Wall clock time and date at job start Tue Mar 31 2020 01:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38163 * 120.50523 * 2 1 4 4 N 1.31801 * 120.90267 * 180.02562 * 3 2 1 5 5 C 1.31823 * 122.05955 * 359.97438 * 4 3 2 6 6 C 1.38128 * 120.89850 * 0.02562 * 5 4 3 7 7 C 1.39845 * 120.50207 * 180.02562 * 2 1 3 8 8 C 1.48052 * 120.92287 * 359.97438 * 7 2 1 9 9 O 1.21427 * 120.00195 * 353.92229 * 8 7 2 10 10 O 1.34674 * 119.99464 * 173.92778 * 8 7 2 11 11 C 1.45199 * 116.99646 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.46791 * 179.97438 * 11 10 8 13 13 O 1.21281 * 120.00223 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99808 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99986 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.46923 * 180.02562 * 15 14 12 17 17 H 1.07993 * 120.00180 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99611 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00236 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99808 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46956 * 90.00601 * 20 18 16 22 22 H 1.48501 * 109.47263 * 209.99771 * 20 18 16 23 23 H 1.48498 * 109.47502 * 330.00279 * 20 18 16 24 24 H 1.09002 * 109.46941 * 263.66011 * 1 2 3 25 25 H 1.09000 * 109.46943 * 23.65251 * 1 2 3 26 26 H 1.08993 * 109.47246 * 143.65906 * 1 2 3 27 27 H 1.08008 * 119.54887 * 0.04703 * 3 2 1 28 28 H 1.07993 * 119.54932 * 179.97438 * 5 4 3 29 29 H 1.08007 * 120.49882 * 179.97438 * 6 5 4 30 30 H 1.08994 * 109.47106 * 299.99280 * 11 10 8 31 31 H 1.09004 * 109.47381 * 59.99581 * 11 10 8 32 32 H 0.96999 * 120.00167 * 0.02562 * 14 12 11 33 33 H 1.09003 * 109.46577 * 299.99506 * 15 14 12 34 34 H 1.08988 * 109.46945 * 59.99803 * 15 14 12 35 35 H 0.97003 * 120.00397 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1904 0.0000 4 7 3.5263 1.1995 -0.0005 5 6 4.2338 0.0872 -0.0005 6 6 3.6143 -1.1474 -0.0006 7 6 2.2168 -1.2049 -0.0005 8 6 1.5087 -2.5051 -0.0006 9 8 0.3000 -2.5382 0.1112 10 8 2.2052 -3.6511 -0.1245 11 6 1.4453 -4.8884 -0.1158 12 6 2.3859 -6.0564 -0.2645 13 8 3.5790 -5.8650 -0.3680 14 7 1.9012 -7.3139 -0.2824 15 6 2.8156 -8.4495 -0.4263 16 6 2.0269 -9.7337 -0.4175 17 1 0.9523 -9.7067 -0.3145 18 6 2.6775 -10.9429 -0.5409 19 7 3.9863 -10.9758 -0.6658 20 14 1.7001 -12.5348 -0.5292 21 1 1.3091 -12.8857 -1.9182 22 1 2.5341 -13.6236 0.0401 23 1 0.4802 -12.3607 0.2995 24 1 -0.3633 -0.1135 1.0214 25 1 -0.3633 0.9413 -0.4123 26 1 -0.3633 -0.8277 -0.6089 27 1 1.6692 2.1263 0.0008 28 1 5.3123 0.1420 -0.0014 29 1 4.2003 -2.0547 -0.0010 30 1 0.9035 -4.9754 0.8259 31 1 0.7365 -4.8853 -0.9440 32 1 0.9469 -7.4671 -0.1999 33 1 3.3571 -8.3626 -1.3683 34 1 3.5244 -8.4523 0.4015 35 1 4.4441 -11.8267 -0.7523 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786046083.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:37 Heat of formation + Delta-G solvation = -110.027141 kcal Electronic energy + Delta-G solvation = -20232.135966 eV Core-core repulsion = 16808.487484 eV Total energy + Delta-G solvation = -3423.648482 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.14912 -40.98412 -40.23518 -37.75459 -36.20218 -34.57836 -34.42865 -33.34920 -30.86518 -28.87681 -28.20978 -26.00567 -24.63105 -23.47028 -22.32777 -21.67599 -19.60107 -19.13586 -18.27796 -17.94459 -17.43321 -17.34343 -16.88131 -16.32423 -16.30153 -16.17189 -15.59113 -15.31781 -14.68707 -14.46139 -14.39674 -14.10533 -13.82815 -13.78471 -13.58477 -13.45420 -12.94781 -12.72558 -12.62573 -12.23874 -11.99405 -11.76902 -11.50804 -11.04723 -10.95891 -10.82609 -10.57913 -10.00901 -9.94672 -8.30436 -6.47005 -0.60405 0.00512 1.06918 1.31900 1.44305 1.45753 1.53084 1.57219 2.31055 2.50571 2.68124 3.05033 3.35127 3.44022 3.63906 3.70775 3.74529 3.86433 4.00302 4.02343 4.38685 4.54703 4.70772 4.74151 4.81857 4.96740 5.05154 5.08529 5.21023 5.36951 5.40515 5.55774 5.61639 5.81235 6.39572 6.61970 6.75827 6.80812 7.19342 7.34106 8.81661 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043841 B = 0.002827 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.518719 B = 9902.150888 C =10511.162344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.074 4.074 3 C 0.093 3.907 4 N -0.474 5.474 5 C 0.083 3.917 6 C -0.116 4.116 7 C -0.103 4.103 8 C 0.510 3.490 9 O -0.501 6.501 10 O -0.341 6.341 11 C 0.062 3.938 12 C 0.499 3.501 13 O -0.583 6.583 14 N -0.698 5.698 15 C 0.266 3.734 16 C -0.557 4.557 17 H 0.086 0.914 18 C 0.005 3.995 19 N -0.930 5.930 20 Si 0.984 3.016 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.255 1.255 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.197 0.803 28 H 0.189 0.811 29 H 0.151 0.849 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.413 0.587 33 H -0.007 1.007 34 H -0.007 1.007 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.574 22.257 1.781 23.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.076 4.076 3 C -0.064 4.064 4 N -0.183 5.183 5 C -0.073 4.073 6 C -0.136 4.136 7 C -0.112 4.112 8 C 0.355 3.645 9 O -0.390 6.390 10 O -0.256 6.256 11 C -0.015 4.015 12 C 0.285 3.715 13 O -0.463 6.463 14 N -0.349 5.349 15 C 0.144 3.856 16 C -0.594 4.594 17 H 0.104 0.896 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.807 3.193 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.179 1.179 24 H 0.101 0.899 25 H 0.116 0.884 26 H 0.094 0.906 27 H 0.214 0.786 28 H 0.206 0.794 29 H 0.169 0.831 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.249 0.751 33 H 0.010 0.990 34 H 0.011 0.989 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.495 22.987 1.722 24.239 hybrid contribution -0.662 -2.164 -0.018 2.263 sum -8.157 20.822 1.703 22.428 Atomic orbital electron populations 1.21036 0.87753 1.04617 1.03908 1.21367 0.99280 0.91782 0.95199 1.23251 0.89449 0.98026 0.95692 1.67627 1.09056 1.32225 1.09393 1.23187 1.02027 0.86315 0.95748 1.22702 0.93566 1.01525 0.95806 1.19468 0.94553 0.90126 1.07042 1.21355 0.85662 0.84573 0.72922 1.90791 1.14823 1.87713 1.45715 1.86577 1.41339 1.14550 1.83180 1.22809 0.92368 0.78957 1.07344 1.20659 0.88975 0.84850 0.77011 1.90688 1.18393 1.85872 1.51381 1.46033 1.12241 1.04897 1.71751 1.18630 0.89250 0.83261 0.94442 1.21609 0.94898 0.90596 1.52337 0.89561 1.26044 0.95964 1.03650 0.93865 1.70128 1.09634 1.27826 1.49285 0.85162 0.78362 0.76965 0.78770 1.19650 1.21064 1.17891 0.89886 0.88441 0.90565 0.78595 0.79387 0.83136 0.85435 0.85435 0.75058 0.98952 0.98913 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.69 8.84 71.24 0.63 -1.06 16 2 C -0.07 -1.32 5.93 -19.49 -0.12 -1.44 16 3 C 0.09 1.43 10.83 84.68 0.92 2.35 16 4 N -0.47 -8.84 10.33 -196.01 -2.03 -10.86 16 5 C 0.08 1.46 11.17 84.67 0.95 2.41 16 6 C -0.12 -2.41 9.71 22.64 0.22 -2.19 16 7 C -0.10 -2.31 5.91 -19.89 -0.12 -2.42 16 8 C 0.51 13.20 7.86 70.43 0.55 13.75 16 9 O -0.50 -13.17 13.32 20.07 0.27 -12.90 16 10 O -0.34 -10.15 9.13 -49.45 -0.45 -10.60 16 11 C 0.06 1.69 5.95 71.24 0.42 2.11 16 12 C 0.50 19.39 7.91 87.66 0.69 20.08 16 13 O -0.58 -28.57 16.50 15.76 0.26 -28.31 16 14 N -0.70 -28.01 5.55 -466.78 -2.59 -30.60 16 15 C 0.27 14.16 5.43 85.63 0.46 14.62 16 16 C -0.56 -29.36 9.28 25.60 0.24 -29.12 16 17 H 0.09 4.07 7.60 -2.91 -0.02 4.05 16 18 C 0.00 0.25 5.46 84.65 0.46 0.71 16 19 N -0.93 -55.13 13.29 21.45 0.28 -54.85 16 20 Si 0.98 41.42 29.54 68.60 2.03 43.45 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 24 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.10 0.82 8.06 -2.39 -0.02 0.80 16 26 H 0.08 1.42 5.95 -2.39 -0.01 1.40 16 27 H 0.20 1.58 8.06 -2.91 -0.02 1.55 16 28 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 29 H 0.15 3.24 7.73 -2.91 -0.02 3.21 16 30 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 31 H 0.13 2.82 8.14 -2.38 -0.02 2.80 16 32 H 0.41 13.19 8.32 -92.71 -0.77 12.42 16 33 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 34 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -73.48 316.04 3.44 -70.03 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.36 Total: 14.82 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: 5.31 Total: 19.82 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -4.33 Total: -96.30 kcal Atomic # 8 Polarization: -51.89 SS G_CDS: 0.08 Total: -51.81 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -73.48 3.44 -70.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786046083.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.993 kcal (2) G-P(sol) polarization free energy of solvation -73.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds