Wall clock time and date at job start Tue Mar 31 2020 00:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99936 * 2 1 4 4 H 1.48502 * 109.47027 * 240.00206 * 3 2 1 5 5 H 1.48501 * 109.46843 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46999 * 119.99877 * 3 2 1 7 7 C 1.37872 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00640 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00027 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46895 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46658 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.46857 * 180.02562 * 11 10 9 13 13 C 1.34674 * 116.99701 * 180.02562 * 12 11 10 14 14 O 1.21423 * 119.99972 * 359.97438 * 13 12 11 15 15 C 1.48128 * 119.99507 * 180.26997 * 13 12 11 16 16 C 1.39673 * 119.65164 * 179.44605 * 15 13 12 17 17 C 1.38543 * 119.23628 * 179.79236 * 16 15 13 18 18 C 1.38577 * 118.56097 * 0.47908 * 17 16 15 19 19 C 1.39613 * 119.25325 * 359.74456 * 18 17 16 20 20 C 1.48222 * 119.65474 * 179.97438 * 19 18 17 21 21 N 1.34775 * 119.99967 * 180.02562 * 20 19 18 22 22 O 1.21506 * 120.00096 * 0.02846 * 20 19 18 23 23 N 1.32356 * 120.69179 * 0.02573 * 19 18 17 24 24 H 0.96994 * 120.00186 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47138 * 59.99876 * 9 7 2 26 26 H 1.09004 * 109.46725 * 299.99800 * 9 7 2 27 27 H 1.08998 * 109.47561 * 59.99850 * 10 9 7 28 28 H 1.08996 * 109.47184 * 299.99603 * 10 9 7 29 29 H 1.08998 * 109.47272 * 59.99655 * 11 10 9 30 30 H 1.09004 * 109.46829 * 299.99434 * 11 10 9 31 31 H 1.07994 * 120.37873 * 0.02562 * 16 15 13 32 32 H 1.08001 * 120.72090 * 180.19759 * 17 16 15 33 33 H 1.07996 * 120.38066 * 179.76931 * 18 17 16 34 34 H 0.97006 * 120.00358 * 0.02562 * 21 20 19 35 35 H 0.97004 * 120.00168 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 8 2.4240 -6.0907 -0.0006 13 6 1.9092 -7.3352 -0.0016 14 8 0.7054 -7.4943 -0.0024 15 6 2.8116 -8.5098 0.0050 16 6 2.2700 -9.7972 0.0157 17 6 3.1220 -10.8897 0.0174 18 6 4.4892 -10.6637 0.0186 19 6 4.9636 -9.3507 0.0126 20 6 6.4243 -9.0987 0.0144 21 7 6.8899 -7.8340 0.0092 22 8 7.2019 -10.0324 0.0206 23 7 4.1228 -8.3286 0.0064 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6248 -2.5571 0.8898 27 1 2.8721 -3.6043 0.8894 28 1 2.8720 -3.6042 -0.8905 29 1 0.8539 -5.0446 -0.8913 30 1 0.8534 -5.0451 0.8887 31 1 1.1995 -9.9393 0.0187 32 1 2.7291 -11.8957 0.0224 33 1 5.1800 -11.4938 0.0237 34 1 6.2692 -7.0886 0.0046 35 1 7.8458 -7.6690 0.0100 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781723377.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:36 Heat of formation + Delta-G solvation = -100.406797 kcal Electronic energy + Delta-G solvation = -20097.990635 eV Core-core repulsion = 16674.759323 eV Total energy + Delta-G solvation = -3423.231313 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.25842 -40.06757 -38.92881 -36.58633 -34.24427 -34.02300 -32.98197 -32.07791 -31.61376 -27.34378 -25.47751 -25.25153 -23.25654 -21.84426 -20.84375 -20.35891 -18.59913 -18.11195 -17.23456 -16.78452 -16.49325 -16.46091 -16.01704 -15.68861 -15.42865 -14.63984 -14.49098 -14.34036 -13.84989 -13.58586 -13.38167 -12.60669 -12.20647 -12.19574 -11.93738 -11.21046 -10.97572 -10.73966 -10.67181 -10.55504 -10.54606 -10.44452 -10.10527 -10.01179 -9.79093 -9.71257 -9.53666 -9.19930 -8.40204 -6.05176 -4.08381 -0.03597 0.41261 1.99184 2.50502 2.59959 2.97818 3.31350 3.35825 3.38149 3.45547 3.65303 4.33004 4.37875 4.41579 4.45801 4.51179 4.94567 4.98941 5.30819 5.39627 5.50486 5.52516 5.55459 5.88487 5.96810 6.34177 6.41382 6.50980 6.72486 6.88288 6.94889 7.15784 7.57775 7.68806 7.73853 7.87732 7.92896 8.33769 8.97646 9.56018 11.06244 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023044 B = 0.003149 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.759024 B = 8889.600875 C =10078.593281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.065 3.935 12 O -0.332 6.332 13 C 0.518 3.482 14 O -0.498 6.498 15 C 0.099 3.901 16 C -0.085 4.085 17 C -0.087 4.087 18 C -0.085 4.085 19 C 0.070 3.930 20 C 0.582 3.418 21 N -0.830 5.830 22 O -0.539 6.539 23 N -0.406 5.406 24 H 0.262 0.738 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.159 0.841 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.417 0.583 35 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.210 -21.718 0.030 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.007 4.007 12 O -0.247 6.247 13 C 0.360 3.640 14 O -0.385 6.385 15 C -0.040 4.040 16 C -0.105 4.105 17 C -0.112 4.112 18 C -0.106 4.106 19 C -0.071 4.071 20 C 0.364 3.636 21 N -0.394 5.394 22 O -0.415 6.415 23 N -0.121 5.121 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.176 0.824 32 H 0.173 0.827 33 H 0.175 0.825 34 H 0.248 0.752 35 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 8.362 -21.407 0.031 22.982 hybrid contribution -0.058 0.650 0.000 0.653 sum 8.303 -20.757 0.032 22.356 Atomic orbital electron populations 1.69949 1.06092 1.26906 1.50430 1.25024 0.94877 0.99357 0.95166 0.86606 0.79538 0.82880 0.78678 1.20168 1.21269 1.20165 1.21132 0.93103 0.90669 1.51172 0.92447 1.19052 0.93828 0.90704 0.97696 1.21767 0.99952 0.90717 1.02127 1.23644 0.91258 0.83464 1.02376 1.86646 1.41880 1.14126 1.82059 1.20611 0.86129 0.83797 0.73483 1.90861 1.15218 1.86862 1.45604 1.20196 0.89417 0.91642 1.02735 1.22390 1.02964 0.91238 0.93876 1.21680 0.92494 1.00066 0.96990 1.22425 0.96656 0.97793 0.93678 1.21172 0.93942 0.89888 1.02114 1.17735 0.86290 0.83619 0.75917 1.43687 1.12341 1.08017 1.75314 1.90835 1.56877 1.43226 1.50593 1.67488 1.03230 1.34762 1.06605 0.92815 0.96208 0.96223 0.92011 0.92019 0.91223 0.91236 0.82366 0.82672 0.82541 0.75153 0.76146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.18 5.53 -26.73 -0.15 -2.32 16 11 C 0.07 1.16 5.47 37.16 0.20 1.37 16 12 O -0.33 -5.46 10.03 -40.42 -0.41 -5.87 16 13 C 0.52 7.76 7.95 34.79 0.28 8.04 16 14 O -0.50 -8.24 16.11 -19.21 -0.31 -8.55 16 15 C 0.10 1.20 6.75 -83.04 -0.56 0.64 16 16 C -0.08 -0.74 9.64 -38.93 -0.38 -1.12 16 17 C -0.09 -0.56 10.16 -39.34 -0.40 -0.96 16 18 C -0.08 -0.68 9.63 -38.94 -0.38 -1.05 16 19 C 0.07 0.73 6.75 -83.03 -0.56 0.17 16 20 C 0.58 6.28 8.09 -12.16 -0.10 6.18 16 21 N -0.83 -6.98 8.86 30.62 0.27 -6.71 16 22 O -0.54 -7.06 17.16 5.36 0.09 -6.97 16 23 N -0.41 -4.82 9.29 -6.39 -0.06 -4.88 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.16 1.19 7.64 -52.49 -0.40 0.79 16 32 H 0.16 0.45 8.06 -52.49 -0.42 0.02 16 33 H 0.16 1.02 7.64 -52.49 -0.40 0.62 16 34 H 0.42 3.43 8.16 -40.82 -0.33 3.10 16 35 H 0.41 2.62 8.93 -40.82 -0.36 2.26 16 LS Contribution 320.42 15.07 4.83 4.83 Total: -1.00 -33.23 320.42 -6.45 -39.68 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -4.00 Total: -0.15 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -2.59 Total: -1.88 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.95 Total: -37.41 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.62 Total: -21.38 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.23 -6.45 -39.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781723377.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.722 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds