Wall clock time and date at job start Tue Mar 31 2020 01:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38163 * 120.50523 * 2 1 4 4 N 1.31801 * 120.90267 * 180.02562 * 3 2 1 5 5 C 1.31823 * 122.05955 * 359.97438 * 4 3 2 6 6 C 1.38128 * 120.89850 * 0.02562 * 5 4 3 7 7 C 1.39845 * 120.50207 * 180.02562 * 2 1 3 8 8 C 1.48052 * 120.92287 * 359.97438 * 7 2 1 9 9 O 1.21427 * 120.00195 * 353.92229 * 8 7 2 10 10 O 1.34674 * 119.99464 * 173.92778 * 8 7 2 11 11 C 1.45199 * 116.99646 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.46791 * 179.97438 * 11 10 8 13 13 O 1.21281 * 120.00223 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99808 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99986 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.46923 * 180.02562 * 15 14 12 17 17 H 1.07993 * 120.00180 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99611 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00236 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99808 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46956 * 90.00601 * 20 18 16 22 22 H 1.48501 * 109.47263 * 209.99771 * 20 18 16 23 23 H 1.48498 * 109.47502 * 330.00279 * 20 18 16 24 24 H 1.09002 * 109.46941 * 263.66011 * 1 2 3 25 25 H 1.09000 * 109.46943 * 23.65251 * 1 2 3 26 26 H 1.08993 * 109.47246 * 143.65906 * 1 2 3 27 27 H 1.08008 * 119.54887 * 0.04703 * 3 2 1 28 28 H 1.07993 * 119.54932 * 179.97438 * 5 4 3 29 29 H 1.08007 * 120.49882 * 179.97438 * 6 5 4 30 30 H 1.08994 * 109.47106 * 299.99280 * 11 10 8 31 31 H 1.09004 * 109.47381 * 59.99581 * 11 10 8 32 32 H 0.96999 * 120.00167 * 0.02562 * 14 12 11 33 33 H 1.09003 * 109.46577 * 299.99506 * 15 14 12 34 34 H 1.08988 * 109.46945 * 59.99803 * 15 14 12 35 35 H 0.97003 * 120.00397 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1904 0.0000 4 7 3.5263 1.1995 -0.0005 5 6 4.2338 0.0872 -0.0005 6 6 3.6143 -1.1474 -0.0006 7 6 2.2168 -1.2049 -0.0005 8 6 1.5087 -2.5051 -0.0006 9 8 0.3000 -2.5382 0.1112 10 8 2.2052 -3.6511 -0.1245 11 6 1.4453 -4.8884 -0.1158 12 6 2.3859 -6.0564 -0.2645 13 8 3.5790 -5.8650 -0.3680 14 7 1.9012 -7.3139 -0.2824 15 6 2.8156 -8.4495 -0.4263 16 6 2.0269 -9.7337 -0.4175 17 1 0.9523 -9.7067 -0.3145 18 6 2.6775 -10.9429 -0.5409 19 7 3.9863 -10.9758 -0.6658 20 14 1.7001 -12.5348 -0.5292 21 1 1.3091 -12.8857 -1.9182 22 1 2.5341 -13.6236 0.0401 23 1 0.4802 -12.3607 0.2995 24 1 -0.3633 -0.1135 1.0214 25 1 -0.3633 0.9413 -0.4123 26 1 -0.3633 -0.8277 -0.6089 27 1 1.6692 2.1263 0.0008 28 1 5.3123 0.1420 -0.0014 29 1 4.2003 -2.0547 -0.0010 30 1 0.9035 -4.9754 0.8259 31 1 0.7365 -4.8853 -0.9440 32 1 0.9469 -7.4671 -0.1999 33 1 3.3571 -8.3626 -1.3683 34 1 3.5244 -8.4523 0.4015 35 1 4.4441 -11.8267 -0.7523 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786046083.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:38 Heat of formation + Delta-G solvation = -87.681560 kcal Electronic energy + Delta-G solvation = -20231.166989 eV Core-core repulsion = 16808.487484 eV Total energy + Delta-G solvation = -3422.679505 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.20243 -39.96600 -38.73668 -36.62448 -34.31304 -33.81009 -32.59965 -32.43753 -29.38976 -27.82936 -26.75510 -25.06945 -22.95851 -22.45314 -21.37709 -20.01788 -18.55330 -17.71646 -16.93761 -16.82574 -16.43511 -15.74251 -15.46646 -15.23543 -14.99941 -14.90204 -14.30416 -14.20779 -13.74181 -13.20626 -13.10977 -12.95276 -12.73501 -12.61688 -12.04430 -11.90723 -11.83472 -11.05358 -10.96360 -10.87160 -10.78958 -10.38205 -10.22445 -9.81770 -9.48427 -9.30166 -9.25961 -8.82514 -8.04935 -6.23301 -4.30998 0.24441 0.72437 2.17137 2.27999 3.09543 3.20562 3.26956 3.29152 3.43549 3.82002 4.06813 4.27012 4.33490 4.42935 4.49058 4.60576 4.99067 5.10232 5.12035 5.14383 5.25317 5.27891 5.38021 5.41935 5.50309 5.71008 5.88209 6.18452 6.27719 7.16885 7.23614 7.40820 7.43824 7.53283 7.57131 7.87672 8.43513 8.65768 8.89827 9.35578 10.86808 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043841 B = 0.002827 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.518719 B = 9902.150888 C =10511.162344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.073 4.073 3 C 0.088 3.912 4 N -0.460 5.460 5 C 0.082 3.918 6 C -0.107 4.107 7 C -0.082 4.082 8 C 0.508 3.492 9 O -0.495 6.495 10 O -0.322 6.322 11 C 0.050 3.950 12 C 0.500 3.500 13 O -0.534 6.534 14 N -0.705 5.705 15 C 0.251 3.749 16 C -0.546 4.546 17 H 0.064 0.936 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.164 0.836 28 H 0.166 0.834 29 H 0.157 0.843 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.393 0.607 33 H 0.030 0.970 34 H 0.030 0.970 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.212 21.197 1.553 22.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.075 4.075 3 C -0.069 4.069 4 N -0.168 5.168 5 C -0.074 4.074 6 C -0.127 4.127 7 C -0.091 4.091 8 C 0.352 3.648 9 O -0.384 6.384 10 O -0.236 6.236 11 C -0.028 4.028 12 C 0.282 3.718 13 O -0.411 6.411 14 N -0.355 5.355 15 C 0.131 3.869 16 C -0.584 4.584 17 H 0.082 0.918 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.732 3.268 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 H 0.100 0.900 25 H 0.087 0.913 26 H 0.112 0.888 27 H 0.182 0.818 28 H 0.184 0.816 29 H 0.175 0.825 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.226 0.774 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.079 21.899 1.487 22.529 hybrid contribution -1.428 -1.953 0.054 2.420 sum -6.507 19.946 1.541 21.037 Atomic orbital electron populations 1.21038 0.88860 1.03759 1.04013 1.21137 0.98467 0.92202 0.95731 1.22718 0.89746 0.97143 0.97326 1.67540 1.08279 1.32052 1.08956 1.22838 1.00891 0.86965 0.96680 1.22687 0.93771 1.01139 0.95076 1.19342 0.94003 0.90389 1.05412 1.21082 0.85660 0.84686 0.73373 1.90798 1.14668 1.87693 1.45221 1.86588 1.40402 1.13944 1.82683 1.22936 0.94068 0.81009 1.04746 1.19847 0.88894 0.84038 0.78982 1.90711 1.15803 1.85103 1.49522 1.46369 1.11952 1.05605 1.71612 1.19189 0.88965 0.80917 0.97820 1.21198 0.93820 0.90480 1.52936 0.91754 1.24952 0.94997 0.99445 0.94576 1.69969 1.07460 1.26715 1.48024 0.86388 0.79709 0.82288 0.78369 1.20406 1.20950 1.19709 0.90042 0.91347 0.88792 0.81837 0.81641 0.82512 0.88245 0.88257 0.77380 0.95222 0.95208 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 8.84 36.01 0.32 -0.68 16 2 C -0.07 -0.72 5.93 -104.05 -0.62 -1.33 16 3 C 0.09 0.79 10.83 -17.59 -0.19 0.59 16 4 N -0.46 -4.71 10.33 -13.31 -0.14 -4.85 16 5 C 0.08 0.77 11.17 -17.60 -0.20 0.58 16 6 C -0.11 -1.12 9.71 -39.01 -0.38 -1.50 16 7 C -0.08 -0.95 5.91 -104.66 -0.62 -1.57 16 8 C 0.51 6.76 7.86 34.76 0.27 7.04 16 9 O -0.49 -6.85 13.32 -19.21 -0.26 -7.11 16 10 O -0.32 -4.84 9.13 -47.10 -0.43 -5.27 16 11 C 0.05 0.71 5.95 36.01 0.21 0.93 16 12 C 0.50 9.62 7.91 -10.98 -0.09 9.53 16 13 O -0.53 -12.58 16.50 -14.10 -0.23 -12.82 16 14 N -0.71 -14.11 5.55 -61.47 -0.34 -14.45 16 15 C 0.25 6.43 5.43 -5.19 -0.03 6.41 16 16 C -0.55 -14.39 9.28 -34.44 -0.32 -14.71 16 17 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 19 N -0.88 -25.54 13.29 55.43 0.74 -24.81 16 20 Si 0.91 20.42 29.54 -169.99 -5.02 15.40 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.40 8.06 -51.93 -0.42 -0.02 16 26 H 0.09 0.95 5.95 -51.93 -0.31 0.64 16 27 H 0.16 0.96 8.06 -52.48 -0.42 0.54 16 28 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.16 1.62 7.73 -52.48 -0.41 1.21 16 30 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.39 6.56 8.32 -40.82 -0.34 6.22 16 33 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.03 0.84 8.14 -51.94 -0.42 0.42 16 35 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 316.04 15.07 4.76 4.76 Total: -1.00 -32.94 316.04 -6.61 -39.55 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -3.97 Total: 2.65 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -1.73 Total: 6.94 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.26 Total: -44.10 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.92 Total: -25.20 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.94 -6.61 -39.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786046083.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.133 kcal (2) G-P(sol) polarization free energy of solvation -32.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds