Wall clock time and date at job start Tue Mar 31 2020 00:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86810 * 120.00074 * 2 1 4 4 H 1.48500 * 109.46806 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47019 * 299.99755 * 3 2 1 6 6 H 1.48497 * 109.46782 * 59.99979 * 3 2 1 7 7 C 1.40031 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99942 * 196.98051 * 7 2 1 9 9 C 1.41532 * 120.00016 * 16.97843 * 7 2 1 10 10 C 1.41183 * 120.99755 * 203.58693 * 9 7 2 11 11 C 1.37591 * 119.01612 * 179.97438 * 10 9 7 12 12 N 1.32084 * 121.10936 * 359.97438 * 11 10 9 13 13 C 1.32471 * 122.23277 * 359.97438 * 12 11 10 14 14 N 1.39461 * 119.58267 * 179.97438 * 13 12 11 15 15 C 1.34779 * 119.99996 * 5.23183 * 14 13 12 16 16 O 1.21278 * 120.00090 * 355.15558 * 15 14 13 17 17 C 1.50703 * 120.00362 * 175.15122 * 15 14 13 18 18 C 1.52994 * 109.47138 * 180.02562 * 17 15 14 19 19 O 1.43756 * 109.63382 * 294.36298 * 18 17 15 20 20 C 1.44783 * 104.81888 * 215.81212 * 19 18 17 21 21 C 1.54916 * 101.72259 * 36.10320 * 20 19 18 22 22 O 1.43367 * 109.62963 * 175.00371 * 18 17 15 23 23 C 1.38604 * 120.83629 * 0.26107 * 13 12 11 24 24 H 0.97006 * 119.99491 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.48966 * 0.02562 * 10 9 7 26 26 H 1.07992 * 119.44390 * 180.02562 * 11 10 9 27 27 H 0.96997 * 120.00485 * 185.23676 * 14 13 12 28 28 H 1.09001 * 109.46832 * 59.99783 * 17 15 14 29 29 H 1.09004 * 109.46709 * 300.00523 * 17 15 14 30 30 H 1.08994 * 109.62966 * 54.60375 * 18 17 15 31 31 H 1.08998 * 110.97547 * 277.99119 * 20 19 18 32 32 H 1.09002 * 111.01137 * 154.22205 * 20 19 18 33 33 H 1.08992 * 110.69313 * 206.04461 * 21 20 19 34 34 H 1.08998 * 110.84490 * 82.90549 * 21 20 19 35 35 H 1.08001 * 120.59946 * 179.72635 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8827 2.3964 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0522 -1.2332 0.2726 9 6 1.3461 -2.4115 -0.3590 10 6 1.8235 -3.6650 0.0816 11 6 1.1485 -4.8047 -0.2907 12 7 0.0684 -4.7413 -1.0484 13 6 -0.4205 -3.5909 -1.4870 14 7 -1.5645 -3.5883 -2.2847 15 6 -2.2259 -4.7392 -2.5179 16 8 -1.7788 -5.7894 -2.1081 17 6 -3.5213 -4.7212 -3.2879 18 6 -4.0615 -6.1473 -3.4106 19 8 -3.1683 -6.9346 -4.2162 20 6 -4.0313 -7.8236 -4.9652 21 6 -5.2561 -6.9156 -5.2399 22 8 -5.3496 -6.1220 -4.0396 23 6 0.1939 -2.3901 -1.1680 24 1 -0.4850 0.8401 -0.0004 25 1 2.7049 -3.7283 0.7025 26 1 1.5073 -5.7671 0.0428 27 1 -1.8841 -2.7583 -2.6717 28 1 -3.3468 -4.3114 -4.2828 29 1 -4.2479 -4.1017 -2.7621 30 1 -4.1465 -6.5932 -2.4197 31 1 -4.3138 -8.6894 -4.3663 32 1 -3.5587 -8.1337 -5.8972 33 1 -6.1564 -7.5144 -5.3769 34 1 -5.0814 -6.2810 -6.1087 35 1 -0.2054 -1.4547 -1.5313 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793671689.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:44 Heat of formation + Delta-G solvation = -84.639413 kcal Electronic energy + Delta-G solvation = -20996.756747 eV Core-core repulsion = 17574.209159 eV Total energy + Delta-G solvation = -3422.547588 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.53116 -39.35575 -37.68831 -35.05866 -34.31557 -33.69082 -31.98687 -30.52955 -29.20391 -27.97822 -25.98774 -23.68674 -23.15276 -21.94802 -21.21050 -19.63169 -17.77977 -17.66089 -16.87635 -16.33537 -16.12466 -15.64572 -15.17062 -14.76896 -14.40060 -14.20173 -13.97913 -13.60268 -13.56020 -12.85863 -12.76083 -12.65245 -12.57207 -12.51436 -11.88523 -11.48538 -11.40039 -11.20545 -10.89368 -10.36285 -10.27601 -10.13702 -9.80797 -9.70993 -9.35242 -9.29310 -7.99642 -7.69565 -7.01650 -6.80945 -4.60889 2.58098 2.77546 3.01571 3.07101 3.20022 3.21660 3.47789 3.65096 3.84633 4.05123 4.40416 4.66862 4.68345 4.79324 4.97521 5.06704 5.18591 5.33847 5.39826 5.61644 5.64905 5.70756 5.88861 6.03226 6.60301 6.67119 6.82129 6.95298 6.96684 7.10723 7.40578 7.47881 7.78569 7.94552 8.23014 8.43816 8.71364 8.74862 8.92087 9.71660 10.05867 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033430 B = 0.003697 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.372714 B = 7571.052440 C = 8214.536901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.078 3.922 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.456 4.456 8 H 0.083 0.917 9 C 0.143 3.857 10 C -0.286 4.286 11 C 0.119 3.881 12 N -0.554 5.554 13 C 0.338 3.662 14 N -0.659 5.659 15 C 0.502 3.498 16 O -0.471 6.471 17 C -0.156 4.156 18 C 0.250 3.750 19 O -0.357 6.357 20 C 0.013 3.987 21 C 0.020 3.980 22 O -0.387 6.387 23 C -0.245 4.245 24 H 0.281 0.719 25 H 0.102 0.898 26 H 0.123 0.877 27 H 0.407 0.593 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.484 -5.430 -9.215 14.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.487 4.487 8 H 0.101 0.899 9 C 0.135 3.865 10 C -0.309 4.309 11 C -0.035 4.035 12 N -0.273 5.273 13 C 0.113 3.887 14 N -0.306 5.306 15 C 0.286 3.714 16 O -0.340 6.340 17 C -0.197 4.197 18 C 0.155 3.845 19 O -0.277 6.277 20 C -0.064 4.064 21 C -0.056 4.056 22 O -0.308 6.308 23 C -0.270 4.270 24 H 0.092 0.908 25 H 0.120 0.880 26 H 0.141 0.859 27 H 0.242 0.758 28 H 0.118 0.882 29 H 0.129 0.871 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.125 0.875 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.806 -6.749 -9.080 14.972 hybrid contribution 0.513 2.041 0.010 2.105 sum -9.293 -4.708 -9.071 13.813 Atomic orbital electron populations 1.69793 1.07708 1.29289 1.34457 1.25962 0.94757 1.01501 0.91872 0.86220 0.81056 0.80615 0.78624 1.18275 1.19613 1.19895 1.19607 0.97973 0.90726 1.40352 0.89938 1.17562 0.89832 0.92277 0.86821 1.21893 1.05306 0.93895 1.09851 1.21764 0.90951 0.96816 0.93975 1.67233 1.15464 1.26473 1.18164 1.18191 0.87211 0.90813 0.92457 1.43424 1.26435 1.10585 1.50126 1.20242 0.85509 0.84451 0.81198 1.90809 1.66373 1.29424 1.47415 1.22086 0.96917 0.97809 1.02883 1.23721 0.75983 0.90922 0.93885 1.89435 1.29233 1.50784 1.58244 1.24386 0.90366 0.94161 0.97507 1.24189 0.99514 0.93336 0.88584 1.88884 1.31322 1.72699 1.37889 1.21533 1.02595 0.95528 1.07358 0.90778 0.88011 0.85914 0.75809 0.88209 0.87073 0.88669 0.90638 0.87486 0.88331 0.90668 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.38 10.92 55.55 0.61 -18.77 16 2 C 0.08 1.89 5.20 -17.35 -0.09 1.80 16 3 Si 0.91 17.88 29.59 -169.99 -5.03 12.85 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.46 -11.76 9.12 -37.66 -0.34 -12.11 16 8 H 0.08 2.05 7.90 -52.49 -0.41 1.63 16 9 C 0.14 3.80 5.60 -106.55 -0.60 3.21 16 10 C -0.29 -7.11 9.90 -38.70 -0.38 -7.50 16 11 C 0.12 2.92 11.15 -17.68 -0.20 2.73 16 12 N -0.55 -14.46 7.85 -12.52 -0.10 -14.56 16 13 C 0.34 8.35 7.42 -154.71 -1.15 7.20 16 14 N -0.66 -13.17 5.39 -11.49 -0.06 -13.23 16 15 C 0.50 9.70 7.68 -10.98 -0.08 9.61 16 16 O -0.47 -11.08 13.70 -7.90 -0.11 -11.19 16 17 C -0.16 -2.17 5.80 -27.88 -0.16 -2.34 16 18 C 0.25 3.56 3.55 37.15 0.13 3.69 16 19 O -0.36 -5.43 10.64 -64.51 -0.69 -6.12 16 20 C 0.01 0.12 7.95 38.17 0.30 0.43 16 21 C 0.02 0.18 8.08 38.17 0.31 0.49 16 22 O -0.39 -4.78 11.21 -59.04 -0.66 -5.44 16 23 C -0.24 -6.26 8.62 -38.48 -0.33 -6.60 16 24 H 0.28 6.23 8.29 -40.82 -0.34 5.89 16 25 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 26 H 0.12 2.64 8.06 -52.49 -0.42 2.21 16 27 H 0.41 6.61 8.70 -40.82 -0.36 6.25 16 28 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.10 1.45 7.95 -51.93 -0.41 1.03 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.13 3.21 6.20 -52.49 -0.33 2.88 16 LS Contribution 304.69 15.07 4.59 4.59 Total: -1.00 -33.14 304.69 -8.06 -41.20 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -4.02 Total: 10.06 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -2.59 Total: 0.61 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.45 Total: -46.57 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -1.46 Total: -22.75 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.14 -8.06 -41.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793671689.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.439 kcal (2) G-P(sol) polarization free energy of solvation -33.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds