Wall clock time and date at job start Tue Mar 31 2020 00:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00009 * 2 1 4 4 H 1.48503 * 109.47291 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47058 * 299.99752 * 3 2 1 6 6 H 1.48504 * 109.47271 * 59.99581 * 3 2 1 7 7 C 1.37881 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99811 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99822 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47109 * 179.97438 * 9 7 2 11 11 C 1.34782 * 120.00245 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99787 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00102 * 180.02562 * 11 10 9 14 14 O 1.42894 * 109.47071 * 180.02562 * 13 11 10 15 15 C 1.35000 * 116.99943 * 179.97438 * 14 13 11 16 16 O 1.21711 * 120.00149 * 359.97438 * 15 14 13 17 17 C 1.41261 * 119.99933 * 180.02562 * 15 14 13 18 18 C 1.35749 * 119.99663 * 188.38965 * 17 15 14 19 19 C 1.41589 * 120.00408 * 32.31606 * 18 17 15 20 20 C 1.38325 * 126.26393 * 187.22325 * 19 18 17 21 21 C 1.39765 * 107.07286 * 180.02562 * 20 19 18 22 22 C 1.35528 * 107.91463 * 359.76275 * 21 20 19 23 23 N 1.35727 * 108.91900 * 0.39196 * 22 21 20 24 24 H 0.97008 * 125.68746 * 179.86508 * 23 22 21 25 25 H 0.97008 * 120.00271 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46896 * 60.00279 * 9 7 2 27 27 H 1.08993 * 109.47435 * 300.00543 * 9 7 2 28 28 H 0.97008 * 119.99813 * 0.02562 * 10 9 7 29 29 H 1.09005 * 109.47284 * 59.99949 * 13 11 10 30 30 H 1.09001 * 109.47209 * 299.99819 * 13 11 10 31 31 H 1.07998 * 119.99961 * 8.38799 * 17 15 14 32 32 H 1.08002 * 119.99581 * 212.31403 * 18 17 15 33 33 H 1.08000 * 126.46863 * 0.02800 * 20 19 18 34 34 H 1.07997 * 126.04038 * 180.02562 * 21 20 19 35 35 H 1.07997 * 125.54314 * 180.23857 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2029 -3.6126 0.0015 11 6 1.7537 -4.8834 0.0019 12 8 0.5614 -5.1049 0.0019 13 6 2.7330 -6.0288 0.0022 14 8 2.0185 -7.2663 0.0020 15 6 2.7538 -8.3985 0.0017 16 8 3.9692 -8.3348 0.0012 17 6 2.1124 -9.6571 0.0009 18 6 2.8406 -10.7899 0.1722 19 6 3.9990 -10.7708 0.9861 20 6 4.9090 -11.8013 1.1386 21 6 5.8895 -11.3546 2.0287 22 6 5.5753 -10.0878 2.3937 23 7 4.4256 -9.7229 1.7713 24 1 3.9809 -8.8654 1.8613 25 1 -0.4851 0.8401 -0.0004 26 1 0.6240 -2.5574 -0.8881 27 1 0.6246 -2.5563 0.8918 28 1 3.1567 -3.4353 0.0010 29 1 3.3597 -5.9708 0.8922 30 1 3.3596 -5.9714 -0.8878 31 1 1.0429 -9.7181 -0.1359 32 1 2.5362 -11.7059 -0.3124 33 1 4.8694 -12.7687 0.6601 34 1 6.7483 -11.9177 2.3630 35 1 6.1454 -9.4700 3.0716 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782338464.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:15 Heat of formation + Delta-G solvation = -62.583868 kcal Electronic energy + Delta-G solvation = -20262.351763 eV Core-core repulsion = 16840.760575 eV Total energy + Delta-G solvation = -3421.591187 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.48432 -41.44787 -40.35894 -37.77619 -36.21891 -34.90921 -34.44509 -31.91817 -31.05124 -29.57508 -28.38341 -25.46248 -24.41417 -22.20417 -21.69575 -21.32101 -20.85419 -19.50829 -19.10618 -18.39440 -17.82805 -17.49603 -17.05358 -16.52762 -16.15105 -15.82150 -15.26947 -15.14682 -14.77931 -14.70104 -14.36476 -14.15604 -14.02164 -13.64462 -13.57400 -13.17413 -12.94308 -12.93624 -12.77419 -12.24607 -11.84413 -11.75598 -11.49578 -10.96412 -10.86340 -10.85547 -9.96880 -9.84156 -8.60632 -8.32059 -6.48875 -0.69772 1.37617 1.40781 1.43496 1.46173 1.51563 1.57679 1.86330 2.29145 2.34696 2.43537 2.68910 3.03258 3.65513 3.91707 4.00390 4.02928 4.07711 4.29058 4.40174 4.47166 4.60714 4.92937 5.02863 5.05717 5.18330 5.26487 5.32169 5.38107 5.39398 5.60218 5.79315 5.96980 6.13077 6.53459 6.59501 6.64521 6.77102 7.17555 7.32409 8.80390 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.037832 B = 0.002801 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.927546 B = 9994.803476 C =10561.922052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.698 5.698 11 C 0.498 3.502 12 O -0.585 6.585 13 C 0.062 3.938 14 O -0.348 6.348 15 C 0.492 3.508 16 O -0.544 6.544 17 C -0.310 4.310 18 C 0.099 3.901 19 C -0.048 4.048 20 C -0.123 4.123 21 C -0.231 4.231 22 C 0.028 3.972 23 N -0.529 5.529 24 H 0.413 0.587 25 H 0.269 0.731 26 H -0.009 1.009 27 H -0.007 1.007 28 H 0.412 0.588 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.160 0.840 32 H 0.197 0.803 33 H 0.171 0.829 34 H 0.160 0.840 35 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.046 -23.563 3.173 27.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.143 3.857 10 N -0.350 5.350 11 C 0.284 3.716 12 O -0.465 6.465 13 C -0.015 4.015 14 O -0.264 6.264 15 C 0.346 3.654 16 O -0.440 6.440 17 C -0.330 4.330 18 C 0.081 3.919 19 C -0.157 4.157 20 C -0.148 4.148 21 C -0.255 4.255 22 C -0.111 4.111 23 N -0.124 5.124 24 H 0.254 0.746 25 H 0.078 0.922 26 H 0.009 0.991 27 H 0.010 0.990 28 H 0.248 0.752 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.178 0.822 32 H 0.214 0.786 33 H 0.189 0.811 34 H 0.178 0.822 35 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 12.263 -23.370 3.170 26.582 hybrid contribution 0.078 1.781 -0.040 1.784 sum 12.341 -21.589 3.130 25.063 Atomic orbital electron populations 1.70139 1.08277 1.28612 1.49852 1.26072 0.95793 1.03937 0.93808 0.85089 0.79072 0.77226 0.77688 1.17612 1.20474 1.20430 1.21627 0.94402 0.90340 1.53020 0.89602 1.18639 0.88603 0.83869 0.94564 1.46047 1.11687 1.04736 1.72489 1.20757 0.89313 0.84780 0.76745 1.90680 1.18996 1.85331 1.51510 1.22259 0.92706 0.80047 1.06522 1.86322 1.41208 1.14501 1.84356 1.20538 0.85895 0.85542 0.73424 1.90893 1.15117 1.88322 1.49701 1.21199 1.02623 0.88443 1.20727 1.21482 0.86879 0.99208 0.84336 1.18797 1.02224 0.90462 1.04242 1.22026 0.93747 0.99160 0.99885 1.21265 1.03349 0.96038 1.04826 1.22789 0.88944 0.98264 1.01069 1.42832 1.20684 1.14538 1.34372 0.74648 0.92164 0.99062 0.98951 0.75152 0.86229 0.86706 0.82216 0.78583 0.81145 0.82198 0.79367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.84 13.29 21.45 0.28 -55.55 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.99 41.99 29.54 68.60 2.03 44.02 16 4 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.56 -29.94 9.28 25.60 0.24 -29.70 16 8 H 0.09 4.16 7.60 -2.91 -0.02 4.13 16 9 C 0.27 14.51 5.43 85.63 0.46 14.98 16 10 N -0.70 -29.35 5.55 -466.81 -2.59 -31.94 16 11 C 0.50 20.54 7.91 87.66 0.69 21.23 16 12 O -0.58 -30.22 16.50 16.03 0.26 -29.96 16 13 C 0.06 1.86 5.86 71.24 0.42 2.28 16 14 O -0.35 -11.17 9.64 -52.72 -0.51 -11.68 16 15 C 0.49 13.16 6.44 68.56 0.44 13.60 16 16 O -0.54 -15.27 12.51 19.15 0.24 -15.03 16 17 C -0.31 -6.28 9.86 22.44 0.22 -6.06 16 18 C 0.10 1.49 9.76 22.52 0.22 1.71 16 19 C -0.05 -0.88 5.94 39.07 0.23 -0.64 16 20 C -0.12 -1.82 10.86 22.66 0.25 -1.57 16 21 C -0.23 -3.43 10.81 22.01 0.24 -3.19 16 22 C 0.03 0.45 11.90 83.46 0.99 1.45 16 23 N -0.53 -10.59 4.51 -187.35 -0.85 -11.44 16 24 H 0.41 8.88 6.15 -92.70 -0.57 8.31 16 25 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 26 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 27 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 28 H 0.41 13.96 8.32 -92.70 -0.77 13.19 16 29 H 0.12 2.87 8.13 -2.38 -0.02 2.86 16 30 H 0.12 2.97 8.13 -2.39 -0.02 2.95 16 31 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 32 H 0.20 1.14 8.06 -2.91 -0.02 1.11 16 33 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 35 H 0.19 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -77.95 315.56 3.53 -74.42 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -0.21 Total: 22.42 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 4.87 Total: 14.75 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -3.15 Total: -98.93 kcal Atomic # 8 Polarization: -56.67 SS G_CDS: 0.00 Total: -56.67 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -77.95 3.53 -74.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782338464.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.833 kcal (2) G-P(sol) polarization free energy of solvation -77.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds