0.279 0.721 25 H 0.097 0.903 26 H 0.123 0.877 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.137 0.863 30 H 0.104 0.896 31 H 0.428 0.572 32 H 0.136 0.864 33 H 0.125 0.875 34 H 0.425 0.575 35 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.587 -16.278 -10.315 19.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.198 4.198 3 Si 0.917 3.083 4 H -0.179 1.179 5 H -0.208 1.208 6 H -0.217 1.217 7 C -0.563 4.563 8 H 0.085 0.915 9 C 0.084 3.916 10 C -0.287 4.287 11 C -0.105 4.105 12 C -0.252 4.252 13 C -0.092 4.092 14 C -0.184 4.184 15 C -0.090 4.090 16 C 0.312 3.688 17 O -0.439 6.439 18 N -0.293 5.293 19 O -0.176 6.176 20 C -0.076 4.076 21 C 0.302 3.698 22 N -0.387 5.387 23 O -0.468 6.468 24 H 0.090 0.910 25 H 0.115 0.885 26 H 0.141 0.859 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.155 0.845 30 H 0.122 0.878 31 H 0.272 0.728 32 H 0.153 0.847 33 H 0.142 0.858 34 H 0.257 0.743 35 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 3.908 -12.980 -10.326 17.041 hybrid contribution -0.787 -2.173 -0.669 2.406 sum 3.121 -15.154 -10.995 18.981 Atomic orbital electron populations 1.70606 1.08277 1.32422 1.36542 1.27717 0.95857 1.06141 0.90061 0.83322 0.74444 0.72060 0.78434 1.17890 1.20816 1.21728 1.20531 0.95805 0.96019 1.43979 0.91461 1.17811 0.93037 0.91404 0.89323 1.21328 0.97093 1.04995 1.05280 1.21024 0.93062 0.97899 0.98492 1.20909 0.99713 0.99767 1.04837 1.20949 0.93865 0.98193 0.96237 1.19460 0.94074 1.02193 1.02713 1.20279 1.04743 0.98403 0.85581 1.21762 0.75795 0.85543 0.85693 1.90717 1.47396 1.21024 1.84725 1.47605 1.68935 1.17855 0.94926 1.90764 1.87145 1.33921 1.05723 1.23009 1.04224 0.94869 0.85498 1.20353 0.76645 0.85592 0.87185 1.43389 1.66387 1.20216 1.08683 1.90844 1.47671 1.21071 1.87234 0.91023 0.88497 0.85868 0.85292 0.85116 0.84474 0.87798 0.72800 0.84677 0.85767 0.74251 0.75262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.20 13.65 21.82 0.30 -48.90 16 2 C 0.02 0.90 5.42 85.26 0.46 1.36 16 3 Si 1.09 56.03 24.89 68.60 1.71 57.73 16 4 H -0.25 -11.71 6.44 99.48 0.64 -11.07 16 5 H -0.28 -15.50 7.02 99.48 0.70 -14.80 16 6 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 7 C -0.53 -29.64 8.80 23.46 0.21 -29.43 16 8 H 0.07 3.69 6.60 -2.91 -0.02 3.67 16 9 C 0.09 4.52 5.13 -21.29 -0.11 4.41 16 10 C -0.27 -13.46 7.26 22.73 0.16 -13.30 16 11 C -0.09 -3.76 10.02 22.22 0.22 -3.53 16 12 C -0.23 -9.27 10.05 22.46 0.23 -9.04 16 13 C -0.07 -2.97 9.66 22.22 0.21 -2.75 16 14 C -0.18 -8.15 4.43 -19.40 -0.09 -8.24 16 15 C -0.05 -1.76 5.36 29.10 0.16 -1.60 16 16 C 0.52 21.24 7.97 87.66 0.70 21.94 16 17 O -0.56 -30.74 16.44 14.37 0.24 -30.50 16 18 N -0.59 -17.60 6.39 -173.52 -1.11 -18.71 16 19 O -0.17 -5.90 10.64 -11.14 -0.12 -6.02 16 20 C 0.00 0.07 6.71 71.24 0.48 0.54 16 21 C 0.52 11.71 8.18 87.66 0.72 12.43 16 22 N -0.82 -8.00 8.87 -173.53 -1.54 -9.54 16 23 O -0.59 -22.09 17.34 16.01 0.28 -21.81 16 24 H 0.28 15.53 8.73 -92.71 -0.81 14.73 16 25 H 0.10 4.91 4.43 -2.91 -0.01 4.89 16 26 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 27 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 28 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 29 H 0.14 3.24 8.05 -2.39 -0.02 3.22 16 30 H 0.10 3.53 6.51 -2.39 -0.02 3.51 16 31 H 0.43 7.48 8.54 -92.71 -0.79 6.69 16 32 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.42 0.30 8.83 -92.70 -0.82 -0.51 16 35 H 0.41 3.62 8.93 -92.71 -0.83 2.79 16 Total: -1.00 -92.01 308.87 1.73 -90.28 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -1.38 Total: 14.69 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: 3.35 Total: -27.22 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -2.35 Total: -77.15 kcal Atomic # 8 Polarization: -58.73 SS G_CDS: 0.40 Total: -58.34 kcal Atomic # 14 Polarization: 56.03 SS G_CDS: 1.71 Total: 57.73 kcal Total: -92.01 1.73 -90.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777531377.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.960 kcal (2) G-P(sol) polarization free energy of solvation -92.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds