Wall clock time and date at job start Mon Mar 30 2020 23:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99962 * 2 1 4 4 H 1.48510 * 109.47031 * 239.99817 * 3 2 1 5 5 H 1.48500 * 109.47510 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47409 * 119.99951 * 3 2 1 7 7 C 1.37872 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99656 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00365 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47045 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.46980 * 180.02562 * 10 9 7 12 12 C 1.34234 * 116.99947 * 179.97438 * 11 10 9 13 13 O 1.20822 * 120.00090 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99997 * 179.72219 * 12 11 10 15 15 H 1.09000 * 115.54686 * 34.33086 * 14 12 11 16 16 C 1.52993 * 117.49961 * 248.62577 * 14 12 11 17 17 C 1.52991 * 117.50010 * 180.02562 * 14 12 11 18 18 H 1.09005 * 117.49711 * 359.97438 * 17 14 12 19 19 C 1.50704 * 117.50122 * 215.00385 * 17 14 12 20 20 C 1.38244 * 119.97199 * 299.72623 * 19 17 14 21 21 C 1.38199 * 120.02317 * 179.76556 * 20 19 17 22 22 C 1.38465 * 119.97553 * 0.50922 * 21 20 19 23 23 F 1.35095 * 120.02753 * 179.77071 * 22 21 20 24 24 C 1.38466 * 119.94731 * 359.74054 * 22 21 20 25 25 C 1.38196 * 119.97252 * 0.02562 * 24 22 21 26 26 H 0.97002 * 119.99939 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47336 * 59.99637 * 9 7 2 28 28 H 1.08999 * 109.46911 * 299.99255 * 9 7 2 29 29 H 1.08997 * 109.47282 * 60.00186 * 10 9 7 30 30 H 1.09002 * 109.47256 * 299.99413 * 10 9 7 31 31 H 1.08996 * 117.50008 * 359.97438 * 16 14 12 32 32 H 1.09000 * 117.50123 * 145.01993 * 16 14 12 33 33 H 1.07995 * 119.98940 * 0.02562 * 20 19 17 34 34 H 1.07999 * 120.01703 * 180.25084 * 21 20 19 35 35 H 1.07993 * 120.01157 * 180.02562 * 24 22 21 36 36 H 1.07998 * 119.98902 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5192 -4.9195 -0.0001 12 6 2.2503 -6.0453 -0.0007 13 8 3.4568 -5.9821 -0.0002 14 6 1.5661 -7.3880 0.0050 15 1 0.6268 -7.4394 -0.5457 16 6 1.6913 -8.2393 1.2700 17 6 2.4545 -8.6336 0.0046 18 1 3.5340 -8.4818 -0.0002 19 6 1.9644 -9.8377 -0.7576 20 6 0.7680 -10.4360 -0.4086 21 6 0.3151 -11.5373 -1.1099 22 6 1.0653 -12.0480 -2.1557 23 9 0.6259 -13.1274 -2.8390 24 6 2.2660 -11.4510 -2.5010 25 6 2.7145 -10.3469 -1.8014 26 1 -0.4850 0.8401 -0.0004 27 1 0.6245 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8904 29 1 2.8718 -3.6043 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 2.2688 -7.8284 2.0980 32 1 0.8342 -8.8509 1.5520 33 1 0.1849 -10.0400 0.4097 34 1 -0.6216 -12.0021 -0.8398 35 1 2.8518 -11.8482 -3.3167 36 1 3.6512 -9.8813 -2.0702 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798284717.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:00 Heat of formation + Delta-G solvation = -95.080673 kcal Electronic energy + Delta-G solvation = -19785.632189 eV Core-core repulsion = 16342.711873 eV Total energy + Delta-G solvation = -3442.920316 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.18478 -40.51985 -39.46263 -37.08265 -35.73695 -33.36166 -31.51278 -30.67492 -30.20810 -25.89923 -24.28576 -24.10280 -23.09626 -21.17946 -20.82133 -19.99788 -18.17982 -17.69859 -16.72048 -16.32433 -15.98683 -15.93466 -15.85495 -15.78688 -14.90801 -14.55487 -13.94467 -13.82671 -13.46657 -13.24077 -12.99489 -12.84931 -12.37913 -12.22987 -11.87374 -11.37025 -11.28112 -11.07954 -10.97350 -10.78742 -10.74389 -10.68062 -10.25960 -9.67499 -9.65316 -9.46180 -9.33461 -8.77561 -8.45821 -6.11944 -4.16619 0.72523 0.88264 2.34008 2.93693 3.22399 3.28913 3.33089 3.36659 3.72956 3.93148 4.25939 4.35468 4.39239 4.46112 4.55833 4.61343 4.87110 4.91540 5.11929 5.20183 5.24528 5.38467 5.57445 5.62018 5.74265 5.75194 5.78967 5.92401 6.05903 6.06477 6.20423 6.52997 6.60694 6.94865 7.53474 7.60122 7.84666 8.15799 8.23847 8.88700 9.47834 10.99548 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040777 B = 0.002503 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.503078 B =11186.029395 C =11283.124648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.351 6.351 12 C 0.485 3.515 13 O -0.518 6.518 14 C -0.150 4.150 15 H 0.137 0.863 16 C -0.140 4.140 17 C -0.087 4.087 18 H 0.131 0.869 19 C -0.061 4.061 20 C -0.089 4.089 21 C -0.150 4.150 22 C 0.092 3.908 23 F -0.142 7.142 24 C -0.151 4.151 25 C -0.079 4.079 26 H 0.264 0.736 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.508 -24.018 -0.947 24.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.267 6.267 12 C 0.328 3.672 13 O -0.408 6.408 14 C -0.169 4.169 15 H 0.155 0.845 16 C -0.177 4.177 17 C -0.105 4.105 18 H 0.149 0.851 19 C -0.061 4.061 20 C -0.107 4.107 21 C -0.169 4.169 22 C 0.073 3.927 23 F -0.120 7.120 24 C -0.170 4.170 25 C -0.097 4.097 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.680 -23.855 -0.975 23.934 hybrid contribution 0.417 0.854 -0.237 0.979 sum 2.097 -23.001 -1.212 23.128 Atomic orbital electron populations 1.69963 1.06103 1.27136 1.49642 1.24982 0.94925 0.99396 0.94832 0.86524 0.79482 0.82444 0.78796 1.20054 1.21102 1.20049 1.20938 0.93140 0.90121 1.52390 0.92305 1.19168 0.94180 0.88980 0.98909 1.23680 0.96412 0.78672 1.00974 1.86516 1.42280 1.15654 1.82267 1.22350 0.85854 0.86344 0.72614 1.90621 1.15665 1.88219 1.46255 1.21882 1.02333 0.87062 1.05640 0.84547 1.23202 1.02909 1.00530 0.91061 1.21141 0.99337 0.90874 0.99185 0.85100 1.19173 0.94955 0.95732 0.96263 1.20981 0.95597 0.94780 0.99373 1.21132 1.01029 0.98410 0.96294 1.17764 0.94820 0.86417 0.93673 1.91499 1.89407 1.52553 1.78562 1.21153 0.95880 0.97768 1.02152 1.20905 1.00009 0.94742 0.94005 0.92621 0.95336 0.95318 0.92261 0.92260 0.87260 0.86887 0.84544 0.84577 0.84575 0.84594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 9 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 10 C 0.08 1.67 5.40 37.16 0.20 1.87 16 11 O -0.35 -7.01 10.22 -39.27 -0.40 -7.41 16 12 C 0.49 8.29 7.74 36.01 0.28 8.57 16 13 O -0.52 -9.94 16.01 -18.75 -0.30 -10.24 16 14 C -0.15 -1.80 5.94 -91.78 -0.54 -2.35 16 15 H 0.14 1.47 8.14 -51.93 -0.42 1.05 16 16 C -0.14 -1.28 9.56 -26.76 -0.26 -1.54 16 17 C -0.09 -0.87 5.55 -91.80 -0.51 -1.38 16 18 H 0.13 1.40 7.67 -51.93 -0.40 1.01 16 19 C -0.06 -0.55 5.61 -104.61 -0.59 -1.14 16 20 C -0.09 -0.71 9.30 -39.59 -0.37 -1.08 16 21 C -0.15 -1.21 10.03 -39.51 -0.40 -1.61 16 22 C 0.09 0.85 7.30 -39.41 -0.29 0.56 16 23 F -0.14 -1.41 17.27 2.25 0.04 -1.37 16 24 C -0.15 -1.27 10.03 -39.51 -0.40 -1.67 16 25 C -0.08 -0.67 9.73 -39.59 -0.39 -1.06 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 30 H 0.06 1.31 8.13 -51.93 -0.42 0.88 16 31 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.11 0.74 6.17 -51.93 -0.32 0.42 16 33 H 0.14 0.82 6.01 -52.49 -0.32 0.51 16 34 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 36 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 322.67 15.07 4.86 4.86 Total: -1.00 -31.54 322.67 -8.28 -39.81 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -4.38 Total: -2.52 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -3.81 Total: -13.83 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.74 Total: -25.60 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.70 Total: -17.66 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.54 -8.28 -39.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798284717.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.270 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds