Wall clock time and date at job start Tue Mar 31 2020 01:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38388 * 120.85689 * 2 1 4 4 C 1.38315 * 119.30835 * 179.97438 * 3 2 1 5 5 N 1.31965 * 121.09401 * 0.02562 * 4 3 2 6 6 C 1.31655 * 121.88575 * 359.97438 * 5 4 3 7 7 C 1.39618 * 120.55706 * 359.74067 * 6 5 4 8 8 C 1.47718 * 120.56544 * 180.28870 * 7 6 5 9 9 O 1.21473 * 120.00134 * 186.12000 * 8 7 6 10 10 O 1.34711 * 120.00032 * 6.11679 * 8 7 6 11 11 C 1.45195 * 116.99904 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47277 * 180.02562 * 11 10 8 13 13 O 1.21281 * 119.99985 * 359.97438 * 12 11 10 14 14 N 1.34772 * 120.00588 * 180.02562 * 12 11 10 15 15 C 1.46494 * 120.00548 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47635 * 180.02562 * 15 14 12 17 17 H 1.08010 * 119.99520 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00441 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99731 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00146 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46766 * 60.00402 * 20 18 16 22 22 H 1.48499 * 109.47091 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47452 * 300.00436 * 20 18 16 24 24 H 1.08996 * 109.47213 * 96.28640 * 1 2 3 25 25 H 1.09007 * 109.47102 * 336.28495 * 1 2 3 26 26 H 1.09001 * 109.47028 * 216.29305 * 1 2 3 27 27 H 1.07997 * 120.34532 * 359.94888 * 3 2 1 28 28 H 1.08003 * 119.45050 * 179.97438 * 4 3 2 29 29 H 1.07995 * 119.72142 * 180.02562 * 6 5 4 30 30 H 1.08998 * 109.47538 * 300.00088 * 11 10 8 31 31 H 1.09002 * 109.47248 * 60.00618 * 11 10 8 32 32 H 0.97010 * 119.99633 * 0.02562 * 14 12 11 33 33 H 1.09008 * 109.46863 * 299.99655 * 15 14 12 34 34 H 1.08992 * 109.47227 * 59.99751 * 15 14 12 35 35 H 0.97005 * 119.99572 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1880 0.0000 4 6 3.5994 1.1506 0.0005 5 7 4.2502 0.0026 0.0005 6 6 3.6206 -1.1537 0.0005 7 6 2.2253 -1.2021 0.0060 8 6 1.5187 -2.4993 0.0124 9 8 0.3092 -2.5327 -0.0951 10 8 2.2156 -3.6454 0.1373 11 6 1.4557 -4.8826 0.1351 12 6 2.3966 -6.0503 0.2840 13 8 3.5902 -5.8587 0.3819 14 7 1.9119 -7.3076 0.3074 15 6 2.8265 -8.4427 0.4527 16 6 2.0380 -9.7270 0.4490 17 1 0.9629 -9.7002 0.3489 18 6 2.6889 -10.9360 0.5734 19 7 3.9980 -10.9686 0.6948 20 14 1.7114 -12.5278 0.5695 21 1 0.9695 -12.6499 -0.7111 22 1 2.6386 -13.6785 0.7155 23 1 0.7489 -12.5205 1.7004 24 1 -0.3633 -0.1125 -1.0214 25 1 -0.3634 0.9409 0.4133 26 1 -0.3633 -0.8283 0.6083 27 1 1.6966 2.1344 -0.0008 28 1 4.1557 2.0764 0.0001 29 1 4.1882 -2.0724 0.0010 30 1 0.7499 -4.8770 0.9657 31 1 0.9105 -4.9724 -0.8045 32 1 0.9573 -7.4610 0.2280 33 1 3.5333 -8.4484 -0.3772 34 1 3.3707 -8.3528 1.3927 35 1 4.4559 -11.8192 0.7828 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785891811.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:28 Heat of formation + Delta-G solvation = -111.733920 kcal Electronic energy + Delta-G solvation = -20240.517817 eV Core-core repulsion = 16816.795323 eV Total energy + Delta-G solvation = -3423.722494 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.10784 -40.94966 -40.19665 -37.71499 -36.19315 -34.86534 -34.42423 -32.86511 -30.79517 -29.15015 -28.36952 -25.78622 -24.61441 -23.44939 -22.26452 -21.66022 -19.47123 -19.10594 -18.08593 -17.90562 -17.38421 -17.36918 -17.11511 -16.85953 -16.29813 -16.06362 -15.28833 -15.27004 -14.70686 -14.40839 -14.10971 -13.87397 -13.83051 -13.76637 -13.63619 -13.47543 -13.14147 -12.95975 -12.68416 -12.24478 -11.95014 -11.54989 -11.52236 -10.92650 -10.80932 -10.70487 -10.56523 -10.30577 -9.93701 -8.29690 -6.46511 -0.59267 0.11293 1.14141 1.32913 1.44411 1.47769 1.54709 1.56213 2.32723 2.53711 2.68212 3.05522 3.29266 3.54927 3.60027 3.66611 3.75646 3.92475 4.03580 4.04912 4.34972 4.59152 4.66917 4.73298 4.79208 4.99782 5.09069 5.13182 5.21540 5.36862 5.41220 5.57064 5.62601 5.81754 6.45003 6.62357 6.76927 6.81346 7.20119 7.35333 8.82245 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043630 B = 0.002840 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.605409 B = 9858.276509 C =10470.515847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.017 3.983 3 C -0.175 4.175 4 C 0.133 3.867 5 N -0.521 5.521 6 C 0.155 3.845 7 C -0.202 4.202 8 C 0.516 3.484 9 O -0.508 6.508 10 O -0.344 6.344 11 C 0.063 3.937 12 C 0.499 3.501 13 O -0.583 6.583 14 N -0.698 5.698 15 C 0.267 3.733 16 C -0.558 4.558 17 H 0.087 0.913 18 C 0.004 3.996 19 N -0.931 5.931 20 Si 0.985 3.015 21 H -0.262 1.262 22 H -0.287 1.287 23 H -0.262 1.262 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.186 0.814 28 H 0.199 0.801 29 H 0.161 0.839 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.413 0.587 33 H -0.008 1.008 34 H -0.008 1.008 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.893 24.887 -1.824 26.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.010 3.990 3 C -0.194 4.194 4 C -0.022 4.022 5 N -0.231 5.231 6 C -0.003 4.003 7 C -0.206 4.206 8 C 0.361 3.639 9 O -0.398 6.398 10 O -0.260 6.260 11 C -0.014 4.014 12 C 0.284 3.716 13 O -0.464 6.464 14 N -0.349 5.349 15 C 0.144 3.856 16 C -0.595 4.595 17 H 0.105 0.895 18 C -0.196 4.196 19 N -0.569 5.569 20 Si 0.808 3.192 21 H -0.186 1.186 22 H -0.212 1.212 23 H -0.186 1.186 24 H 0.104 0.896 25 H 0.117 0.883 26 H 0.097 0.903 27 H 0.203 0.797 28 H 0.216 0.784 29 H 0.178 0.822 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.249 0.751 33 H 0.010 0.990 34 H 0.010 0.990 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.345 24.857 -1.763 26.280 hybrid contribution -1.079 -1.430 0.009 1.792 sum -9.424 23.427 -1.754 25.313 Atomic orbital electron populations 1.21150 0.87885 1.04744 1.04144 1.20822 0.98426 0.90961 0.88838 1.22468 0.95219 0.99204 1.02524 1.23797 0.92726 0.96817 0.88855 1.67857 1.41630 0.98939 1.14674 1.23244 0.90579 0.97225 0.89212 1.20057 0.95397 0.90859 1.14263 1.21187 0.85631 0.84390 0.72673 1.90784 1.14789 1.87693 1.46566 1.86586 1.41391 1.14637 1.83372 1.22780 0.92306 0.79010 1.07283 1.20692 0.89003 0.84883 0.76981 1.90694 1.18425 1.85871 1.51400 1.46025 1.12192 1.04910 1.71804 1.18622 0.89256 0.83302 0.94394 1.21586 0.94873 0.90607 1.52472 0.89533 1.26059 0.95974 1.03684 0.93841 1.70132 1.09644 1.27894 1.49228 0.85202 0.77924 0.76576 0.79491 1.18646 1.21209 1.18627 0.89555 0.88313 0.90347 0.79712 0.78419 0.82207 0.85479 0.85473 0.75054 0.98995 0.98994 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.73 8.86 71.24 0.63 -1.10 16 2 C 0.02 0.29 5.95 -19.39 -0.12 0.18 16 3 C -0.18 -1.98 9.78 22.32 0.22 -1.77 16 4 C 0.13 1.83 11.17 84.69 0.95 2.78 16 5 N -0.52 -11.55 10.35 -194.71 -2.01 -13.57 16 6 C 0.16 3.82 10.79 85.05 0.92 4.74 16 7 C -0.20 -4.72 5.89 -20.00 -0.12 -4.84 16 8 C 0.52 13.82 7.85 70.33 0.55 14.37 16 9 O -0.51 -13.65 13.29 19.92 0.26 -13.38 16 10 O -0.34 -10.65 9.05 -49.82 -0.45 -11.11 16 11 C 0.06 1.77 5.95 71.24 0.42 2.20 16 12 C 0.50 19.87 7.91 87.66 0.69 20.56 16 13 O -0.58 -29.35 16.50 15.76 0.26 -29.09 16 14 N -0.70 -28.58 5.55 -466.80 -2.59 -31.16 16 15 C 0.27 14.38 5.43 85.63 0.46 14.85 16 16 C -0.56 -29.75 9.28 25.60 0.24 -29.51 16 17 H 0.09 4.12 7.60 -2.91 -0.02 4.09 16 18 C 0.00 0.23 5.46 84.65 0.46 0.69 16 19 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 20 Si 0.99 41.78 29.54 68.60 2.03 43.81 16 21 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 22 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 24 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.10 0.77 8.07 -2.38 -0.02 0.75 16 26 H 0.08 1.45 5.93 -2.39 -0.01 1.44 16 27 H 0.19 0.56 8.06 -2.91 -0.02 0.54 16 28 H 0.20 1.16 8.06 -2.91 -0.02 1.13 16 29 H 0.16 4.27 7.64 -2.91 -0.02 4.24 16 30 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.41 13.47 8.32 -92.70 -0.77 12.70 16 33 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 34 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 35 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 Total: -1.00 -76.06 315.88 3.45 -72.61 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.36 Total: 14.18 kcal Atomic # 6 Polarization: 17.84 SS G_CDS: 5.31 Total: 23.16 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -4.32 Total: -100.17 kcal Atomic # 8 Polarization: -53.66 SS G_CDS: 0.07 Total: -53.58 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -76.06 3.45 -72.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785891811.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.124 kcal (2) G-P(sol) polarization free energy of solvation -76.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds