Wall clock time and date at job start Tue Mar 31 2020 00:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86810 * 120.00074 * 2 1 4 4 H 1.48500 * 109.46806 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47019 * 299.99755 * 3 2 1 6 6 H 1.48497 * 109.46782 * 59.99979 * 3 2 1 7 7 C 1.40031 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99942 * 196.98051 * 7 2 1 9 9 C 1.41532 * 120.00016 * 16.97843 * 7 2 1 10 10 C 1.41183 * 120.99755 * 203.58693 * 9 7 2 11 11 C 1.37591 * 119.01612 * 179.97438 * 10 9 7 12 12 N 1.32084 * 121.10936 * 359.97438 * 11 10 9 13 13 C 1.32471 * 122.23277 * 359.97438 * 12 11 10 14 14 N 1.39461 * 119.58267 * 179.97438 * 13 12 11 15 15 C 1.34779 * 119.99996 * 5.23183 * 14 13 12 16 16 O 1.21278 * 120.00090 * 355.15558 * 15 14 13 17 17 C 1.50703 * 120.00362 * 175.15122 * 15 14 13 18 18 C 1.52994 * 109.47138 * 180.02562 * 17 15 14 19 19 O 1.43756 * 109.63382 * 294.36298 * 18 17 15 20 20 C 1.44783 * 104.81888 * 215.81212 * 19 18 17 21 21 C 1.54916 * 101.72259 * 36.10320 * 20 19 18 22 22 O 1.43367 * 109.62963 * 175.00371 * 18 17 15 23 23 C 1.38604 * 120.83629 * 0.26107 * 13 12 11 24 24 H 0.97006 * 119.99491 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.48966 * 0.02562 * 10 9 7 26 26 H 1.07992 * 119.44390 * 180.02562 * 11 10 9 27 27 H 0.96997 * 120.00485 * 185.23676 * 14 13 12 28 28 H 1.09001 * 109.46832 * 59.99783 * 17 15 14 29 29 H 1.09004 * 109.46709 * 300.00523 * 17 15 14 30 30 H 1.08994 * 109.62966 * 54.60375 * 18 17 15 31 31 H 1.08998 * 110.97547 * 277.99119 * 20 19 18 32 32 H 1.09002 * 111.01137 * 154.22205 * 20 19 18 33 33 H 1.08992 * 110.69313 * 206.04461 * 21 20 19 34 34 H 1.08998 * 110.84490 * 82.90549 * 21 20 19 35 35 H 1.08001 * 120.59946 * 179.72635 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8827 2.3964 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0522 -1.2332 0.2726 9 6 1.3461 -2.4115 -0.3590 10 6 1.8235 -3.6650 0.0816 11 6 1.1485 -4.8047 -0.2907 12 7 0.0684 -4.7413 -1.0484 13 6 -0.4205 -3.5909 -1.4870 14 7 -1.5645 -3.5883 -2.2847 15 6 -2.2259 -4.7392 -2.5179 16 8 -1.7788 -5.7894 -2.1081 17 6 -3.5213 -4.7212 -3.2879 18 6 -4.0615 -6.1473 -3.4106 19 8 -3.1683 -6.9346 -4.2162 20 6 -4.0313 -7.8236 -4.9652 21 6 -5.2561 -6.9156 -5.2399 22 8 -5.3496 -6.1220 -4.0396 23 6 0.1939 -2.3901 -1.1680 24 1 -0.4850 0.8401 -0.0004 25 1 2.7049 -3.7283 0.7025 26 1 1.5073 -5.7671 0.0428 27 1 -1.8841 -2.7583 -2.6717 28 1 -3.3468 -4.3114 -4.2828 29 1 -4.2479 -4.1017 -2.7621 30 1 -4.1465 -6.5932 -2.4197 31 1 -4.3138 -8.6894 -4.3663 32 1 -3.5587 -8.1337 -5.8972 33 1 -6.1564 -7.5144 -5.3769 34 1 -5.0814 -6.2810 -6.1087 35 1 -0.2054 -1.4547 -1.5313 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793671689.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:44 Heat of formation + Delta-G solvation = -107.036561 kcal Electronic energy + Delta-G solvation = -20997.727960 eV Core-core repulsion = 17574.209159 eV Total energy + Delta-G solvation = -3423.518801 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.63016 -40.91125 -39.44080 -36.15962 -36.00001 -35.46073 -33.12701 -32.42489 -30.63055 -29.28368 -27.91312 -24.85718 -24.08359 -23.82868 -22.80092 -21.25656 -19.46851 -18.96937 -18.01730 -17.61591 -17.39885 -17.01241 -16.87626 -16.08187 -15.99834 -15.79523 -15.44090 -15.11212 -14.64770 -14.42541 -14.33156 -14.24277 -13.68785 -13.66887 -13.24223 -13.03943 -12.92155 -12.66534 -12.29585 -12.06983 -11.90457 -11.49027 -11.18432 -11.15112 -11.03250 -10.71557 -9.95572 -9.58671 -8.86902 -8.64977 -6.56630 0.74531 0.99338 1.41791 1.53827 1.57255 1.88240 2.00331 2.20597 2.55144 2.80215 2.98196 3.60435 3.67601 3.74871 3.85877 4.03923 4.10774 4.22142 4.30923 4.55161 4.64684 4.66050 4.75824 4.81524 4.85946 4.92787 4.98374 5.08513 5.22113 5.48189 5.64753 5.90320 6.05110 6.14186 6.46920 6.60469 6.79391 6.82707 7.31247 7.84714 8.25899 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033430 B = 0.003697 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.372714 B = 7571.052440 C = 8214.536901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.040 3.960 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.261 1.261 6 H -0.266 1.266 7 C -0.484 4.484 8 H 0.083 0.917 9 C 0.114 3.886 10 C -0.300 4.300 11 C 0.113 3.887 12 N -0.580 5.580 13 C 0.333 3.667 14 N -0.653 5.653 15 C 0.499 3.501 16 O -0.516 6.516 17 C -0.141 4.141 18 C 0.252 3.748 19 O -0.393 6.393 20 C 0.004 3.996 21 C 0.018 3.982 22 O -0.394 6.394 23 C -0.262 4.262 24 H 0.293 0.707 25 H 0.115 0.885 26 H 0.148 0.852 27 H 0.423 0.577 28 H 0.124 0.876 29 H 0.138 0.862 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.090 0.910 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.436 -4.361 -10.371 15.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.177 4.177 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.185 1.185 6 H -0.190 1.190 7 C -0.515 4.515 8 H 0.101 0.899 9 C 0.106 3.894 10 C -0.324 4.324 11 C -0.041 4.041 12 N -0.300 5.300 13 C 0.108 3.892 14 N -0.301 5.301 15 C 0.286 3.714 16 O -0.389 6.389 17 C -0.181 4.181 18 C 0.157 3.843 19 O -0.314 6.314 20 C -0.071 4.071 21 C -0.057 4.057 22 O -0.315 6.315 23 C -0.287 4.287 24 H 0.104 0.896 25 H 0.133 0.867 26 H 0.166 0.834 27 H 0.261 0.739 28 H 0.142 0.858 29 H 0.156 0.844 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.108 0.892 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.799 -5.681 -10.264 15.945 hybrid contribution 0.744 1.640 0.342 1.833 sum -10.055 -4.041 -9.921 14.692 Atomic orbital electron populations 1.69815 1.09073 1.31036 1.33580 1.26832 0.95567 1.04601 0.90731 0.85066 0.79338 0.75662 0.79093 1.18249 1.18512 1.19027 1.19890 0.98295 0.91722 1.41569 0.89852 1.17999 0.90651 0.93299 0.87449 1.22078 1.06071 0.93744 1.10515 1.22205 0.90574 0.97894 0.93402 1.67359 1.16308 1.27165 1.19214 1.18467 0.88164 0.90269 0.92348 1.43475 1.25204 1.12004 1.49389 1.21176 0.86583 0.83266 0.80412 1.90781 1.67834 1.30958 1.49301 1.22047 0.94058 0.98619 1.03367 1.23514 0.76733 0.90665 0.93420 1.89404 1.31094 1.51943 1.58933 1.24699 0.90480 0.93909 0.98042 1.24471 1.00255 0.93322 0.87656 1.88866 1.30016 1.73379 1.39249 1.21524 1.03162 0.95749 1.08271 0.89587 0.86666 0.83433 0.73871 0.85760 0.84432 0.90657 0.90039 0.85305 0.85418 0.89212 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.61 10.92 21.84 0.24 -39.37 16 2 C 0.04 1.92 5.20 85.29 0.44 2.36 16 3 Si 0.99 35.80 29.59 68.60 2.03 37.83 16 4 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 5 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 6 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 7 C -0.48 -25.28 9.12 23.52 0.21 -25.06 16 8 H 0.08 4.18 7.90 -2.91 -0.02 4.16 16 9 C 0.11 6.19 5.60 -21.12 -0.12 6.07 16 10 C -0.30 -15.27 9.90 22.84 0.23 -15.04 16 11 C 0.11 5.63 11.15 84.50 0.94 6.57 16 12 N -0.58 -30.88 7.85 -193.54 -1.52 -32.40 16 13 C 0.33 16.75 7.42 132.76 0.98 17.73 16 14 N -0.65 -26.04 5.39 -308.65 -1.66 -27.70 16 15 C 0.50 19.18 7.68 87.66 0.67 19.85 16 16 O -0.52 -24.76 13.70 9.84 0.13 -24.62 16 17 C -0.14 -3.69 5.80 29.85 0.17 -3.52 16 18 C 0.25 6.95 3.55 71.98 0.26 7.20 16 19 O -0.39 -11.70 10.64 -120.98 -1.29 -12.99 16 20 C 0.00 0.08 7.95 72.64 0.58 0.66 16 21 C 0.02 0.27 8.08 72.64 0.59 0.86 16 22 O -0.39 -8.90 11.21 -126.22 -1.42 -10.32 16 23 C -0.26 -13.67 8.62 22.99 0.20 -13.47 16 24 H 0.29 12.70 8.29 -92.70 -0.77 11.93 16 25 H 0.12 5.35 8.06 -2.91 -0.02 5.32 16 26 H 0.15 6.37 8.06 -2.91 -0.02 6.35 16 27 H 0.42 13.47 8.70 -92.71 -0.81 12.66 16 28 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.14 2.88 8.14 -2.39 -0.02 2.86 16 30 H 0.08 2.33 7.95 -2.39 -0.02 2.31 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.13 6.42 6.20 -2.91 -0.02 6.41 16 Total: -1.00 -72.92 304.69 2.00 -70.93 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: 0.32 Total: 34.43 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 5.16 Total: 4.22 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -2.94 Total: -99.48 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -2.57 Total: -47.93 kcal Atomic # 14 Polarization: 35.80 SS G_CDS: 2.03 Total: 37.83 kcal Total: -72.92 2.00 -70.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793671689.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.110 kcal (2) G-P(sol) polarization free energy of solvation -72.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds