Wall clock time and date at job start Tue Mar 31 2020 00:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00009 * 2 1 4 4 H 1.48503 * 109.47291 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47058 * 299.99752 * 3 2 1 6 6 H 1.48504 * 109.47271 * 59.99581 * 3 2 1 7 7 C 1.37881 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99811 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99822 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47109 * 179.97438 * 9 7 2 11 11 C 1.34782 * 120.00245 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99787 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00102 * 180.02562 * 11 10 9 14 14 O 1.42894 * 109.47071 * 180.02562 * 13 11 10 15 15 C 1.35000 * 116.99943 * 179.97438 * 14 13 11 16 16 O 1.21711 * 120.00149 * 359.97438 * 15 14 13 17 17 C 1.41261 * 119.99933 * 180.02562 * 15 14 13 18 18 C 1.35749 * 119.99663 * 188.38965 * 17 15 14 19 19 C 1.41589 * 120.00408 * 32.31606 * 18 17 15 20 20 C 1.38325 * 126.26393 * 187.22325 * 19 18 17 21 21 C 1.39765 * 107.07286 * 180.02562 * 20 19 18 22 22 C 1.35528 * 107.91463 * 359.76275 * 21 20 19 23 23 N 1.35727 * 108.91900 * 0.39196 * 22 21 20 24 24 H 0.97008 * 125.68746 * 179.86508 * 23 22 21 25 25 H 0.97008 * 120.00271 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46896 * 60.00279 * 9 7 2 27 27 H 1.08993 * 109.47435 * 300.00543 * 9 7 2 28 28 H 0.97008 * 119.99813 * 0.02562 * 10 9 7 29 29 H 1.09005 * 109.47284 * 59.99949 * 13 11 10 30 30 H 1.09001 * 109.47209 * 299.99819 * 13 11 10 31 31 H 1.07998 * 119.99961 * 8.38799 * 17 15 14 32 32 H 1.08002 * 119.99581 * 212.31403 * 18 17 15 33 33 H 1.08000 * 126.46863 * 0.02800 * 20 19 18 34 34 H 1.07997 * 126.04038 * 180.02562 * 21 20 19 35 35 H 1.07997 * 125.54314 * 180.23857 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2029 -3.6126 0.0015 11 6 1.7537 -4.8834 0.0019 12 8 0.5614 -5.1049 0.0019 13 6 2.7330 -6.0288 0.0022 14 8 2.0185 -7.2663 0.0020 15 6 2.7538 -8.3985 0.0017 16 8 3.9692 -8.3348 0.0012 17 6 2.1124 -9.6571 0.0009 18 6 2.8406 -10.7899 0.1722 19 6 3.9990 -10.7708 0.9861 20 6 4.9090 -11.8013 1.1386 21 6 5.8895 -11.3546 2.0287 22 6 5.5753 -10.0878 2.3937 23 7 4.4256 -9.7229 1.7713 24 1 3.9809 -8.8654 1.8613 25 1 -0.4851 0.8401 -0.0004 26 1 0.6240 -2.5574 -0.8881 27 1 0.6246 -2.5563 0.8918 28 1 3.1567 -3.4353 0.0010 29 1 3.3597 -5.9708 0.8922 30 1 3.3596 -5.9714 -0.8878 31 1 1.0429 -9.7181 -0.1359 32 1 2.5362 -11.7059 -0.3124 33 1 4.8694 -12.7687 0.6601 34 1 6.7483 -11.9177 2.3630 35 1 6.1454 -9.4700 3.0716 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782338464.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:16 Heat of formation + Delta-G solvation = -39.144229 kcal Electronic energy + Delta-G solvation = -20261.335344 eV Core-core repulsion = 16840.760575 eV Total energy + Delta-G solvation = -3420.574768 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.68736 -40.42595 -38.76047 -36.64728 -34.27679 -34.15296 -32.43574 -31.22707 -29.70465 -28.48511 -26.73311 -24.43485 -22.56989 -21.35745 -20.65703 -20.08685 -19.93663 -18.49674 -17.68469 -17.11554 -16.61997 -15.85665 -15.45206 -15.05135 -14.68040 -14.56050 -14.44335 -14.27654 -13.74846 -13.56254 -13.02147 -12.90727 -12.60276 -12.46179 -12.24356 -12.02121 -11.79777 -11.01387 -10.96294 -10.75347 -10.67066 -10.37031 -10.18248 -9.44936 -9.20216 -9.14799 -8.81253 -8.01658 -7.88499 -6.22110 -4.29572 0.05192 2.21049 2.57365 2.61132 3.02625 3.12765 3.16372 3.20483 3.27791 3.30794 4.04715 4.31795 4.70119 4.74291 4.91599 5.01362 5.06128 5.13982 5.16852 5.20158 5.25957 5.31244 5.60402 5.72492 5.96603 6.00021 6.31727 6.62044 6.79527 7.19924 7.26824 7.28299 7.43053 7.56860 7.68323 7.89344 8.47235 8.68714 8.93776 9.36951 10.88082 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.037832 B = 0.002801 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.927546 B = 9994.803476 C =10561.922052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.250 3.750 10 N -0.706 5.706 11 C 0.499 3.501 12 O -0.534 6.534 13 C 0.048 3.952 14 O -0.322 6.322 15 C 0.493 3.507 16 O -0.527 6.527 17 C -0.273 4.273 18 C 0.067 3.933 19 C -0.011 4.011 20 C -0.131 4.131 21 C -0.219 4.219 22 C 0.033 3.967 23 N -0.515 5.515 24 H 0.417 0.583 25 H 0.266 0.734 26 H 0.030 0.970 27 H 0.029 0.971 28 H 0.393 0.607 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.259 -22.317 2.995 24.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.130 3.870 10 N -0.357 5.357 11 C 0.282 3.718 12 O -0.411 6.411 13 C -0.030 4.030 14 O -0.237 6.237 15 C 0.344 3.656 16 O -0.422 6.422 17 C -0.293 4.293 18 C 0.048 3.952 19 C -0.121 4.121 20 C -0.157 4.157 21 C -0.243 4.243 22 C -0.106 4.106 23 N -0.110 5.110 24 H 0.260 0.740 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.225 0.775 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.170 0.830 32 H 0.174 0.826 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 9.424 -22.083 2.996 24.196 hybrid contribution 0.859 1.588 -0.050 1.806 sum 10.283 -20.495 2.946 23.118 Atomic orbital electron populations 1.69981 1.06129 1.27328 1.48729 1.24959 0.94938 0.99525 0.94603 0.86334 0.79806 0.82810 0.77802 1.19606 1.20735 1.20752 1.21238 0.93349 0.90282 1.53444 0.91732 1.19181 0.88182 0.81570 0.98034 1.46370 1.11487 1.05378 1.72433 1.19906 0.89114 0.83999 0.78786 1.90708 1.16327 1.84540 1.49526 1.22447 0.94599 0.81821 1.04166 1.86329 1.39994 1.13850 1.83516 1.20126 0.85966 0.85701 0.73776 1.90916 1.14742 1.88367 1.48189 1.21166 1.01880 0.89240 1.17025 1.20964 0.88685 0.98487 0.87088 1.18302 1.00868 0.89935 1.03040 1.21556 0.94663 0.98574 1.00890 1.20867 1.02621 0.95939 1.04858 1.22208 0.89422 0.97604 1.01333 1.42662 1.20109 1.14477 1.33800 0.74034 0.92401 0.95250 0.95260 0.77456 0.89173 0.88813 0.83008 0.82613 0.83838 0.84229 0.81536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.84 13.29 55.43 0.74 -25.10 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.22 16 9 C 0.25 6.56 5.43 -5.20 -0.03 6.54 16 10 N -0.71 -14.65 5.55 -61.48 -0.34 -14.99 16 11 C 0.50 10.07 7.91 -10.98 -0.09 9.99 16 12 O -0.53 -13.17 16.50 -14.35 -0.24 -13.40 16 13 C 0.05 0.73 5.86 36.01 0.21 0.94 16 14 O -0.32 -5.14 9.64 -48.08 -0.46 -5.60 16 15 C 0.49 6.68 6.44 31.88 0.21 6.88 16 16 O -0.53 -7.64 12.51 -19.43 -0.24 -7.88 16 17 C -0.27 -2.87 9.86 -39.32 -0.39 -3.26 16 18 C 0.07 0.57 9.76 -39.20 -0.38 0.19 16 19 C -0.01 -0.11 5.94 -83.91 -0.50 -0.61 16 20 C -0.13 -1.17 10.86 -38.98 -0.42 -1.59 16 21 C -0.22 -1.92 10.81 -39.98 -0.43 -2.35 16 22 C 0.03 0.30 11.90 -16.80 -0.20 0.10 16 23 N -0.51 -5.50 4.51 -10.57 -0.05 -5.55 16 24 H 0.42 4.61 6.15 -40.82 -0.25 4.36 16 25 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 26 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.39 6.84 8.32 -40.82 -0.34 6.50 16 29 H 0.09 1.16 8.13 -51.93 -0.42 0.73 16 30 H 0.09 1.28 8.13 -51.93 -0.42 0.86 16 31 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 315.56 15.07 4.76 4.76 Total: -1.00 -34.58 315.56 -7.23 -41.81 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -3.93 Total: 6.76 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -2.44 Total: 3.57 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.35 Total: -45.64 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.94 Total: -26.88 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.58 -7.23 -41.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782338464.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.669 kcal (2) G-P(sol) polarization free energy of solvation -34.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds