Wall clock time and date at job start Mon Mar 30 2020 23:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99962 * 2 1 4 4 H 1.48510 * 109.47031 * 239.99817 * 3 2 1 5 5 H 1.48500 * 109.47510 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47409 * 119.99951 * 3 2 1 7 7 C 1.37872 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99656 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00365 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47045 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.46980 * 180.02562 * 10 9 7 12 12 C 1.34234 * 116.99947 * 179.97438 * 11 10 9 13 13 O 1.20822 * 120.00090 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99997 * 179.72219 * 12 11 10 15 15 H 1.09000 * 115.54686 * 34.33086 * 14 12 11 16 16 C 1.52993 * 117.49961 * 248.62577 * 14 12 11 17 17 C 1.52991 * 117.50010 * 180.02562 * 14 12 11 18 18 H 1.09005 * 117.49711 * 359.97438 * 17 14 12 19 19 C 1.50704 * 117.50122 * 215.00385 * 17 14 12 20 20 C 1.38244 * 119.97199 * 299.72623 * 19 17 14 21 21 C 1.38199 * 120.02317 * 179.76556 * 20 19 17 22 22 C 1.38465 * 119.97553 * 0.50922 * 21 20 19 23 23 F 1.35095 * 120.02753 * 179.77071 * 22 21 20 24 24 C 1.38466 * 119.94731 * 359.74054 * 22 21 20 25 25 C 1.38196 * 119.97252 * 0.02562 * 24 22 21 26 26 H 0.97002 * 119.99939 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47336 * 59.99637 * 9 7 2 28 28 H 1.08999 * 109.46911 * 299.99255 * 9 7 2 29 29 H 1.08997 * 109.47282 * 60.00186 * 10 9 7 30 30 H 1.09002 * 109.47256 * 299.99413 * 10 9 7 31 31 H 1.08996 * 117.50008 * 359.97438 * 16 14 12 32 32 H 1.09000 * 117.50123 * 145.01993 * 16 14 12 33 33 H 1.07995 * 119.98940 * 0.02562 * 20 19 17 34 34 H 1.07999 * 120.01703 * 180.25084 * 21 20 19 35 35 H 1.07993 * 120.01157 * 180.02562 * 24 22 21 36 36 H 1.07998 * 119.98902 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5192 -4.9195 -0.0001 12 6 2.2503 -6.0453 -0.0007 13 8 3.4568 -5.9821 -0.0002 14 6 1.5661 -7.3880 0.0050 15 1 0.6268 -7.4394 -0.5457 16 6 1.6913 -8.2393 1.2700 17 6 2.4545 -8.6336 0.0046 18 1 3.5340 -8.4818 -0.0002 19 6 1.9644 -9.8377 -0.7576 20 6 0.7680 -10.4360 -0.4086 21 6 0.3151 -11.5373 -1.1099 22 6 1.0653 -12.0480 -2.1557 23 9 0.6259 -13.1274 -2.8390 24 6 2.2660 -11.4510 -2.5010 25 6 2.7145 -10.3469 -1.8014 26 1 -0.4850 0.8401 -0.0004 27 1 0.6245 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8904 29 1 2.8718 -3.6043 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 2.2688 -7.8284 2.0980 32 1 0.8342 -8.8509 1.5520 33 1 0.1849 -10.0400 0.4097 34 1 -0.6216 -12.0021 -0.8398 35 1 2.8518 -11.8482 -3.3167 36 1 3.6512 -9.8813 -2.0702 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798284717.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:59 Heat of formation + Delta-G solvation = -110.569935 kcal Electronic energy + Delta-G solvation = -19786.303854 eV Core-core repulsion = 16342.711873 eV Total energy + Delta-G solvation = -3443.591981 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.89477 -41.73207 -40.37494 -38.21702 -37.02453 -35.45927 -32.39556 -32.12275 -31.21766 -27.57305 -25.74210 -24.84177 -23.77612 -22.94294 -21.87236 -21.12064 -19.20699 -18.72152 -18.29698 -17.67799 -17.48421 -17.04754 -16.73936 -16.58604 -16.47305 -15.58868 -15.07353 -14.93997 -14.49350 -14.38741 -14.24007 -13.90577 -13.59346 -13.36774 -13.14921 -12.97269 -12.62386 -12.58982 -12.55551 -12.02997 -11.94544 -11.66746 -11.59194 -11.53273 -11.47923 -11.31904 -10.61862 -10.06919 -9.47724 -8.27914 -6.41519 0.04392 0.27604 1.05260 1.40480 1.44344 1.51944 1.68271 2.38589 2.44217 2.92265 3.06423 3.28202 3.46796 3.56158 3.69996 3.79828 3.93945 4.01312 4.16019 4.20632 4.24385 4.30757 4.47799 4.65556 4.68509 4.89752 4.94715 5.00362 5.08133 5.17574 5.25079 5.27993 5.44790 5.52568 5.55299 5.73043 5.90447 6.05074 6.69538 6.74066 7.28395 8.84570 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040777 B = 0.002503 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.503078 B =11186.029395 C =11283.124648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.065 0.935 9 C 0.031 3.969 10 C 0.090 3.910 11 O -0.363 6.363 12 C 0.482 3.518 13 O -0.543 6.543 14 C -0.167 4.167 15 H 0.151 0.849 16 C -0.120 4.120 17 C -0.076 4.076 18 H 0.121 0.879 19 C -0.070 4.070 20 C -0.086 4.086 21 C -0.151 4.151 22 C 0.075 3.925 23 F -0.150 7.150 24 C -0.155 4.155 25 C -0.087 4.087 26 H 0.268 0.732 27 H 0.005 0.995 28 H 0.007 0.993 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.147 0.853 33 H 0.160 0.840 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.752 -24.725 -0.456 24.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.590 4.590 8 H 0.083 0.917 9 C -0.006 4.006 10 C 0.017 3.983 11 O -0.279 6.279 12 C 0.327 3.673 13 O -0.434 6.434 14 C -0.186 4.186 15 H 0.169 0.831 16 C -0.156 4.156 17 C -0.094 4.094 18 H 0.139 0.861 19 C -0.070 4.070 20 C -0.104 4.104 21 C -0.170 4.170 22 C 0.056 3.944 23 F -0.129 7.129 24 C -0.174 4.174 25 C -0.104 4.104 26 H 0.077 0.923 27 H 0.024 0.976 28 H 0.026 0.974 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.125 0.875 32 H 0.165 0.835 33 H 0.178 0.822 34 H 0.172 0.828 35 H 0.166 0.834 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.931 -24.590 -0.483 24.670 hybrid contribution 0.331 0.967 -0.399 1.097 sum 2.262 -23.622 -0.883 23.747 Atomic orbital electron populations 1.70087 1.07836 1.28395 1.50276 1.25970 0.95851 1.03441 0.94023 0.85373 0.78197 0.77386 0.79340 1.19079 1.20440 1.18969 1.21348 0.93708 0.91247 1.52684 0.91677 1.18976 0.94340 0.90619 0.96693 1.23175 0.95057 0.79082 1.00971 1.86507 1.42627 1.15802 1.82954 1.23340 0.85820 0.86901 0.71228 1.90603 1.16850 1.88486 1.47430 1.21969 1.03185 0.84546 1.08869 0.83086 1.23437 1.03564 0.98694 0.89926 1.21088 0.98626 0.89910 0.99788 0.86150 1.19184 0.95707 0.95583 0.96553 1.21214 0.95147 0.94338 0.99678 1.21378 1.01553 0.98332 0.95712 1.18042 0.95447 0.86562 0.94303 1.91478 1.89530 1.53000 1.78842 1.21318 0.95917 0.97673 1.02492 1.21069 1.00453 0.94877 0.94048 0.92282 0.97611 0.97430 0.92077 0.92319 0.87476 0.83485 0.82247 0.82776 0.83353 0.83887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 2 C 0.01 0.35 5.46 84.65 0.46 0.82 16 3 Si 0.97 43.48 29.54 68.60 2.03 45.50 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.55 -31.38 9.11 25.60 0.23 -31.15 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 9 C 0.03 1.67 5.35 29.85 0.16 1.83 16 10 C 0.09 4.09 5.40 71.98 0.39 4.48 16 11 O -0.36 -14.62 10.22 -51.46 -0.53 -15.15 16 12 C 0.48 16.32 7.74 71.24 0.55 16.88 16 13 O -0.54 -20.85 16.01 21.98 0.35 -20.50 16 14 C -0.17 -3.74 5.94 -11.54 -0.07 -3.81 16 15 H 0.15 2.94 8.14 -2.39 -0.02 2.92 16 16 C -0.12 -1.86 9.56 30.57 0.29 -1.57 16 17 C -0.08 -1.38 5.55 -11.56 -0.06 -1.44 16 18 H 0.12 2.47 7.67 -2.38 -0.02 2.45 16 19 C -0.07 -1.11 5.61 -19.86 -0.11 -1.23 16 20 C -0.09 -1.12 9.30 22.26 0.21 -0.91 16 21 C -0.15 -2.10 10.03 22.31 0.22 -1.87 16 22 C 0.08 1.28 7.30 22.38 0.16 1.44 16 23 F -0.15 -2.84 17.27 44.97 0.78 -2.07 16 24 C -0.16 -2.42 10.03 22.31 0.22 -2.20 16 25 C -0.09 -1.37 9.73 22.26 0.22 -1.15 16 26 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 27 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 2.71 8.13 -2.39 -0.02 2.69 16 30 H 0.06 2.63 8.13 -2.39 -0.02 2.61 16 31 H 0.11 1.77 8.14 -2.39 -0.02 1.76 16 32 H 0.15 1.28 6.17 -2.39 -0.01 1.27 16 33 H 0.16 1.25 6.01 -2.91 -0.02 1.23 16 34 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 35 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 36 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -68.40 322.67 6.88 -61.51 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.09 Total: 5.84 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 2.88 Total: -19.89 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.28 Total: -55.25 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -0.17 Total: -35.65 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -68.40 6.88 -61.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798284717.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.056 kcal (2) G-P(sol) polarization free energy of solvation -68.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds