Wall clock time and date at job start Tue Mar 31 2020 01:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38168 * 119.54921 * 2 1 4 4 C 1.39841 * 118.99652 * 180.02562 * 3 2 1 5 5 C 1.48051 * 120.92775 * 180.02562 * 4 3 2 6 6 O 1.21427 * 120.00133 * 359.97438 * 5 4 3 7 7 O 1.34679 * 119.99774 * 179.97438 * 5 4 3 8 8 C 1.45198 * 116.99756 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.46939 * 180.02562 * 8 7 5 10 10 O 1.21280 * 120.00164 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99796 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99835 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.47234 * 179.97438 * 12 11 9 14 14 H 1.07997 * 119.99678 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00150 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00029 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99889 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46997 * 90.00101 * 17 15 13 19 19 H 1.48500 * 109.46961 * 210.00042 * 17 15 13 20 20 H 1.48497 * 109.47059 * 330.00318 * 17 15 13 21 21 C 1.39880 * 118.14254 * 0.02562 * 4 3 2 22 22 C 1.38119 * 119.00001 * 359.97438 * 21 4 3 23 23 N 1.31799 * 119.55404 * 180.02562 * 2 1 3 24 24 H 1.09005 * 109.46803 * 269.97500 * 1 2 3 25 25 H 1.08996 * 109.47268 * 29.97944 * 1 2 3 26 26 H 1.08996 * 109.46888 * 149.98053 * 1 2 3 27 27 H 1.07997 * 120.50513 * 359.97438 * 3 2 1 28 28 H 1.08999 * 109.46887 * 300.00249 * 8 7 5 29 29 H 1.08993 * 109.47344 * 60.00286 * 8 7 5 30 30 H 0.97000 * 120.00419 * 359.97438 * 11 9 8 31 31 H 1.08999 * 109.47134 * 299.99632 * 12 11 9 32 32 H 1.09001 * 109.47081 * 60.00035 * 12 11 9 33 33 H 0.97002 * 119.99683 * 180.02562 * 16 15 13 34 34 H 1.08004 * 120.50002 * 180.02562 * 21 4 3 35 35 H 1.08000 * 119.55376 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2020 0.0000 4 6 3.5868 1.1885 -0.0005 5 6 4.3599 2.4511 0.0000 6 8 3.7801 3.5180 0.0005 7 8 5.7062 2.4162 0.0000 8 6 6.3986 3.6925 0.0011 9 6 7.8870 3.4565 0.0003 10 8 8.3215 2.3241 -0.0007 11 7 8.7353 4.5037 0.0016 12 6 10.1823 4.2743 0.0014 13 6 10.9010 5.5989 0.0024 14 1 10.3364 6.5195 0.0028 15 6 12.2793 5.6354 0.0029 16 7 12.9064 6.7914 0.0044 17 14 13.2558 4.0429 0.0031 18 1 13.5151 3.6212 -1.3970 19 1 14.5479 4.2547 0.7036 20 1 12.4807 2.9870 0.7026 21 6 4.2346 -0.0513 -0.0016 22 6 3.4741 -1.2042 -0.0016 23 7 2.1571 -1.1465 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6493 2.1378 -0.0004 28 1 6.1202 4.2576 -0.8884 29 1 6.1203 4.2561 0.8915 30 1 8.3879 5.4093 0.0027 31 1 10.4606 3.7088 0.8907 32 1 10.4607 3.7110 -0.8893 33 1 13.8761 6.8171 0.0044 34 1 5.3132 -0.1061 -0.0017 35 1 3.9650 -2.1662 -0.0020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789022752.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:02 Heat of formation + Delta-G solvation = -109.818626 kcal Electronic energy + Delta-G solvation = -20021.570490 eV Core-core repulsion = 16597.931050 eV Total energy + Delta-G solvation = -3423.639440 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.09583 -41.05287 -40.32156 -37.71724 -36.22218 -34.48437 -34.34164 -33.54052 -31.17551 -29.00738 -28.63239 -26.08049 -24.10908 -23.87762 -22.00659 -21.75687 -19.53255 -19.13537 -18.44996 -17.95020 -17.57350 -17.27809 -16.83067 -16.70400 -16.34628 -16.12624 -15.53546 -15.49182 -14.85184 -14.67106 -14.44269 -14.31094 -13.87662 -13.83092 -13.33378 -13.10449 -13.08939 -12.76436 -12.71572 -12.14086 -12.02885 -11.93868 -11.67697 -11.13516 -11.02191 -10.92954 -10.69096 -10.06031 -10.04683 -8.40516 -6.48264 -0.63522 -0.01815 1.00948 1.28583 1.33631 1.36604 1.47154 1.49416 2.27666 2.37136 2.65085 2.94915 3.25951 3.33442 3.59289 3.67362 3.82185 3.93952 3.99331 4.00084 4.41608 4.49251 4.64829 4.73641 4.80360 4.88553 4.94240 4.99757 5.03446 5.18358 5.22833 5.37812 5.54950 6.04338 6.33978 6.51726 6.69294 6.81292 7.09978 7.25252 8.73968 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.044861 B = 0.002815 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.001904 B = 9945.876552 C =10544.130159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.117 3.883 3 C -0.112 4.112 4 C -0.088 4.088 5 C 0.514 3.486 6 O -0.513 6.513 7 O -0.336 6.336 8 C 0.058 3.942 9 C 0.506 3.494 10 O -0.576 6.576 11 N -0.696 5.696 12 C 0.232 3.768 13 C -0.548 4.548 14 H 0.061 0.939 15 C 0.026 3.974 16 N -0.931 5.931 17 Si 0.938 3.062 18 H -0.265 1.265 19 H -0.275 1.275 20 H -0.258 1.258 21 C -0.126 4.126 22 C 0.100 3.900 23 N -0.480 5.480 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.161 0.839 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.413 0.587 31 H 0.018 0.982 32 H 0.017 0.983 33 H 0.273 0.727 34 H 0.156 0.844 35 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.895 -13.056 0.005 27.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.021 4.021 3 C -0.132 4.132 4 C -0.097 4.097 5 C 0.358 3.642 6 O -0.402 6.402 7 O -0.251 6.251 8 C -0.019 4.019 9 C 0.291 3.709 10 O -0.456 6.456 11 N -0.348 5.348 12 C 0.109 3.891 13 C -0.586 4.586 14 H 0.080 0.920 15 C -0.175 4.175 16 N -0.569 5.569 17 Si 0.761 3.239 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.182 1.182 21 C -0.146 4.146 22 C -0.056 4.056 23 N -0.191 5.191 24 H 0.111 0.889 25 H 0.113 0.887 26 H 0.102 0.898 27 H 0.178 0.822 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.250 0.750 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.082 0.918 34 H 0.173 0.827 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -23.998 -14.168 0.006 27.868 hybrid contribution 1.483 1.198 -0.004 1.907 sum -22.515 -12.970 0.003 25.983 Atomic orbital electron populations 1.20846 0.85739 1.04864 1.04498 1.21804 0.98936 0.86982 0.94356 1.22293 0.91978 1.01366 0.97562 1.19529 0.93883 0.90971 1.05347 1.21369 0.80681 0.89709 0.72409 1.90832 1.71120 1.32062 1.46182 1.86561 1.19856 1.35073 1.83609 1.22828 0.87742 0.83755 1.07565 1.20491 0.88608 0.85013 0.76744 1.90682 1.79641 1.23935 1.51340 1.45851 1.06946 1.09302 1.72660 1.19181 0.77476 0.96219 0.96224 1.21273 0.92326 0.92201 1.52815 0.92046 1.25610 0.98710 0.99586 0.93574 1.69982 1.09710 1.26688 1.50537 0.85854 0.78548 0.80004 0.79478 1.18976 1.19993 1.18175 1.22711 1.03163 0.91960 0.96748 1.23264 0.88707 0.99490 0.94183 1.67505 1.10946 1.30029 1.10597 0.88890 0.88654 0.89834 0.82183 0.85512 0.85519 0.75029 0.96395 0.96506 0.91826 0.82660 0.78976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.94 10.17 71.24 0.72 -0.22 16 2 C 0.12 1.88 6.78 42.55 0.29 2.17 16 3 C -0.11 -1.98 9.31 22.64 0.21 -1.77 16 4 C -0.09 -1.88 5.91 -19.89 -0.12 -2.00 16 5 C 0.51 12.92 7.92 70.43 0.56 13.47 16 6 O -0.51 -14.03 16.23 20.07 0.33 -13.71 16 7 O -0.34 -9.35 9.11 -49.49 -0.45 -9.80 16 8 C 0.06 1.49 5.95 71.24 0.42 1.91 16 9 C 0.51 17.94 7.91 87.66 0.69 18.63 16 10 O -0.58 -25.21 16.50 15.77 0.26 -24.95 16 11 N -0.70 -26.12 5.55 -466.78 -2.59 -28.71 16 12 C 0.23 10.92 4.50 85.63 0.38 11.30 16 13 C -0.55 -29.35 9.83 25.60 0.25 -29.10 16 14 H 0.06 3.45 7.84 -2.91 -0.02 3.42 16 15 C 0.03 1.42 5.47 84.65 0.46 1.88 16 16 N -0.93 -54.71 13.96 21.45 0.30 -54.41 16 17 Si 0.94 42.96 27.47 68.60 1.88 44.84 16 18 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 20 H -0.26 -11.60 6.54 99.48 0.65 -10.95 16 21 C -0.13 -2.39 9.71 22.64 0.22 -2.17 16 22 C 0.10 1.63 11.17 84.67 0.95 2.58 16 23 N -0.48 -8.79 10.24 -184.05 -1.89 -10.67 16 24 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 25 H 0.09 0.55 8.07 -2.39 -0.02 0.53 16 26 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 27 H 0.16 2.40 7.74 -2.91 -0.02 2.37 16 28 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.41 13.18 8.32 -92.71 -0.77 12.41 16 31 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 32 H 0.02 0.82 7.57 -2.39 -0.02 0.81 16 33 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 34 H 0.16 2.93 7.71 -2.91 -0.02 2.91 16 35 H 0.19 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -71.20 317.83 3.19 -68.01 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.30 Total: 12.69 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 5.05 Total: 16.70 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -4.18 Total: -93.80 kcal Atomic # 8 Polarization: -48.59 SS G_CDS: 0.14 Total: -48.46 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.88 Total: 44.84 kcal Total: -71.20 3.19 -68.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789022752.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.807 kcal (2) G-P(sol) polarization free energy of solvation -71.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds