Wall clock time and date at job start Tue Mar 31 2020 01:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38168 * 119.54921 * 2 1 4 4 C 1.39841 * 118.99652 * 180.02562 * 3 2 1 5 5 C 1.48051 * 120.92775 * 180.02562 * 4 3 2 6 6 O 1.21427 * 120.00133 * 359.97438 * 5 4 3 7 7 O 1.34679 * 119.99774 * 179.97438 * 5 4 3 8 8 C 1.45198 * 116.99756 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.46939 * 180.02562 * 8 7 5 10 10 O 1.21280 * 120.00164 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99796 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99835 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.47234 * 179.97438 * 12 11 9 14 14 H 1.07997 * 119.99678 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00150 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00029 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99889 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46997 * 90.00101 * 17 15 13 19 19 H 1.48500 * 109.46961 * 210.00042 * 17 15 13 20 20 H 1.48497 * 109.47059 * 330.00318 * 17 15 13 21 21 C 1.39880 * 118.14254 * 0.02562 * 4 3 2 22 22 C 1.38119 * 119.00001 * 359.97438 * 21 4 3 23 23 N 1.31799 * 119.55404 * 180.02562 * 2 1 3 24 24 H 1.09005 * 109.46803 * 269.97500 * 1 2 3 25 25 H 1.08996 * 109.47268 * 29.97944 * 1 2 3 26 26 H 1.08996 * 109.46888 * 149.98053 * 1 2 3 27 27 H 1.07997 * 120.50513 * 359.97438 * 3 2 1 28 28 H 1.08999 * 109.46887 * 300.00249 * 8 7 5 29 29 H 1.08993 * 109.47344 * 60.00286 * 8 7 5 30 30 H 0.97000 * 120.00419 * 359.97438 * 11 9 8 31 31 H 1.08999 * 109.47134 * 299.99632 * 12 11 9 32 32 H 1.09001 * 109.47081 * 60.00035 * 12 11 9 33 33 H 0.97002 * 119.99683 * 180.02562 * 16 15 13 34 34 H 1.08004 * 120.50002 * 180.02562 * 21 4 3 35 35 H 1.08000 * 119.55376 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2020 0.0000 4 6 3.5868 1.1885 -0.0005 5 6 4.3599 2.4511 0.0000 6 8 3.7801 3.5180 0.0005 7 8 5.7062 2.4162 0.0000 8 6 6.3986 3.6925 0.0011 9 6 7.8870 3.4565 0.0003 10 8 8.3215 2.3241 -0.0007 11 7 8.7353 4.5037 0.0016 12 6 10.1823 4.2743 0.0014 13 6 10.9010 5.5989 0.0024 14 1 10.3364 6.5195 0.0028 15 6 12.2793 5.6354 0.0029 16 7 12.9064 6.7914 0.0044 17 14 13.2558 4.0429 0.0031 18 1 13.5151 3.6212 -1.3970 19 1 14.5479 4.2547 0.7036 20 1 12.4807 2.9870 0.7026 21 6 4.2346 -0.0513 -0.0016 22 6 3.4741 -1.2042 -0.0016 23 7 2.1571 -1.1465 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6493 2.1378 -0.0004 28 1 6.1202 4.2576 -0.8884 29 1 6.1203 4.2561 0.8915 30 1 8.3879 5.4093 0.0027 31 1 10.4606 3.7088 0.8907 32 1 10.4607 3.7110 -0.8893 33 1 13.8761 6.8171 0.0044 34 1 5.3132 -0.1061 -0.0017 35 1 3.9650 -2.1662 -0.0020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789022752.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:02 Heat of formation + Delta-G solvation = -87.080570 kcal Electronic energy + Delta-G solvation = -20020.584494 eV Core-core repulsion = 16597.931050 eV Total energy + Delta-G solvation = -3422.653444 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.16080 -40.10713 -38.89528 -36.59854 -34.44395 -33.63976 -32.84630 -32.47623 -29.65586 -28.05917 -27.38943 -25.12419 -23.20587 -22.22783 -21.04188 -20.20960 -18.39258 -17.79745 -17.04603 -16.84707 -16.43259 -16.16263 -15.83557 -15.28266 -15.07659 -14.83927 -14.65574 -14.12871 -13.75707 -13.32735 -13.24244 -12.81595 -12.72926 -12.66033 -12.42605 -12.15888 -12.07089 -11.14221 -11.07179 -10.95252 -10.81414 -10.34606 -10.03934 -9.97549 -9.58850 -9.43295 -9.38049 -8.85885 -8.33529 -6.27683 -4.31117 0.18899 0.66898 2.07969 2.22130 2.94188 3.22433 3.29425 3.36770 3.37573 3.69662 3.85681 4.24309 4.27521 4.38101 4.54570 4.63693 4.89427 5.04631 5.08398 5.08596 5.11783 5.13350 5.19263 5.27710 5.47990 5.62373 5.68514 6.03149 6.19446 6.67496 6.95812 7.02103 7.26793 7.36526 7.50315 7.98930 8.35777 8.61566 8.74208 9.31061 10.84016 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.044861 B = 0.002815 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.001904 B = 9945.876552 C =10544.130159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.119 3.881 3 C -0.111 4.111 4 C -0.071 4.071 5 C 0.509 3.491 6 O -0.497 6.497 7 O -0.322 6.322 8 C 0.050 3.950 9 C 0.502 3.498 10 O -0.536 6.536 11 N -0.698 5.698 12 C 0.222 3.778 13 C -0.547 4.547 14 H 0.081 0.919 15 C 0.078 3.922 16 N -0.890 5.890 17 Si 0.877 3.123 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.260 1.260 21 C -0.120 4.120 22 C 0.098 3.902 23 N -0.464 5.464 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.150 0.850 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.400 0.600 31 H 0.028 0.972 32 H 0.024 0.976 33 H 0.269 0.731 34 H 0.157 0.843 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.385 -11.867 0.026 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.019 4.019 3 C -0.131 4.131 4 C -0.080 4.080 5 C 0.352 3.648 6 O -0.386 6.386 7 O -0.236 6.236 8 C -0.028 4.028 9 C 0.286 3.714 10 O -0.414 6.414 11 N -0.348 5.348 12 C 0.101 3.899 13 C -0.585 4.585 14 H 0.099 0.901 15 C -0.126 4.126 16 N -0.527 5.527 17 Si 0.703 3.297 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.185 1.185 21 C -0.140 4.140 22 C -0.058 4.058 23 N -0.175 5.175 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.168 0.832 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.234 0.766 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.175 0.825 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -22.453 -12.995 0.029 25.942 hybrid contribution 1.106 0.814 -0.012 1.373 sum -21.347 -12.182 0.016 24.578 Atomic orbital electron populations 1.20737 0.87984 1.03872 1.03480 1.21298 0.97451 0.87523 0.95580 1.22128 0.92592 1.00544 0.97813 1.19459 0.93275 0.91496 1.03748 1.21088 0.81354 0.89147 0.73184 1.90847 1.71117 1.31393 1.45195 1.86573 1.18943 1.34796 1.83302 1.22906 0.91213 0.83487 1.05164 1.19867 0.86876 0.86180 0.78519 1.90701 1.78520 1.22404 1.49761 1.46067 1.08411 1.08011 1.72356 1.19569 0.75020 0.98238 0.97109 1.21057 0.92064 0.91588 1.53773 0.90111 1.24794 0.97449 0.96570 0.93771 1.69877 1.09156 1.24604 1.49048 0.86812 0.79830 0.83912 0.79110 1.19779 1.20814 1.18473 1.22665 1.03101 0.91893 0.96354 1.22852 0.88895 0.98756 0.95336 1.67405 1.10495 1.29486 1.10111 0.90059 0.90345 0.90103 0.83228 0.87993 0.87987 0.76644 0.95374 0.95833 0.92150 0.82521 0.81525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.60 10.17 36.01 0.37 -0.23 16 2 C 0.12 1.07 6.78 -82.63 -0.56 0.51 16 3 C -0.11 -1.06 9.31 -39.01 -0.36 -1.42 16 4 C -0.07 -0.79 5.91 -104.66 -0.62 -1.41 16 5 C 0.51 6.70 7.92 34.76 0.28 6.98 16 6 O -0.50 -7.19 16.23 -19.21 -0.31 -7.50 16 7 O -0.32 -4.67 9.11 -47.11 -0.43 -5.10 16 8 C 0.05 0.69 5.95 36.01 0.21 0.90 16 9 C 0.50 9.19 7.91 -10.99 -0.09 9.10 16 10 O -0.54 -11.87 16.50 -14.10 -0.23 -12.10 16 11 N -0.70 -13.40 5.55 -61.47 -0.34 -13.74 16 12 C 0.22 5.27 4.50 -5.19 -0.02 5.24 16 13 C -0.55 -14.58 9.83 -34.44 -0.34 -14.92 16 14 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 15 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 16 N -0.89 -25.95 13.96 55.43 0.77 -25.18 16 17 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 21 C -0.12 -1.19 9.71 -39.01 -0.38 -1.57 16 22 C 0.10 0.88 11.17 -17.60 -0.20 0.68 16 23 N -0.46 -4.64 10.24 -9.53 -0.10 -4.74 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.15 1.25 7.74 -52.49 -0.41 0.84 16 28 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.40 6.58 8.32 -40.82 -0.34 6.24 16 31 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 32 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 33 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 34 H 0.16 1.51 7.71 -52.48 -0.40 1.11 16 35 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 317.83 15.07 4.79 4.79 Total: -1.00 -33.45 317.83 -6.35 -39.80 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -4.03 Total: 1.57 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -1.81 Total: 5.93 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.33 Total: -43.65 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.97 Total: -24.70 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.45 -6.35 -39.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789022752.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.276 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds