Wall clock time and date at job start Tue Mar 31 2020 00:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99936 * 2 1 4 4 H 1.48502 * 109.47027 * 240.00206 * 3 2 1 5 5 H 1.48501 * 109.46843 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46999 * 119.99877 * 3 2 1 7 7 C 1.37872 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00640 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00027 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46895 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46658 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.46857 * 180.02562 * 11 10 9 13 13 C 1.34674 * 116.99701 * 180.02562 * 12 11 10 14 14 O 1.21423 * 119.99972 * 359.97438 * 13 12 11 15 15 C 1.48128 * 119.99507 * 180.26997 * 13 12 11 16 16 C 1.39673 * 119.65164 * 179.44605 * 15 13 12 17 17 C 1.38543 * 119.23628 * 179.79236 * 16 15 13 18 18 C 1.38577 * 118.56097 * 0.47908 * 17 16 15 19 19 C 1.39613 * 119.25325 * 359.74456 * 18 17 16 20 20 C 1.48222 * 119.65474 * 179.97438 * 19 18 17 21 21 N 1.34775 * 119.99967 * 180.02562 * 20 19 18 22 22 O 1.21506 * 120.00096 * 0.02846 * 20 19 18 23 23 N 1.32356 * 120.69179 * 0.02573 * 19 18 17 24 24 H 0.96994 * 120.00186 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47138 * 59.99876 * 9 7 2 26 26 H 1.09004 * 109.46725 * 299.99800 * 9 7 2 27 27 H 1.08998 * 109.47561 * 59.99850 * 10 9 7 28 28 H 1.08996 * 109.47184 * 299.99603 * 10 9 7 29 29 H 1.08998 * 109.47272 * 59.99655 * 11 10 9 30 30 H 1.09004 * 109.46829 * 299.99434 * 11 10 9 31 31 H 1.07994 * 120.37873 * 0.02562 * 16 15 13 32 32 H 1.08001 * 120.72090 * 180.19759 * 17 16 15 33 33 H 1.07996 * 120.38066 * 179.76931 * 18 17 16 34 34 H 0.97006 * 120.00358 * 0.02562 * 21 20 19 35 35 H 0.97004 * 120.00168 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 8 2.4240 -6.0907 -0.0006 13 6 1.9092 -7.3352 -0.0016 14 8 0.7054 -7.4943 -0.0024 15 6 2.8116 -8.5098 0.0050 16 6 2.2700 -9.7972 0.0157 17 6 3.1220 -10.8897 0.0174 18 6 4.4892 -10.6637 0.0186 19 6 4.9636 -9.3507 0.0126 20 6 6.4243 -9.0987 0.0144 21 7 6.8899 -7.8340 0.0092 22 8 7.2019 -10.0324 0.0206 23 7 4.1228 -8.3286 0.0064 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6248 -2.5571 0.8898 27 1 2.8721 -3.6043 0.8894 28 1 2.8720 -3.6042 -0.8905 29 1 0.8539 -5.0446 -0.8913 30 1 0.8534 -5.0451 0.8887 31 1 1.1995 -9.9393 0.0187 32 1 2.7291 -11.8957 0.0224 33 1 5.1800 -11.4938 0.0237 34 1 6.2692 -7.0886 0.0046 35 1 7.8458 -7.6690 0.0100 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781723377.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:36 Heat of formation + Delta-G solvation = -124.057884 kcal Electronic energy + Delta-G solvation = -20099.016223 eV Core-core repulsion = 16674.759323 eV Total energy + Delta-G solvation = -3424.256901 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.13664 -41.15263 -39.79267 -37.90227 -35.94145 -34.98609 -33.88561 -33.49663 -32.75609 -29.11839 -26.58767 -26.05043 -24.89854 -22.77897 -22.16684 -21.74871 -19.52727 -19.08477 -18.54293 -18.01890 -17.77773 -17.58712 -17.09125 -16.53221 -16.43163 -16.31975 -15.70268 -15.44502 -14.84306 -14.61560 -14.38909 -14.10389 -13.78831 -13.78112 -13.24772 -12.80161 -12.54422 -12.45570 -12.23664 -12.08368 -11.71204 -11.46351 -11.41658 -11.26119 -11.19232 -10.85867 -10.79622 -10.55673 -10.50525 -8.20853 -6.32206 -0.80022 -0.31498 1.10008 1.36998 1.43080 1.45330 1.53426 1.67674 2.23176 2.41983 2.66402 2.81205 3.13154 3.50828 3.65135 3.80759 3.84411 4.00916 4.04244 4.19501 4.32378 4.42003 4.76165 4.81024 4.87621 4.92552 5.07791 5.27088 5.30391 5.50170 5.65510 5.72221 5.81344 6.08522 6.20255 6.34212 6.60373 6.83605 7.14061 7.37272 8.91125 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023044 B = 0.003149 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.759024 B = 8889.600875 C =10078.593281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.093 4.093 11 C 0.075 3.925 12 O -0.337 6.337 13 C 0.517 3.483 14 O -0.519 6.519 15 C 0.073 3.927 16 C -0.076 4.076 17 C -0.064 4.064 18 C -0.075 4.075 19 C 0.053 3.947 20 C 0.579 3.421 21 N -0.820 5.820 22 O -0.567 6.567 23 N -0.424 5.424 24 H 0.264 0.736 25 H -0.002 1.002 26 H -0.002 1.002 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.172 0.828 32 H 0.202 0.798 33 H 0.175 0.825 34 H 0.419 0.581 35 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.335 -23.170 0.038 24.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.011 4.011 10 C -0.130 4.130 11 C 0.002 3.998 12 O -0.252 6.252 13 C 0.361 3.639 14 O -0.408 6.408 15 C -0.066 4.066 16 C -0.096 4.096 17 C -0.090 4.090 18 C -0.096 4.096 19 C -0.088 4.088 20 C 0.362 3.638 21 N -0.382 5.382 22 O -0.446 6.446 23 N -0.139 5.139 24 H 0.073 0.927 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.189 0.811 32 H 0.219 0.781 33 H 0.192 0.808 34 H 0.251 0.749 35 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 9.506 -22.851 0.039 24.750 hybrid contribution -0.400 0.996 -0.002 1.073 sum 9.106 -21.855 0.037 23.676 Atomic orbital electron populations 1.70086 1.07850 1.27978 1.51442 1.25989 0.95772 1.03448 0.94618 0.85467 0.78225 0.77878 0.79292 1.19055 1.21000 1.19044 1.21608 0.93776 0.91904 1.50905 0.91657 1.18930 0.94248 0.92360 0.95537 1.21447 0.98739 0.90249 1.02605 1.23270 0.90925 0.83366 1.02253 1.86624 1.41387 1.14653 1.82540 1.21179 0.86537 0.83753 0.72420 1.90841 1.16196 1.86987 1.46765 1.19989 0.89297 0.91399 1.05899 1.22628 1.04044 0.90369 0.92564 1.22156 0.91258 1.01294 0.94250 1.22747 0.97832 0.97153 0.91833 1.21264 0.93463 0.90782 1.03321 1.17880 0.86494 0.83796 0.75602 1.43650 1.13025 1.07501 1.74072 1.90816 1.57489 1.43978 1.52295 1.67300 1.03377 1.35868 1.07318 0.92688 0.98384 0.98400 0.91461 0.91468 0.91411 0.91426 0.81072 0.78072 0.80759 0.74936 0.75117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.97 43.62 29.54 68.60 2.03 45.65 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.54 -30.47 9.11 25.60 0.23 -30.24 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.03 1.37 4.97 29.85 0.15 1.52 16 10 C -0.09 -3.78 5.53 30.60 0.17 -3.61 16 11 C 0.08 2.72 5.47 71.98 0.39 3.11 16 12 O -0.34 -11.11 10.03 -55.83 -0.56 -11.67 16 13 C 0.52 15.44 7.95 70.45 0.56 16.00 16 14 O -0.52 -17.15 16.11 20.08 0.32 -16.83 16 15 C 0.07 1.68 6.75 42.04 0.28 1.96 16 16 C -0.08 -1.14 9.64 22.69 0.22 -0.92 16 17 C -0.06 -0.58 10.16 22.42 0.23 -0.35 16 18 C -0.08 -0.98 9.63 22.68 0.22 -0.76 16 19 C 0.05 1.04 6.75 42.05 0.28 1.32 16 20 C 0.58 11.98 8.09 86.90 0.70 12.68 16 21 N -0.82 -13.24 8.86 -175.35 -1.55 -14.80 16 22 O -0.57 -14.31 17.16 -3.73 -0.06 -14.38 16 23 N -0.42 -9.70 9.29 -174.12 -1.62 -11.31 16 24 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 25 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 26 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 27 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 31 H 0.17 2.12 7.64 -2.91 -0.02 2.10 16 32 H 0.20 -0.02 8.06 -2.91 -0.02 -0.05 16 33 H 0.17 1.69 7.64 -2.91 -0.02 1.67 16 34 H 0.42 6.70 8.16 -92.70 -0.76 5.94 16 35 H 0.42 5.07 8.93 -92.71 -0.83 4.24 16 Total: -1.00 -72.60 320.42 2.30 -70.30 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -0.44 Total: 7.99 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 3.90 Total: 1.17 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -2.89 Total: -82.23 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -0.30 Total: -42.88 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -72.60 2.30 -70.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781723377.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.755 kcal (2) G-P(sol) polarization free energy of solvation -72.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds